LOCUS       XM_008773460            1876 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus t-complex 11 family, X-linked 2
            (Tcp11x2), transcript variant X1, mRNA.
ACCESSION   XM_008773460
VERSION     XM_008773460.3
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086039) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_008773460.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1876
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..1876
                     /gene="Tcp11x2"
                     /note="t-complex 11 family, X-linked 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 EST, 7 long SRA reads, 20 Proteins"
                     /db_xref="GeneID:679989"
                     /db_xref="RGD:1598081"
     CDS             35..1678
                     /gene="Tcp11x2"
                     /codon_start=1
                     /product="T-complex protein 11-like X-linked protein 1
                     isoform X1"
                     /protein_id="XP_008771682.3"
                     /db_xref="GeneID:679989"
                     /db_xref="RGD:1598081"
                     /translation="MVYSMDSSTGEPQGFSVVRAATTGKGSQTPRTRRDTTNMPKTKK
                     NISQKDSSPTEIRVPKPETSTKNQEDKTSSEVPFPENQPAAISKEDLGKVNEVSKLSI
                     AHEIVVNQDFIVEKNDLPENSLESKFVETMYNAFWDHLKDQLSRTPPDFSCALELIKN
                     IKQILMSLLLPRQNRLRNEIEEALDLDLLKQETEHGALDVPHLSNYILNLMALMCAPV
                     RDEAVQELESIKDPVQLLRGIFQVLGLMKMDMVNYTIKNIRPYLQEHSIQYERAKFQE
                     LLDKQPDLLDCTTKWMTRAATELITSLPSISVSPSTSSGTISAFPSPKPDPDPPSLTT
                     VLYQGYLNLVLRDHGSEEFPETLLMDKARLQNMKSKLRHLTILASVLLVARSFSCGVL
                     FSSPEFVDKLKCITKALTEEFSSKPEESMLSVSEQVSQEIHQGLKETGLTALSSENRA
                     SLVGQLRNIAKKENCIRTIIEQRIHLFLKCCLIRGMQESLLDFPGGLLFIEPELAELG
                     WKFVNLMHHNQHVFSPYYAEILKNIISPPSTEENEEKPF"
     polyA_site      1876
                     /gene="Tcp11x2"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 ccttccctga tgaaatcccc tctccctggt tgctatggta tattccatgg actcctcaac
       61 cggggagcca cagggatttt cagttgtaag agcagccacc acggggaaag gcagtcaaac
      121 acccaggacc agaagagata ccaccaatat gcccaaaact aagaaaaata tatcccaaaa
      181 ggactccagt ccgactgaaa ttagagtccc aaaaccagaa acatcaacca agaaccagga
      241 agataagacc agttcagagg ttccatttcc agagaaccag cctgcagcaa tttctaaaga
      301 agatttagga aaagttaatg aagtttcaaa attgagtatt gctcatgaaa ttgttgtaaa
      361 ccaagatttc attgtagaaa agaatgattt acctgaaaac agtctggaaa gcaagtttgt
      421 ggagacaatg tacaatgcat tttgggacca cttgaaagat caactgtctc gtactcctcc
      481 tgatttttct tgtgctcttg aacttataaa aaacataaaa cagattttaa tgtcactact
      541 attaccacgt cagaatcgtc taagaaatga gattgaagag gcactggatt tggatctcct
      601 caaacaagaa acagagcatg gggctctaga tgttcctcat ctctccaact atatcctcaa
      661 tttgatggcc ctcatgtgtg caccagttag agatgaagct gtacaggaac tcgagagcat
      721 aaaagatcca gtacagttac tgaggggtat cttccaagtt ctaggcctga tgaaaatgga
      781 catggtgaac tatactatca agaacattcg accatattta caggaacatt ctatacaata
      841 tgaacgagct aaattccaag aactccttga caagcagcct gatctccttg attgcaccac
      901 aaaatggatg actagagccg ccacagagct tattacatca ctaccaagta tatctgtctc
      961 tccgagcacc tcttctggca caataagtgc atttccatct ccaaagcctg acccggatcc
     1021 gcctagtctt acaacagtgt tataccaagg gtacctaaat cttgttctca gggaccatgg
     1081 gagcgaagaa ttccctgaga ctctgctgat ggataaagca cgactgcaga atatgaaatc
     1141 caaattgcgc cacttgacca ttctagcctc agttttactt gtggcaagaa gtttctcttg
     1201 tggtgtttta ttcagctcgc cagaatttgt ggataaattg aaatgcataa caaaggctct
     1261 aacagaagaa tttagctcca agccagaaga atctatgtta agtgtgagtg aacaagtatc
     1321 tcaggaaatc catcaaggtc ttaaagaaac gggtctaact gctctgagca gtgaaaatag
     1381 ggcatcactt gtaggacaac tccgaaacat tgccaaaaaa gagaattgca ttcgtaccat
     1441 catcgaacaa cggatacatt tatttctgaa gtgctgtttg attcgaggca tgcaagaatc
     1501 tcttctggac ttccccggag gccttctttt cattgagcca gagctggcag aactgggttg
     1561 gaagtttgtt aatctgatgc atcacaacca gcatgtgttt agcccttact atgctgaaat
     1621 cctaaaaaat atcatctctc cgcccagtac agaagaaaac gaggaaaaac ctttctgaca
     1681 atgctggtcc caagtcctgg caccaggaat ccaaagagag gtctccttat attcctgaaa
     1741 taacatcacc tgtggccaac aactgaggtg accctcttca tcgtcgttaa cagccaggat
     1801 gcaactgtaa tggccaacca tacaaactcc aaatggccca atgccctccg ttaataaatt
     1861 cttgggctgc aagaaa
//
