LOCUS       NM_001017458            2293 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Rattus norvegicus t-complex 11 like 2 (Tcp11l2), mRNA.
ACCESSION   NM_001017458 XM_234997
VERSION     NM_001017458.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2293)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2293)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC092644.1.
            
            On Apr 29, 2005 this sequence version replaced XM_234997.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC092644.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132261,
                                           SAMD00132262 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2293
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q13"
     gene            1..2293
                     /gene="Tcp11l2"
                     /gene_synonym="RGD1307494"
                     /note="t-complex 11 like 2"
                     /db_xref="GeneID:314683"
                     /db_xref="RGD:1307494"
     exon            1..221
                     /gene="Tcp11l2"
                     /gene_synonym="RGD1307494"
                     /inference="alignment:Splign:2.1.0"
     CDS             65..1618
                     /gene="Tcp11l2"
                     /gene_synonym="RGD1307494"
                     /note="t-complex 11, testis-specific-like 2"
                     /codon_start=1
                     /product="T-complex protein 11-like protein 2"
                     /protein_id="NP_001017458.1"
                     /db_xref="GeneID:314683"
                     /db_xref="RGD:1307494"
                     /translation="MPFNGEKQYVNEDQQSDSESSRFSESTASLSDYGCSRQSFTSDS
                     SSKSSSPASTSPPRGIMFDDVMAAAKNLSDMTLAHEIAVNENFQLRPNALPENSLAGQ
                     VKRVVHQAFWDVLEADLSAEPPQYEYAIKLFEEIREILLSFLTPGGNRLHSQICEVLD
                     IDLIRQQAEHSAVDIQGLANYVISTMGKICAPVRDEDIRELKATTNIVEMLRQIFRVL
                     DLMRMDMTNFVIRNIRPHIQHHLVEYERNKFQEVLEETPNALSQTTEWLKESIDKELF
                     SETDVAPGAEHSSTPSLSPLTVLNNCYLKLLQWDYQKNVLPETLMTDGPRLQELTEKL
                     NQLKMIACVSLITNNMVGAVTEGLPELANRLKRISAVLLEGMSKQTFNLKEALNSIGV
                     QTCAEVNKALKERGSPTLNAEVQANLVGQFTSLEEKDNPVCALMDKRIQLYMKSLLCL
                     PSTQKSRPPVPGGLDVIQQELEVLGCQYANIVNLNKQVYGPFYANIFRKLLFRDEAMG
                     KIDASLPTN"
     exon            222..357
                     /gene="Tcp11l2"
                     /gene_synonym="RGD1307494"
                     /inference="alignment:Splign:2.1.0"
     exon            358..478
                     /gene="Tcp11l2"
                     /gene_synonym="RGD1307494"
                     /inference="alignment:Splign:2.1.0"
     exon            479..699
                     /gene="Tcp11l2"
                     /gene_synonym="RGD1307494"
                     /inference="alignment:Splign:2.1.0"
     exon            700..836
                     /gene="Tcp11l2"
                     /gene_synonym="RGD1307494"
                     /inference="alignment:Splign:2.1.0"
     exon            837..1018
                     /gene="Tcp11l2"
                     /gene_synonym="RGD1307494"
                     /inference="alignment:Splign:2.1.0"
     exon            1019..1200
                     /gene="Tcp11l2"
                     /gene_synonym="RGD1307494"
                     /inference="alignment:Splign:2.1.0"
     exon            1201..1373
                     /gene="Tcp11l2"
                     /gene_synonym="RGD1307494"
                     /inference="alignment:Splign:2.1.0"
     exon            1374..2264
                     /gene="Tcp11l2"
                     /gene_synonym="RGD1307494"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 catccatcca tccatccatc catccatcca tccatccatc catccatccc caaggtgata
       61 aaggatgcct ttcaacggtg agaagcaata tgtgaacgag gaccaacaga gtgattcaga
      121 gtcttctcgc ttctctgaaa gtacggcttc cctcagtgac tacgggtgtt ccagacaaag
      181 cttcaccagc gattcctcca gcaaatccag ctctcctgcc tcaacaagcc ctccccgggg
      241 cataatgttc gatgacgtga tggctgcagc aaagaactta tcagacatga ctctggctca
      301 cgaaatagct gtaaacgaga acttccagct gaggccaaac gctctcccag agaacagcct
      361 ggctggtcaa gtgaagcgtg ttgttcacca ggccttctgg gacgtcttgg aagcggatct
      421 cagtgctgag cctccccagt atgaatacgc catcaaactg tttgaagaaa tcagagagat
      481 tcttctctcc tttctcactc ctggcgggaa caggcttcac agccagatct gtgaagtttt
      541 ggacatcgat ctcattaggc agcaggccga gcacagtgct gttgatatcc aaggtctggc
      601 caactatgtc atcagcacga tgggaaagat atgtgctcct gtgagagacg aagacatcag
      661 agagctgaaa gctactacca acatcgtgga gatgctgaga caaatcttcc gtgtcttgga
      721 cctcatgaga atggacatga caaatttcgt cattaggaat attagaccgc acatccagca
      781 ccatttggtg gaatacgaga gaaacaaatt ccaggaagtt ctagaagaaa ctccaaatgc
      841 cctcagtcaa accacggaat ggctaaaaga gtccatagat aaagaattat tttctgagac
      901 tgatgtagct cctggagctg aacacagctc cacaccaagc ctaagccctc tgacggtgct
      961 aaacaattgt tacttgaaac tccttcagtg ggattatcag aaaaacgtct taccagagac
     1021 actcatgaca gatggaccac ggcttcagga actgacagaa aagctcaatc aattgaagat
     1081 gatcgcctgc gtgtccctaa ttaccaacaa catggtgggt gctgttacag aaggcctgcc
     1141 tgagcttgca aacaggttaa aaaggatctc agctgttctg ctcgaaggca tgagtaaaca
     1201 gacctttaac ttgaaggagg ccctgaactc tattggtgtt cagacctgtg ctgaagttaa
     1261 taaggccctg aaagagagag gctcgcccac cctaaatgct gaggttcaag ctaatcttgt
     1321 cggtcagttc acaagccttg aagagaagga caatccagtc tgtgccttga tggataaacg
     1381 gatccagttg tacatgaaga gcctgctctg tcttccaagc actcagaaga gcaggcctcc
     1441 tgtgccaggt ggccttgatg tcattcagca ggagctggaa gtgcttggct gccagtatgc
     1501 aaacatcgtg aatctcaaca agcaggtgta tggacctttt tatgcaaata tattccgaaa
     1561 gctgctcttc cgggatgaag ccatggggaa gatagatgct tcacttccta ccaactaaag
     1621 agaagctggc cctggagacc agatggaggc cagcacttgg tgcacggtcc atttacacca
     1681 atggcattat agatgtggta cattctcagc actgttccta gagcagtgtt agacgaatct
     1741 gtgtaagctg gtaatgttag caccacagaa gggccacata cccctttcgt gtctaaagca
     1801 gatagtttta tgaagaaaag tattttgtaa tgaattatat tgcctatata atactggtgt
     1861 tttcttaaac atttatattg aggtgtttgg ggagtttgta ttgttttgac agcatgtctg
     1921 tgtaacagcc ctggctgtcc tggaatatat tgcacatttc gatgtgactt gttcattcaa
     1981 cctgaaaggt gactttgttt aaatacttga tgatactgcc attgcctgca gacacacaat
     2041 gtgcaaacat ttaaaaatac attgaagatg aagggcattc tgcttctttt ttgttaagtg
     2101 gcaaagtaaa tttgtgtctt gggtctggat gtagccgagt gcatcattag gatttttaag
     2161 tcatagctct tggcatgttt atttagtttt tacttagaca tttacttcta cttttgtgtc
     2221 tttcctaaca tggttgtttt gtaataaaaa ttttattaaa cagaaaaaaa aaaaaaaaaa
     2281 aaaaaaaaaa aaa
//
