LOCUS       NM_001412638            1894 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus t-complex protein 10b (Tcp10b), mRNA.
ACCESSION   NM_001412638 XM_006227930
VERSION     NM_001412638.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1894)
  AUTHORS   Zhong,Z., Qiu,J., Chen,X., Wan,B., Ni,J., Yang,Y., Bai,M., Zhang,H.
            and Yu,L.
  TITLE     Identification of TCP10L as primate-specific gene derived via
            segmental duplication and homodimerization of TCP10L through the
            leucine zipper motif
  JOURNAL   Mol Biol Rep 35 (2), 171-178 (2008)
   PUBMED   17377852
REFERENCE   2  (bases 1 to 1894)
  AUTHORS   Jiang,D.J., Yu,H.X., Hexige,S.Y., Guo,Z.K., Wang,X., Ma,L.J.,
            Chen,Z., Zhao,S.Y. and Yu,L.
  TITLE     Human liver specific transcriptional factor TCP10L binds to MAD4
  JOURNAL   J Biochem Mol Biol 37 (4), 402-407 (2004)
   PUBMED   15469726
REFERENCE   3  (bases 1 to 1894)
  AUTHORS   Chen,Z., Yu,L., Wu,H., Yu,J., Zhang,L., Jiang,D., Ma,L., Li,D. and
            Zhao,S.
  TITLE     Identification of a novel liver-specific expressed gene, TCP10L,
            encoding a human leucine zipper protein with transcription
            inhibition activity
  JOURNAL   J Hum Genet 48 (11), 556-563 (2003)
   PUBMED   14586771
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Oct 13, 2022 this sequence version replaced XM_006227930.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC166440.1, SRR26643293.842.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-64                JAXUCZ010000001.1  55485411-55485474
            65-191              JAXUCZ010000001.1  55486135-55486261
            192-346             JAXUCZ010000001.1  55486576-55486730
            347-562             JAXUCZ010000001.1  55490617-55490832
            563-724             JAXUCZ010000001.1  55494191-55494352
            725-824             JAXUCZ010000001.1  55495705-55495804
            825-928             JAXUCZ010000001.1  55497468-55497571
            929-1027            JAXUCZ010000001.1  55498339-55498437
            1028-1112           JAXUCZ010000001.1  55502910-55502994
            1113-1230           JAXUCZ010000001.1  55506732-55506849
            1231-1894           JAXUCZ010000001.1  55508173-55508836
FEATURES             Location/Qualifiers
     source          1..1894
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q12"
     gene            1..1894
                     /gene="Tcp10b"
                     /note="t-complex protein 10b"
                     /db_xref="GeneID:308169"
                     /db_xref="RGD:1307454"
     exon            1..64
                     /gene="Tcp10b"
                     /inference="alignment:Splign:2.1.0"
     exon            65..191
                     /gene="Tcp10b"
                     /inference="alignment:Splign:2.1.0"
     exon            192..346
                     /gene="Tcp10b"
                     /inference="alignment:Splign:2.1.0"
     CDS             239..1420
                     /gene="Tcp10b"
                     /note="putative t-complex protein 10A homolog 2"
                     /codon_start=1
                     /product="T-complex protein 10A homolog 2"
                     /protein_id="NP_001399567.1"
                     /db_xref="GeneID:308169"
                     /db_xref="RGD:1307454"
                     /translation="MLEDQSQGGGGPNNEKKKMEAKAQAPGEDSKTDEVVGLQKQISD
                     LGTELTRQSSWWCVAHKDLQSQIDALIKENQEIRAELQTLKKQDSEAPKAPTASPSPP
                     TATNTLPVYIRIEGMDSEKTTSWDERDDAPSGSPQNGSTMATGGTDSLEERLSFTSLD
                     EKVIHMSSKFLQRGFGRLSPEPLSDSTFLDTESPADIWSSNPDTSEGEILLQARASRV
                     LPCFPPNAVWLQNIPAKSRVPKEVQQTSDTTKEDETQEKRHSNGKIYYYADAQTTHTT
                     YPDGVEVVQFPNKWTEKFYPDGSKETVFPDGTVKQLKDGCEETVFPDGTFVTVKRNGD
                     KTIMFSNGQKEIHTARFKRREFPDGTTKTVYCNGCQETKYASGRIRVKDETGTVILDW
                     K"
     exon            347..562
                     /gene="Tcp10b"
                     /inference="alignment:Splign:2.1.0"
     exon            563..724
                     /gene="Tcp10b"
                     /inference="alignment:Splign:2.1.0"
     exon            725..824
                     /gene="Tcp10b"
                     /inference="alignment:Splign:2.1.0"
     exon            825..928
                     /gene="Tcp10b"
                     /inference="alignment:Splign:2.1.0"
     exon            929..1027
                     /gene="Tcp10b"
                     /inference="alignment:Splign:2.1.0"
     exon            1028..1112
                     /gene="Tcp10b"
                     /inference="alignment:Splign:2.1.0"
     exon            1113..1230
                     /gene="Tcp10b"
                     /inference="alignment:Splign:2.1.0"
     exon            1231..1894
                     /gene="Tcp10b"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agagagctgt tgggatatgg cctagatgag gaatatcctg gtagaagtca ccatcttagg
       61 ctaggctatg gagttgtaag ttggggacca ggggtttgtc ctgatgagag gcagtcaaag
      121 cttccacagc aagggtctga cgaaggacta agacctccca ggtgccctct caaggccctg
      181 ctcgcctcaa gaatgcttac tggtcacctc gaggctaagg agtcagctga aacaaatcat
      241 gttagaggac cagagtcagg gaggaggagg gcccaacaat gagaagaaga agatggaggc
      301 caaagcccag gcccctgggg aggacagcaa gactgatgag gttgtggggc tgcagaagca
      361 gatctctgac cttgggacag aactcacaag acagtcatca tggtggtgcg tagctcacaa
      421 agacctccag agtcagatcg atgctctgat aaaggagaac caggagatcc gtgcagagtt
      481 gcagaccttg aagaagcagg actcggaggc cccaaaagcc cctacagcct caccatcccc
      541 gccaacagcg accaacactc tgccagtgta catacggata gaggggatgg attctgagaa
      601 aacaacatca tgggatgaaa gagatgacgc gccttctgga agtcctcaaa acgggagtac
      661 aatggccacc ggaggaacag actctctgga ggaaagactg tcttttacat ctttagatga
      721 aaaggttata cacatgtctt ccaaatttct gcaaagaggc tttggcagac tgtcaccaga
      781 accactttct gacagcacat tcctggacac agagtcaccg gctgatatct ggtcttccaa
      841 tccagacact tcagaaggtg agattctcct gcaggcccga gcaagcaggg tcctcccttg
      901 ttttcccccg aatgcagtgt ggctgcagaa tattccagca aagtcaagag ttcctaaaga
      961 agtacagcaa acctcggaca ctacaaagga agatgagaca caggaaaagc gacactcaaa
     1021 cggcaagatt tattattatg cggacgctca gacgacgcac acaacctacc cagatggtgt
     1081 cgaagttgtg cagtttccta acaagtggac tgaaaaattc tacccggatg gctccaagga
     1141 aaccgtgttt cctgatggga cagtgaaaca gctcaaggat ggatgtgagg agactgtgtt
     1201 ccccgatggg acatttgtga cagtgaaaag gaatggagac aaaaccatca tgttcagcaa
     1261 cggacagaaa gaaatccaca cagccaggtt caagcggagg gaattcccag atggcaccac
     1321 caagacggtg tactgcaatg gctgccagga aaccaagtat gcctcaggga ggatcagagt
     1381 caaagacgag acgggaactg tcatcctgga ctggaagtag tacatctaaa ggactcaatg
     1441 ccaggcagta gcttcaactt ccaaatatag ttttgactaa aatagacaaa gcaactcaca
     1501 ttgataggtt ccctctgaca atcttggaga tctccttatg catgaggagt aaagagacat
     1561 ccaaaaattt ggaaagaaag agaccatgta gccaccatct tgggagaaag gtcagagaaa
     1621 cagtagccag aaattaggcc cgggacatgg ccttgtccag accatgcctt ctgtcagagc
     1681 ctggccctgg agtagggggt ataagggaag cagcaacatc actgccagct aattcctggg
     1741 agcagccatt aacaacaact gtctccaagt cttgcttggc caacgcctac ctacctgcat
     1801 ctacttctac cccctttaag agtccttata agtaggatcc tgggggatgt atcttcactg
     1861 gtgcctgatg tatcaataaa catgattaac catc
//
