LOCUS       XM_056985271            2373 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus trichohyalin-like 1 (Tchhl1), mRNA.
ACCESSION   XM_056985271
VERSION     XM_056985271.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_056985271.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-157               JACYVU010000069.1  45607361-45607517
            158-318             JACYVU010000069.1  45608196-45608356
            319-1935            JACYVU010000069.1  45608835-45610451
            1936-1937           "NN"               1-2
            1938-2373           JACYVU010000069.1  45610452-45610887
FEATURES             Location/Qualifiers
     source          1..2373
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2373
                     /gene="Tchhl1"
                     /note="trichohyalin-like 1; The sequence of the model
                     RefSeq transcript was modified relative to its source
                     genomic sequence to represent the inferred CDS: inserted 2
                     bases in 1 codon; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 3 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 21 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:295193"
                     /db_xref="RGD:1308305"
     CDS             178..2061
                     /gene="Tchhl1"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: trichohyalin-like protein
                     1"
                     /protein_id="XP_056841251.1"
                     /db_xref="GeneID:295193"
                     /db_xref="RGD:1308305"
                     /translation="MSRLLRGIFCVIEIFHKYASEDGNKEAMLTHRELRQLLEGEIGD
                     FLQPHVFHAVERKLNLLHFDRDGTISFEEFLLAIFSLLNPPYFDISLLNSEPRLMSKS
                     EKTDAVDLGAITGSTQRVVGVGPTQERLIFPPEMSLSDQSRKEEGEAGDELMVSPWED
                     VKTHGLPRNVSEPNDPEKHQPKEDAQEIAQTVPAAEYDVVQYQRNTAVEVSKQSAGPT
                     QEIPRQGNKTSRRQSDTKISDYVIQRPTDYEEHASATQDPILQKEDKVAGSAHTDLPV
                     VAATGKSSQTQEVLEPTDDTRLSETQGTGKDAGRMPPETTHLEEPKADASASGSHSLP
                     VQEREHVQSRSRNVSETSSRGDLEEECKEHERKTRSLAPEAETPDEKCQEFPGSQREN
                     DVERGTAALDPSSGEGNQNLPEVKEESISEKKARHSEKDTVDTFAINKTSPAIEETPE
                     TRERSQELAPLEEQSQGKQHRAAKTHDESVRKEDHSEGEDPELSPTQSDEGFCETPNS
                     LAPEVGKSSSEIAETRVPGESQRQVEHHGDAKQESHINNPDSQKQGVPGESNREQEEV
                     VLSIQEDGQLPEEQEEEREEXDSLSSRTKRGPGELWSPVKKGTPQQGVKTKSLEAEGS
                     EAQ"
ORIGIN      
        1 tgggttggat ggtgatgaat catatcatta cactcagagg gtgtctcctt ctaactaagc
       61 gattagagac tcaataaaaa ggtccaggtg cctgcgtggc tcacagcccg ctgccccaca
      121 ctgccccaca ttccacttgc tctcgctcct gaaccagcct cttctgactt gataaagatg
      181 tcgaggctcc tgagaggtat cttctgtgtc attgagatat tccacaagta tgccagtgag
      241 gatggcaaca aggaagcaat gctgacccac agagagctga gacagctcct tgagggagaa
      301 attggggact tccttcagcc acatgtcttt catgctgtgg aaagaaagtt gaaccttctg
      361 cattttgaca gagatggcac catcagtttt gaagaatttc tccttgcaat cttcagccta
      421 ttgaacccgc cttattttga catatcttta ctaaattcag aaccaagact gatgtctaaa
      481 tcagagaaga cggatgctgt ggatttggga gcaatcactg gaagcactca gcgggtagta
      541 ggggttgggc caactcagga aaggctcata tttccaccag aaatgtcatt atcagatcag
      601 tcccgcaagg aagaaggtga ggcaggtgat gagcttatgg tgagcccatg ggaagatgtt
      661 aagacccacg gcctgccaag aaatgtgtct gagccaaatg accctgagaa acaccagcca
      721 aaagaagatg ctcaggaaat cgcacaaact gttccagcag cagaatatga tgtagtccag
      781 tatcagagaa atacagcagt agaagtatcc aaacagagtg ctggcccaac acaggagatc
      841 ccaagacaag ggaataaaac atccaggagg caaagtgaca ccaagataag tgactatgtg
      901 attcagaggc caactgacta tgaggagcac gcttctgcaa cacaagatcc aatcctgcaa
      961 aaagaagaca aagtcgccgg gtcagcgcac actgacttgc cagtagtagc tgctaccggg
     1021 aaatcatctc agacacagga agttcttgag cctaccgatg atacgagact atctgagact
     1081 caaggaactg gaaaggatgc tggcagaatg ccacctgaaa ccacacattt agaggagccc
     1141 aaagccgatg ctagtgcatc tgggagccac agtttgccag ttcaagaaag agaacatgtc
     1201 caaagccgta gcagaaatgt ttcagaaaca tctagtagag gtgatttgga ggaggaatgt
     1261 aaagagcacg aaagaaaaac cagatctcta gcaccagaag ccgaaacacc ggacgagaag
     1321 tgtcaagaat tcccaggatc acagagggaa aatgatgtgg aaaggggcac tgctgcgcta
     1381 gatccaagct ctggagaagg aaatcagaat ctccctgaag tcaaggaaga atctatctcc
     1441 gaaaaaaagg caagacacag tgagaaagac acagtagata catttgcaat caacaaaacc
     1501 agcccggcaa ttgaagagac accggaaaca agagaaaggt cccaagagct ggcaccgctt
     1561 gaggagcaat ctcaagggaa acagcataga gctgccaaga ctcatgacga gtcagtcagg
     1621 aaggaggacc acagtgaggg agaagaccct gagttatcac ctacacagag tgatgagggc
     1681 ttttgtgaaa ctcccaacag cctggctcca gaggtaggta agagcagctc agagatagct
     1741 gagacacgtg taccagggga gtcacagaga caggtggagc accatggaga tgctaagcaa
     1801 gaaagtcaca ttaacaaccc agattcccag aagcagggag taccaggcga gagcaacaga
     1861 gaacaggagg aggtagtgct gtcaatccaa gaagatggac agctcccaga ggaacaggaa
     1921 gaagagagag aggagnntga cagtctgagc tcaaggacca aaagaggccc aggggagcta
     1981 tggagcccag tgaagaaggg gacgccacag cagggagtga aaacaaaatc actagaggca
     2041 gagggttcag aggcccagtg agtctactga acgttgatat atttgacttg atggggactt
     2101 cggattaaag ttgacaatta aataacctga agatcaattt cttttgttgg cttatttctt
     2161 cttccctttt ccatcttacc ttggagacac tgaacagaaa caaacacaat cagttacttc
     2221 tgggttttgc tttttgtttt cttctgaata ctataattag agaatgatgc acttgatctt
     2281 agcaatggcc cagggagcgt tatattttct gagaccccct tctcttggaa ttctgtctca
     2341 atattatttt ttcaatttaa tttgtgtctc tta
//
