LOCUS       XM_008762597            2125 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus transcription factor like 5 (Tcfl5),
            transcript variant X1, mRNA.
ACCESSION   XM_008762597
VERSION     XM_008762597.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 10, 2024 this sequence was replaced by
            NM_001427152.1.
            
            On Jan 21, 2021 this sequence version replaced XM_008762597.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2125
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2125
                     /gene="Tcfl5"
                     /note="transcription factor like 5; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 11
                     ESTs, 2 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 20 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:311715"
                     /db_xref="RGD:1305899"
     CDS             16..1488
                     /gene="Tcfl5"
                     /codon_start=1
                     /product="transcription factor-like 5 protein isoform X1"
                     /protein_id="XP_008760819.2"
                     /db_xref="GeneID:311715"
                     /db_xref="RGD:1305899"
                     /translation="MSGPGPREPPPEAGATGGEAGPEGAGGGDAALGEPGLSFTTTDL
                     SLVEMTEVEYTQLQHILYSHMEAADGELEARLGSALLAGPGAGSGAAGSLAPAPPVYP
                     VLCPPLAADAPCLGHVDFQELRMMLLGEAGAAEKTPGGADGTRTRADGAAKEGAGGAG
                     PDGAPEARAKPTVRVRLEDRFNSMPAEPPAPRGAEPAESGVALNNLVTLIRHPSELMN
                     VPLHQQQNKCTTLVKNKTAAATTALQFTYPLFTSACSTGGNASLAQTQSSSNSCSILE
                     AAKHQDIGLPRAFSFCYQQEIESTKQTGGSRNKALPEQVWIKVGEEALCKQAINKRNR
                     SRIRQLDTSVERRALGEIQNVGEGSTASQGTWQSSESSQSNLGEQTQSGPQGGRSQRR
                     ERHNRMERDRRRRIRICCDELNLLVPFCNAETDKATTLQWTTAFLKYIQERHGDSLKK
                     EFESVFCGKTGRRLKLTRPESLVTCPAQGSLQSSPAMEIK"
ORIGIN      
        1 ccgcgccgcg ccggcatgtc gggccccggg ccgcgggagc cgccgcctga ggcgggcgcg
       61 accggcggcg aggcgggccc cgagggcgcg ggcggcgggg acgcggcgct gggagagccg
      121 gggctgagct tcacgaccac cgacctgagc ctggtggaga tgacggaagt ggagtacacg
      181 cagctgcagc acatcctcta ctcgcacatg gaggcggcgg acggcgagct cgaggcgcgc
      241 ctgggctccg cgctgctggc cggcccgggc gcgggctcgg gcgcggcggg ctcgctggcg
      301 ccggcgccgc ctgtgtaccc agtgctgtgc ccgccgctgg cggccgacgc gccgtgcttg
      361 ggccacgtcg acttccagga gctgcgtatg atgctgctgg gcgaggcggg cgcggcggag
      421 aagacgcctg gcggtgcgga cgggacgcgg acgcgggcgg acggcgcggc caaagaaggc
      481 gcgggcggcg cggggcccga cggcgcacct gaggcccggg ccaagccgac cgtacgcgtc
      541 cgcctggagg accgcttcaa cagtatgccg gccgagccgc ctgcgccgcg cggtgctgag
      601 cccgccgagt cgggcgtggc gctcaacaat ttggtaactc ttattcgaca tccatctgaa
      661 ttaatgaatg ttcctcttca ccagcaacaa aacaaatgta cgaccttagt gaaaaataaa
      721 actgctgctg ccactactgc tttgcagttc acctacccac tgtttacaag tgcctgctcc
      781 actggtggga atgccagcct tgcacagacg cagagttcta gtaactcatg ttctatactg
      841 gaagctgcca agcaccagga tattggactg cctagagcat tttctttctg ttaccagcaa
      901 gagattgagt ccaccaaaca aacaggaggt agtcgaaaca aagccttgcc ggagcaggtt
      961 tggattaaag tgggagaaga agcgctatgt aaacaagcaa tcaataagag gaatcggagt
     1021 agaatccgcc agctggacac aagtgtggag cgaagagccc tcggagagat tcagaatgtg
     1081 ggcgaaggct ctacagcttc acagggcacc tggcagtctt cagagtcctc acagtcaaac
     1141 ctgggggagc agacgcagag cgggccccag ggaggaaggt ctcagcgtcg ggagaggcac
     1201 aaccgaatgg aacgagatag aaggcgcaga atccgcattt gctgtgatga gctgaatctt
     1261 ttagttccat tctgcaatgc ggagacagat aaagcaacaa cccttcagtg gaccacagca
     1321 ttcctgaagt acattcagga aagacatggg gattctctta aaaaggaatt tgagagcgtg
     1381 ttttgcggta aaactggcag aaggctaaag ctgaccagac ccgaatccct ggtgacctgc
     1441 cctgcacagg gcagtctgca gagcagccct gccatggaga tcaagtgact ggactgaccc
     1501 aggccctggg agagaaccgc cgttcctgcg gcatcatgca catgcctgcc accccggagt
     1561 tcagctctga gtcctcgaga gggatgtggc tccagttggt gggactctag taaggacttt
     1621 gagagcacat tttgtgaaag tatttatcta aacaaaatac ttacccacta atgtccggat
     1681 gaccatttga ggatgaagac atcttgataa ttagtaattt ttcaattacc tgtccgacac
     1741 catcatgtgt tcttaacatg ataacttaaa aaaaattaac atccttggta atttcttgag
     1801 tctcgagact aaagaaaaca ttgccgttta cttattttgt ttacatttta aatgtgcccc
     1861 tttagcaatt ggaagaaggt aaattgttct taactagaag aggtttggaa actttatttc
     1921 atttgttctg tccccccatt tccagtctca cggtactcta ttggaaaaat gcagtgccat
     1981 tttaaaactt tgctaagatt ttccagagac ttcttttaaa gctccttttg cccataaaca
     2041 ttttcgcaat acattgcttt aatgcccaca tttccatatt gtgaggcatt gcttaatgtg
     2101 taataaactg tgtgtttgga acaaa
//
