LOCUS       XM_039090397            1708 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus transcription factor 7 like 2
            (Tcf7l2), transcript variant X46, mRNA.
ACCESSION   XM_039090397
VERSION     XM_039090397.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039090397.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1708
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1708
                     /gene="Tcf7l2"
                     /note="transcription factor 7 like 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 5
                     ESTs, 1 long SRA read, 7 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 64 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:679869"
                     /db_xref="RGD:1583621"
     CDS             45..1412
                     /gene="Tcf7l2"
                     /codon_start=1
                     /product="transcription factor 7-like 2 isoform X43"
                     /protein_id="XP_038946325.1"
                     /db_xref="GeneID:679869"
                     /db_xref="RGD:1583621"
                     /translation="MPQLNGGGGDDLGANDELISFKDEGEQEEKNSENSSAERDLADV
                     KSSLVNESETNQNSSSDSEAERRPPPRSESFRDKSRESLEEAAKRQDGGLFKGPPYPG
                     YPFIMIPDLTSPYLPNGSLSPTARTYLQMKWPLLDVQAGSLQSRQALKDARSPSPAHI
                     VSNKVPVVQHPHHVHPLTPLITYSNEHFTPGNPPPHLPADVDPKTGIPRPPHPPDISP
                     YYPLSPGTVGQIPHPLGWQGQPVYPITTGGFRHPYPTALTVNASMSRFPPHMVPPHHT
                     LHTTGIPHPAIVTPTVKQESSQSDVGSLHSSKHQDSKKEEEKKKPHIKKPLNAFMLYM
                     KEMRAKVVAECTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSA
                     RDNYGKKKKRKRDKQPGETNEHSECFLNPCLSLPPITGEKKSAFATYKVKAAASAHPL
                     QMEAY"
ORIGIN      
        1 cttcattttt cttccaaaat tgctgctggt gggtgaaaaa aaaaatgccg cagttgaacg
       61 gcggtggagg agatgaccta ggcgctaacg acgaactgat ctccttcaaa gacgaaggcg
      121 agcaggagga gaagaactcg gaaaactcct cggcggagag ggatttagcc gatgtcaagt
      181 cgtcgttggt caatgaatca gagacgaatc aaaacagctc ctccgattcc gaggcggaaa
      241 gacggcctcc gcctcgctcc gaaagtttcc gagataaatc ccgggaaagt ttggaagaag
      301 cggccaagag gcaagatgga gggctcttta aggggccacc gtatcccggc taccccttca
      361 tcatgatccc cgacctgacg agcccctacc tccccaacgg atcgctctcg cccaccgccc
      421 gaacctatct tcagatgaaa tggcctctgc tcgatgtcca agcaggaagc ctccagagca
      481 gacaagccct caaggatgcc cgctcacctt cgccagcaca catcgtttcg aacaaagtgc
      541 cggtggtgca gcacccccac catgtccacc cactcacacc tctcatcacg tacagcaatg
      601 aacacttcac cccgggaaat ccacctccgc acttaccagc tgacgtagac cccaaaacag
      661 gaattccacg gcctccgcac cctccagata tctctccata ttacccgctg tcgcccggca
      721 ccgtaggaca aatcccccat ccgctaggat ggcaaggtca gcctgtgtac ccaatcacga
      781 caggaggatt cagacacccc taccccacag cgctgacagt caacgcgtct atgtctaggt
      841 tccctcccca catggtccct ccccatcaca ctctgcacac gaccggaatc ccccacccgg
      901 ccattgtcac accgacagtc aagcaggagt cctcacagag tgacgtcggc tcactccata
      961 gctcaaagca tcaggactcc aagaaggaag aagagaagaa aaagccccac ataaagaagc
     1021 cccttaatgc attcatgttg tatatgaagg agatgagagc gaaggtggtg gctgagtgca
     1081 cattgaaaga gagtgcagcc atcaaccaga tcctcgggcg caggtggcac gccctgtcca
     1141 gggaagaaca ggcaaagtac tacgagctag cccggaagga acgacagctt cacatgcagc
     1201 tgtaccctgg ctggtctgca cgggataact atggaaagaa gaagaagaga aaaagagaca
     1261 agcagccggg ggagaccaat gaacacagcg aatgtttcct aaatccttgc ctttcgcttc
     1321 ctccgatcac aggagaaaaa aaaagtgcgt tcgctacata caaggtgaag gcagctgcct
     1381 cagcccaccc tcttcagatg gaagcttact agactcacct cccccctcac cgcatctgct
     1441 aggctcccct ccccaagacg ccaagtcaca gactgagcag acacagccgc tctcgctgtc
     1501 cctgaagcct gatcctctgg cccacctgtc catgatgcct ccaccacccg cgctcctgct
     1561 ggctgaagct gcccacggca aggcctctgc cctctgtccc aacggggccc tggacctgcc
     1621 acctgccact ttgcagccgt ccatggtccc ttcctcatcg ctcgcacaac catcaacttc
     1681 ttccttacat tcccacaact cgctggct
//
