LOCUS       XM_039090388            3523 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus transcription factor 7 like 2
            (Tcf7l2), transcript variant X44, mRNA.
ACCESSION   XM_039090388
VERSION     XM_039090388.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039090388.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3523
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3523
                     /gene="Tcf7l2"
                     /note="transcription factor 7 like 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 26 ESTs, 3 long SRA reads, 6 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 76 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:679869"
                     /db_xref="RGD:1583621"
     CDS             45..1430
                     /gene="Tcf7l2"
                     /codon_start=1
                     /product="transcription factor 7-like 2 isoform X41"
                     /protein_id="XP_038946316.1"
                     /db_xref="GeneID:679869"
                     /db_xref="RGD:1583621"
                     /translation="MPQLNGGGGDDLGANDELISFKDEGEQEEKNSENSSAERDLADV
                     KSSLVNESETNQNSSSDSEAERRPPPRSESFRDKSRESLEEAAKRQDGGLFKGPPYPG
                     YPFIMIPDLTSPYLPNGSLSPTARTLHFQSGSTHYSAYKTIEHQIAIQYLQMKWPLLD
                     VQAGSLQSRQALKDARSPSPAHIVSNKVPVVQHPHHVHPLTPLITYSNEHFTPGNPPP
                     HLPADVDPKTGIPRPPHPPDISPYYPLSPGTVGQIPHPLGWQGQPVYPITTGGFRHPY
                     PTALTVNASMSRFPPHMVPPHHTLHTTGIPHPAIVTPTVKQESSQSDVGSLHSSKHQD
                     SKKEEEKKKPHIKKPLNAFMLYMKEMRAKVVAECTLKESAAINQILGRRWHALSREEQ
                     AKYYELARKERQLHMQLYPGWSARDNYGKKKKRKRDKQPGETNGEKKSAFATYKVKAA
                     ASAHPLQMEAY"
ORIGIN      
        1 cttcattttt cttccaaaat tgctgctggt gggtgaaaaa aaaaatgccg cagttgaacg
       61 gcggtggagg agatgaccta ggcgctaacg acgaactgat ctccttcaaa gacgaaggcg
      121 agcaggagga gaagaactcg gaaaactcct cggcggagag ggatttagcc gatgtcaagt
      181 cgtcgttggt caatgaatca gagacgaatc aaaacagctc ctccgattcc gaggcggaaa
      241 gacggcctcc gcctcgctcc gaaagtttcc gagataaatc ccgggaaagt ttggaagaag
      301 cggccaagag gcaagatgga gggctcttta aggggccacc gtatcccggc taccccttca
      361 tcatgatccc cgacctgacg agcccctacc tccccaacgg atcgctctcg cccaccgccc
      421 gaaccctcca ttttcaatcc ggcagcactc attactctgc gtacaaaacg attgaacacc
      481 agattgcaat tcagtatctt cagatgaaat ggcctctgct cgatgtccaa gcaggaagcc
      541 tccagagcag acaagccctc aaggatgccc gctcaccttc gccagcacac atcgtttcga
      601 acaaagtgcc ggtggtgcag cacccccacc atgtccaccc actcacacct ctcatcacgt
      661 acagcaatga acacttcacc ccgggaaatc cacctccgca cttaccagct gacgtagacc
      721 ccaaaacagg aattccacgg cctccgcacc ctccagatat ctctccatat tacccgctgt
      781 cgcccggcac cgtaggacaa atcccccatc cgctaggatg gcaaggtcag cctgtgtacc
      841 caatcacgac aggaggattc agacacccct accccacagc gctgacagtc aacgcgtcta
      901 tgtctaggtt ccctccccac atggtccctc cccatcacac tctgcacacg accggaatcc
      961 cccacccggc cattgtcaca ccgacagtca agcaggagtc ctcacagagt gacgtcggct
     1021 cactccatag ctcaaagcat caggactcca agaaggaaga agagaagaaa aagccccaca
     1081 taaagaagcc ccttaatgca ttcatgttgt atatgaagga gatgagagcg aaggtggtgg
     1141 ctgagtgcac attgaaagag agtgcagcca tcaaccagat cctcgggcgc aggtggcacg
     1201 ccctgtccag ggaagaacag gcaaagtact acgagctagc ccggaaggaa cgacagcttc
     1261 acatgcagct gtaccctggc tggtctgcac gggataacta tggaaagaag aagaagagaa
     1321 aaagagacaa gcagccgggg gagaccaatg gagaaaaaaa aagtgcgttc gctacataca
     1381 aggtgaaggc agctgcctca gcccaccctc ttcagatgga agcttactag actcacctcc
     1441 cccctcaccg catctgctag gctcccctcc ccaagacgcc aagtcacaga ctgagcagac
     1501 acagccgctc tcgctgtccc tgaagcctga tcctctggcc cacctgtcca tgatgcctcc
     1561 accacccgcg ctcctgctgg ctgaagctgc ccacggcaag gcctctgccc tctgtcccaa
     1621 cggggccctg gacctgccac ctgccacttt gcagccgtcc atggtccctt cctcatcgct
     1681 cgcacaacca tcaacttctt ccttacattc ccacaactcg ctggctggga cgcaacccca
     1741 gcctctgtct ctggtgacca agtctttaga atagcttcgc ctcctcgtct tccgtgcccc
     1801 tgcttgattg aagtgtttcc ttctggttct tggttcgccc ttcccccgct tggaaagcct
     1861 tttttcttgt tctttaattt tgtgccactg tggctacatg agttaatgtt tatggagttc
     1921 attggtcaat atttgaccca ttcttatttc aatttctcct tttaaatatg tagatgagag
     1981 aaacctcatg attctaccaa aatttttatc aacagctgtt taaagtcttt gtagcgttta
     2041 aaaaaatata taaatatata tatacataac tgttatgtag ttcggatagc ttagttttaa
     2101 aagactgatt taaggaacaa aaagaaaaag aaaagagaga gaagcaactt tgaagcaccc
     2161 tccagaagga gttggttctg tattatttgt attaaatacg agcttgcgaa ccaatcattt
     2221 ccatcttggt atttaaaccg cgagggcacg atgaatgcag tgccgtttct ttctttcttt
     2281 tttcctccca tgtgaaacaa cttttattgt gatgttactt gttattgttt aaatgtacag
     2341 aaacaaaggg ttaaaatgtg ttaatatacc tttttccatg gtgttgttct ttttgggggg
     2401 aggggacgct actcaacatg aatggaatca acactgttgg accagtagta tttattactt
     2461 tagaggttgc ttgtccgtac ctgtccgtcc gtccaatttt aaatattgtt tccctttttt
     2521 ttttgaaact gtataaagtc aaccccccca acataagcat cttatataca acaactcatt
     2581 tgtacaaggt ttttaagttt atatataaat tgtgtatata tttttttgtt tccttttctt
     2641 gacttttcgt ttgtttgttt gtttctgtat aaaacccaga tgccaccaaa tggacattga
     2701 tagctgcatt aaggatcagt agcattaaca aaagttgctt taaaagccat tacgtaaaac
     2761 aagacttgaa cattagcgag agggtcgagc agagcagccg tgggaaccac cccgtttccc
     2821 cttggacctc ctagtcaatt accctgtgct cttagaacat ggactgaccg tgtgcaaaac
     2881 tttttatgtg ccaaaattct cagtgacttt agctttctcc ctcctttttg atgccgtact
     2941 ttctgttcgc catgttttgc tgtgatgtta catagataga tttgtatgta gttttaatgt
     3001 cacctataac aaaatgtgtt tggtagcaga ctgtccagaa agcattttaa atgaagaggt
     3061 ctaaaccctt aagggccaaa aattctgtat attagattac tcttaaaatg aaaaagaaaa
     3121 aaagtaaaaa aaaaaaaaaa cccagctgcc gcttctgtgt acaagtatga catacgagta
     3181 ggtagcgaac tttaaaaaca agagaaccta ggcatgccga tgttgtaaaa tgctgtataa
     3241 agccgagacc tgtcttttca gtgccatcgt agttgacatg aagcgattgt aaaactgtct
     3301 ccggttttct ctggtttatt aaaatgctaa ctataacaat ttttttttgt gaatactttg
     3361 aatgtttcct aacagttgtg gtgttaccgt tctgtttgat gcttattcca agttcatttt
     3421 tggatggttt ggaagccatt ttgtaatgaa taaatgtcca tgctgtacag tatctgtagc
     3481 atgccgttct ggattaataa aagcaactta gtatgtgcag aaa
//
