LOCUS       XM_039090379            3535 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus transcription factor 7 like 2
            (Tcf7l2), transcript variant X42, mRNA.
ACCESSION   XM_039090379
VERSION     XM_039090379.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039090379.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3535
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3535
                     /gene="Tcf7l2"
                     /note="transcription factor 7 like 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 30 ESTs, 3 long SRA reads, 6 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 96 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:679869"
                     /db_xref="RGD:1583621"
     CDS             45..1442
                     /gene="Tcf7l2"
                     /codon_start=1
                     /product="transcription factor 7-like 2 isoform X39"
                     /protein_id="XP_038946307.1"
                     /db_xref="GeneID:679869"
                     /db_xref="RGD:1583621"
                     /translation="MPQLNGGGGDDLGANDELISFKDEGEQEEKNSENSSAERDLADV
                     KSSLVNESETNQNSSSDSEAERRPPPRSESFRDKSRESLEEAAKRQDGGLFKGPPYPG
                     YPFIMIPDLTSPYLPNGSLSPTARTLHFQSGSTHYSAYKTIEHQIAIQYLQMKWPLLD
                     VQAGSLQSRQALKDARSPSPAHIVSNKVPVVQHPHHVHPLTPLITYSNEHFTPGNPPP
                     HLPADVDPKTGIPRPPHPPDISPYYPLSPGTVGQIPHPLGWLVPQQGQPVYPITTGGF
                     RHPYPTALTVNASMSRFPPHMVPPHHTLHTTGIPHPAIVTPTVKQESSQSDVGSLHSS
                     KHQDSKKEEEKKKPHIKKPLNAFMLYMKEMRAKVVAECTLKESAAINQILGRRWHALS
                     REEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKRDKQPGETNGEKKSAFATYK
                     VKAAASAHPLQMEAY"
ORIGIN      
        1 cttcattttt cttccaaaat tgctgctggt gggtgaaaaa aaaaatgccg cagttgaacg
       61 gcggtggagg agatgaccta ggcgctaacg acgaactgat ctccttcaaa gacgaaggcg
      121 agcaggagga gaagaactcg gaaaactcct cggcggagag ggatttagcc gatgtcaagt
      181 cgtcgttggt caatgaatca gagacgaatc aaaacagctc ctccgattcc gaggcggaaa
      241 gacggcctcc gcctcgctcc gaaagtttcc gagataaatc ccgggaaagt ttggaagaag
      301 cggccaagag gcaagatgga gggctcttta aggggccacc gtatcccggc taccccttca
      361 tcatgatccc cgacctgacg agcccctacc tccccaacgg atcgctctcg cccaccgccc
      421 gaaccctcca ttttcaatcc ggcagcactc attactctgc gtacaaaacg attgaacacc
      481 agattgcaat tcagtatctt cagatgaaat ggcctctgct cgatgtccaa gcaggaagcc
      541 tccagagcag acaagccctc aaggatgccc gctcaccttc gccagcacac atcgtttcga
      601 acaaagtgcc ggtggtgcag cacccccacc atgtccaccc actcacacct ctcatcacgt
      661 acagcaatga acacttcacc ccgggaaatc cacctccgca cttaccagct gacgtagacc
      721 ccaaaacagg aattccacgg cctccgcacc ctccagatat ctctccatat tacccgctgt
      781 cgcccggcac cgtaggacaa atcccccatc cgctaggatg gttagtacca cagcaaggtc
      841 agcctgtgta cccaatcacg acaggaggat tcagacaccc ctaccccaca gcgctgacag
      901 tcaacgcgtc tatgtctagg ttccctcccc acatggtccc tccccatcac actctgcaca
      961 cgaccggaat cccccacccg gccattgtca caccgacagt caagcaggag tcctcacaga
     1021 gtgacgtcgg ctcactccat agctcaaagc atcaggactc caagaaggaa gaagagaaga
     1081 aaaagcccca cataaagaag ccccttaatg cattcatgtt gtatatgaag gagatgagag
     1141 cgaaggtggt ggctgagtgc acattgaaag agagtgcagc catcaaccag atcctcgggc
     1201 gcaggtggca cgccctgtcc agggaagaac aggcaaagta ctacgagcta gcccggaagg
     1261 aacgacagct tcacatgcag ctgtaccctg gctggtctgc acgggataac tatggaaaga
     1321 agaagaagag aaaaagagac aagcagccgg gggagaccaa tggagaaaaa aaaagtgcgt
     1381 tcgctacata caaggtgaag gcagctgcct cagcccaccc tcttcagatg gaagcttact
     1441 agactcacct cccccctcac cgcatctgct aggctcccct ccccaagacg ccaagtcaca
     1501 gactgagcag acacagccgc tctcgctgtc cctgaagcct gatcctctgg cccacctgtc
     1561 catgatgcct ccaccacccg cgctcctgct ggctgaagct gcccacggca aggcctctgc
     1621 cctctgtccc aacggggccc tggacctgcc acctgccact ttgcagccgt ccatggtccc
     1681 ttcctcatcg ctcgcacaac catcaacttc ttccttacat tcccacaact cgctggctgg
     1741 gacgcaaccc cagcctctgt ctctggtgac caagtcttta gaatagcttc gcctcctcgt
     1801 cttccgtgcc cctgcttgat tgaagtgttt ccttctggtt cttggttcgc ccttcccccg
     1861 cttggaaagc cttttttctt gttctttaat tttgtgccac tgtggctaca tgagttaatg
     1921 tttatggagt tcattggtca atatttgacc cattcttatt tcaatttctc cttttaaata
     1981 tgtagatgag agaaacctca tgattctacc aaaattttta tcaacagctg tttaaagtct
     2041 ttgtagcgtt taaaaaaata tataaatata tatatacata actgttatgt agttcggata
     2101 gcttagtttt aaaagactga tttaaggaac aaaaagaaaa agaaaagaga gagaagcaac
     2161 tttgaagcac cctccagaag gagttggttc tgtattattt gtattaaata cgagcttgcg
     2221 aaccaatcat ttccatcttg gtatttaaac cgcgagggca cgatgaatgc agtgccgttt
     2281 ctttctttct tttttcctcc catgtgaaac aacttttatt gtgatgttac ttgttattgt
     2341 ttaaatgtac agaaacaaag ggttaaaatg tgttaatata cctttttcca tggtgttgtt
     2401 ctttttgggg ggaggggacg ctactcaaca tgaatggaat caacactgtt ggaccagtag
     2461 tatttattac tttagaggtt gcttgtccgt acctgtccgt ccgtccaatt ttaaatattg
     2521 tttccctttt ttttttgaaa ctgtataaag tcaacccccc caacataagc atcttatata
     2581 caacaactca tttgtacaag gtttttaagt ttatatataa attgtgtata tatttttttg
     2641 tttccttttc ttgacttttc gtttgtttgt ttgtttctgt ataaaaccca gatgccacca
     2701 aatggacatt gatagctgca ttaaggatca gtagcattaa caaaagttgc tttaaaagcc
     2761 attacgtaaa acaagacttg aacattagcg agagggtcga gcagagcagc cgtgggaacc
     2821 accccgtttc cccttggacc tcctagtcaa ttaccctgtg ctcttagaac atggactgac
     2881 cgtgtgcaaa actttttatg tgccaaaatt ctcagtgact ttagctttct ccctcctttt
     2941 tgatgccgta ctttctgttc gccatgtttt gctgtgatgt tacatagata gatttgtatg
     3001 tagttttaat gtcacctata acaaaatgtg tttggtagca gactgtccag aaagcatttt
     3061 aaatgaagag gtctaaaccc ttaagggcca aaaattctgt atattagatt actcttaaaa
     3121 tgaaaaagaa aaaaagtaaa aaaaaaaaaa aacccagctg ccgcttctgt gtacaagtat
     3181 gacatacgag taggtagcga actttaaaaa caagagaacc taggcatgcc gatgttgtaa
     3241 aatgctgtat aaagccgaga cctgtctttt cagtgccatc gtagttgaca tgaagcgatt
     3301 gtaaaactgt ctccggtttt ctctggttta ttaaaatgct aactataaca attttttttt
     3361 gtgaatactt tgaatgtttc ctaacagttg tggtgttacc gttctgtttg atgcttattc
     3421 caagttcatt tttggatggt ttggaagcca ttttgtaatg aataaatgtc catgctgtac
     3481 agtatctgta gcatgccgtt ctggattaat aaaagcaact tagtatgtgc agaaa
//
