LOCUS       XM_039090377            3550 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus transcription factor 7 like 2
            (Tcf7l2), transcript variant X41, mRNA.
ACCESSION   XM_039090377
VERSION     XM_039090377.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039090377.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3550
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3550
                     /gene="Tcf7l2"
                     /note="transcription factor 7 like 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 27 ESTs, 3 long SRA reads, 6 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 78 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:679869"
                     /db_xref="RGD:1583621"
     CDS             45..1457
                     /gene="Tcf7l2"
                     /codon_start=1
                     /product="transcription factor 7-like 2 isoform X38"
                     /protein_id="XP_038946305.1"
                     /db_xref="GeneID:679869"
                     /db_xref="RGD:1583621"
                     /translation="MPQLNGGGGDDLGANDELISFKDEGEQEEKNSENSSAERDLADV
                     KSSLVNESETNQNSSSDSEAERRPPPRSESFRDKSRESLEEAAKRQDGGLFKGPPYPG
                     YPFIMIPDLTSPYLPNGSLSPTARTLHFQSGSTHYSAYKTIEHQIAIQYLQMKWPLLD
                     VQAGSLQSRQALKDARSPSPAHIVSNKVPVVQHPHHVHPLTPLITYSNEHFTPGNPPP
                     HLPADVDPKTGIPRPPHPPDISPYYPLSPGTVGQIPHPLGWLVPQQGQPVYPITTGGF
                     RHPYPTALTVNASMSSFLSSRFPPHMVPPHHTLHTTGIPHPAIVTPTVKQESSQSDVG
                     SLHSSKHQDSKKEEEKKKPHIKKPLNAFMLYMKEMRAKVVAECTLKESAAINQILGRR
                     WHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKRDKQPGETNGEKKSA
                     FATYKVKAAASAHPLQMEAY"
ORIGIN      
        1 cttcattttt cttccaaaat tgctgctggt gggtgaaaaa aaaaatgccg cagttgaacg
       61 gcggtggagg agatgaccta ggcgctaacg acgaactgat ctccttcaaa gacgaaggcg
      121 agcaggagga gaagaactcg gaaaactcct cggcggagag ggatttagcc gatgtcaagt
      181 cgtcgttggt caatgaatca gagacgaatc aaaacagctc ctccgattcc gaggcggaaa
      241 gacggcctcc gcctcgctcc gaaagtttcc gagataaatc ccgggaaagt ttggaagaag
      301 cggccaagag gcaagatgga gggctcttta aggggccacc gtatcccggc taccccttca
      361 tcatgatccc cgacctgacg agcccctacc tccccaacgg atcgctctcg cccaccgccc
      421 gaaccctcca ttttcaatcc ggcagcactc attactctgc gtacaaaacg attgaacacc
      481 agattgcaat tcagtatctt cagatgaaat ggcctctgct cgatgtccaa gcaggaagcc
      541 tccagagcag acaagccctc aaggatgccc gctcaccttc gccagcacac atcgtttcga
      601 acaaagtgcc ggtggtgcag cacccccacc atgtccaccc actcacacct ctcatcacgt
      661 acagcaatga acacttcacc ccgggaaatc cacctccgca cttaccagct gacgtagacc
      721 ccaaaacagg aattccacgg cctccgcacc ctccagatat ctctccatat tacccgctgt
      781 cgcccggcac cgtaggacaa atcccccatc cgctaggatg gttagtacca cagcaaggtc
      841 agcctgtgta cccaatcacg acaggaggat tcagacaccc ctaccccaca gcgctgacag
      901 tcaacgcgtc tatgtctagc tttctgtctt ctaggttccc tccccacatg gtccctcccc
      961 atcacactct gcacacgacc ggaatccccc acccggccat tgtcacaccg acagtcaagc
     1021 aggagtcctc acagagtgac gtcggctcac tccatagctc aaagcatcag gactccaaga
     1081 aggaagaaga gaagaaaaag ccccacataa agaagcccct taatgcattc atgttgtata
     1141 tgaaggagat gagagcgaag gtggtggctg agtgcacatt gaaagagagt gcagccatca
     1201 accagatcct cgggcgcagg tggcacgccc tgtccaggga agaacaggca aagtactacg
     1261 agctagcccg gaaggaacga cagcttcaca tgcagctgta ccctggctgg tctgcacggg
     1321 ataactatgg aaagaagaag aagagaaaaa gagacaagca gccgggggag accaatggag
     1381 aaaaaaaaag tgcgttcgct acatacaagg tgaaggcagc tgcctcagcc caccctcttc
     1441 agatggaagc ttactagact cacctccccc ctcaccgcat ctgctaggct cccctcccca
     1501 agacgccaag tcacagactg agcagacaca gccgctctcg ctgtccctga agcctgatcc
     1561 tctggcccac ctgtccatga tgcctccacc acccgcgctc ctgctggctg aagctgccca
     1621 cggcaaggcc tctgccctct gtcccaacgg ggccctggac ctgccacctg ccactttgca
     1681 gccgtccatg gtcccttcct catcgctcgc acaaccatca acttcttcct tacattccca
     1741 caactcgctg gctgggacgc aaccccagcc tctgtctctg gtgaccaagt ctttagaata
     1801 gcttcgcctc ctcgtcttcc gtgcccctgc ttgattgaag tgtttccttc tggttcttgg
     1861 ttcgcccttc ccccgcttgg aaagcctttt ttcttgttct ttaattttgt gccactgtgg
     1921 ctacatgagt taatgtttat ggagttcatt ggtcaatatt tgacccattc ttatttcaat
     1981 ttctcctttt aaatatgtag atgagagaaa cctcatgatt ctaccaaaat ttttatcaac
     2041 agctgtttaa agtctttgta gcgtttaaaa aaatatataa atatatatat acataactgt
     2101 tatgtagttc ggatagctta gttttaaaag actgatttaa ggaacaaaaa gaaaaagaaa
     2161 agagagagaa gcaactttga agcaccctcc agaaggagtt ggttctgtat tatttgtatt
     2221 aaatacgagc ttgcgaacca atcatttcca tcttggtatt taaaccgcga gggcacgatg
     2281 aatgcagtgc cgtttctttc tttctttttt cctcccatgt gaaacaactt ttattgtgat
     2341 gttacttgtt attgtttaaa tgtacagaaa caaagggtta aaatgtgtta atataccttt
     2401 ttccatggtg ttgttctttt tggggggagg ggacgctact caacatgaat ggaatcaaca
     2461 ctgttggacc agtagtattt attactttag aggttgcttg tccgtacctg tccgtccgtc
     2521 caattttaaa tattgtttcc cttttttttt tgaaactgta taaagtcaac ccccccaaca
     2581 taagcatctt atatacaaca actcatttgt acaaggtttt taagtttata tataaattgt
     2641 gtatatattt ttttgtttcc ttttcttgac ttttcgtttg tttgtttgtt tctgtataaa
     2701 acccagatgc caccaaatgg acattgatag ctgcattaag gatcagtagc attaacaaaa
     2761 gttgctttaa aagccattac gtaaaacaag acttgaacat tagcgagagg gtcgagcaga
     2821 gcagccgtgg gaaccacccc gtttcccctt ggacctccta gtcaattacc ctgtgctctt
     2881 agaacatgga ctgaccgtgt gcaaaacttt ttatgtgcca aaattctcag tgactttagc
     2941 tttctccctc ctttttgatg ccgtactttc tgttcgccat gttttgctgt gatgttacat
     3001 agatagattt gtatgtagtt ttaatgtcac ctataacaaa atgtgtttgg tagcagactg
     3061 tccagaaagc attttaaatg aagaggtcta aacccttaag ggccaaaaat tctgtatatt
     3121 agattactct taaaatgaaa aagaaaaaaa gtaaaaaaaa aaaaaaaccc agctgccgct
     3181 tctgtgtaca agtatgacat acgagtaggt agcgaacttt aaaaacaaga gaacctaggc
     3241 atgccgatgt tgtaaaatgc tgtataaagc cgagacctgt cttttcagtg ccatcgtagt
     3301 tgacatgaag cgattgtaaa actgtctccg gttttctctg gtttattaaa atgctaacta
     3361 taacaatttt tttttgtgaa tactttgaat gtttcctaac agttgtggtg ttaccgttct
     3421 gtttgatgct tattccaagt tcatttttgg atggtttgga agccattttg taatgaataa
     3481 atgtccatgc tgtacagtat ctgtagcatg ccgttctgga ttaataaaag caacttagta
     3541 tgtgcagaaa
//
