LOCUS       XM_039090346            3589 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus transcription factor 7 like 2
            (Tcf7l2), transcript variant X35, mRNA.
ACCESSION   XM_039090346
VERSION     XM_039090346.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3589
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3589
                     /gene="Tcf7l2"
                     /note="transcription factor 7 like 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 31 ESTs, 4 long SRA reads, 6 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 51 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:679869"
                     /db_xref="RGD:1583621"
     CDS             45..1496
                     /gene="Tcf7l2"
                     /codon_start=1
                     /product="transcription factor 7-like 2 isoform X32"
                     /protein_id="XP_038946274.1"
                     /db_xref="GeneID:679869"
                     /db_xref="RGD:1583621"
                     /translation="MPQLNGGGGDDLGANDELISFKDEGEQEEKNSENSSAERDLADV
                     KSSLVNESETNQNSSSDSEAERRPPPRSESFRDKSRESLEEAAKRQDGGLFKGPPYPG
                     YPFIMIPDLTSPYLPNGSLSPTARTLHFQSGSTHYSAYKTIEHQIAIQYLQMKWPLLD
                     VQAGSLQSRQALKDARSPSPAHIVSNKVPVVQHPHHVHPLTPLITYSNEHFTPGNPPP
                     HLPADVDPKTGIPRPPHPPDISPYYPLSPGTVGQIPHPLGWQGQPVYPITTGGFRHPY
                     PTALTVNASMSSFLSSRFPPHMVPPHHTLHTTGIPHPAIVTPTVKQESSQSDVGSLHS
                     SKHQDSKKEEEKKKPHIKKPLNAFMLYMKEMRAKVVAECTLKESAAINQILGRRWHAL
                     SREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKRDKQPGETNEHSECFLNPC
                     LSLPPITGEKKSAFATYKVKAAASAHPLQMEAY"
ORIGIN      
        1 cttcattttt cttccaaaat tgctgctggt gggtgaaaaa aaaaatgccg cagttgaacg
       61 gcggtggagg agatgaccta ggcgctaacg acgaactgat ctccttcaaa gacgaaggcg
      121 agcaggagga gaagaactcg gaaaactcct cggcggagag ggatttagcc gatgtcaagt
      181 cgtcgttggt caatgaatca gagacgaatc aaaacagctc ctccgattcc gaggcggaaa
      241 gacggcctcc gcctcgctcc gaaagtttcc gagataaatc ccgggaaagt ttggaagaag
      301 cggccaagag gcaagatgga gggctcttta aggggccacc gtatcccggc taccccttca
      361 tcatgatccc cgacctgacg agcccctacc tccccaacgg atcgctctcg cccaccgccc
      421 gaaccctcca ttttcaatcc ggcagcactc attactctgc gtacaaaacg attgaacacc
      481 agattgcaat tcagtatctt cagatgaaat ggcctctgct cgatgtccaa gcaggaagcc
      541 tccagagcag acaagccctc aaggatgccc gctcaccttc gccagcacac atcgtttcga
      601 acaaagtgcc ggtggtgcag cacccccacc atgtccaccc actcacacct ctcatcacgt
      661 acagcaatga acacttcacc ccgggaaatc cacctccgca cttaccagct gacgtagacc
      721 ccaaaacagg aattccacgg cctccgcacc ctccagatat ctctccatat tacccgctgt
      781 cgcccggcac cgtaggacaa atcccccatc cgctaggatg gcaaggtcag cctgtgtacc
      841 caatcacgac aggaggattc agacacccct accccacagc gctgacagtc aacgcgtcta
      901 tgtctagctt tctgtcttct aggttccctc cccacatggt ccctccccat cacactctgc
      961 acacgaccgg aatcccccac ccggccattg tcacaccgac agtcaagcag gagtcctcac
     1021 agagtgacgt cggctcactc catagctcaa agcatcagga ctccaagaag gaagaagaga
     1081 agaaaaagcc ccacataaag aagcccctta atgcattcat gttgtatatg aaggagatga
     1141 gagcgaaggt ggtggctgag tgcacattga aagagagtgc agccatcaac cagatcctcg
     1201 ggcgcaggtg gcacgccctg tccagggaag aacaggcaaa gtactacgag ctagcccgga
     1261 aggaacgaca gcttcacatg cagctgtacc ctggctggtc tgcacgggat aactatggaa
     1321 agaagaagaa gagaaaaaga gacaagcagc cgggggagac caatgaacac agcgaatgtt
     1381 tcctaaatcc ttgcctttcg cttcctccga tcacaggaga aaaaaaaagt gcgttcgcta
     1441 catacaaggt gaaggcagct gcctcagccc accctcttca gatggaagct tactagactc
     1501 acctcccccc tcaccgcatc tgctaggctc ccctccccaa gacgccaagt cacagactga
     1561 gcagacacag ccgctctcgc tgtccctgaa gcctgatcct ctggcccacc tgtccatgat
     1621 gcctccacca cccgcgctcc tgctggctga agctgcccac ggcaaggcct ctgccctctg
     1681 tcccaacggg gccctggacc tgccacctgc cactttgcag ccgtccatgg tcccttcctc
     1741 atcgctcgca caaccatcaa cttcttcctt acattcccac aactcgctgg ctgggacgca
     1801 accccagcct ctgtctctgg tgaccaagtc tttagaatag cttcgcctcc tcgtcttccg
     1861 tgcccctgct tgattgaagt gtttccttct ggttcttggt tcgcccttcc cccgcttgga
     1921 aagccttttt tcttgttctt taattttgtg ccactgtggc tacatgagtt aatgtttatg
     1981 gagttcattg gtcaatattt gacccattct tatttcaatt tctcctttta aatatgtaga
     2041 tgagagaaac ctcatgattc taccaaaatt tttatcaaca gctgtttaaa gtctttgtag
     2101 cgtttaaaaa aatatataaa tatatatata cataactgtt atgtagttcg gatagcttag
     2161 ttttaaaaga ctgatttaag gaacaaaaag aaaaagaaaa gagagagaag caactttgaa
     2221 gcaccctcca gaaggagttg gttctgtatt atttgtatta aatacgagct tgcgaaccaa
     2281 tcatttccat cttggtattt aaaccgcgag ggcacgatga atgcagtgcc gtttctttct
     2341 ttcttttttc ctcccatgtg aaacaacttt tattgtgatg ttacttgtta ttgtttaaat
     2401 gtacagaaac aaagggttaa aatgtgttaa tatacctttt tccatggtgt tgttcttttt
     2461 ggggggaggg gacgctactc aacatgaatg gaatcaacac tgttggacca gtagtattta
     2521 ttactttaga ggttgcttgt ccgtacctgt ccgtccgtcc aattttaaat attgtttccc
     2581 tttttttttt gaaactgtat aaagtcaacc cccccaacat aagcatctta tatacaacaa
     2641 ctcatttgta caaggttttt aagtttatat ataaattgtg tatatatttt tttgtttcct
     2701 tttcttgact tttcgtttgt ttgtttgttt ctgtataaaa cccagatgcc accaaatgga
     2761 cattgatagc tgcattaagg atcagtagca ttaacaaaag ttgctttaaa agccattacg
     2821 taaaacaaga cttgaacatt agcgagaggg tcgagcagag cagccgtggg aaccaccccg
     2881 tttccccttg gacctcctag tcaattaccc tgtgctctta gaacatggac tgaccgtgtg
     2941 caaaactttt tatgtgccaa aattctcagt gactttagct ttctccctcc tttttgatgc
     3001 cgtactttct gttcgccatg ttttgctgtg atgttacata gatagatttg tatgtagttt
     3061 taatgtcacc tataacaaaa tgtgtttggt agcagactgt ccagaaagca ttttaaatga
     3121 agaggtctaa acccttaagg gccaaaaatt ctgtatatta gattactctt aaaatgaaaa
     3181 agaaaaaaag taaaaaaaaa aaaaaaccca gctgccgctt ctgtgtacaa gtatgacata
     3241 cgagtaggta gcgaacttta aaaacaagag aacctaggca tgccgatgtt gtaaaatgct
     3301 gtataaagcc gagacctgtc ttttcagtgc catcgtagtt gacatgaagc gattgtaaaa
     3361 ctgtctccgg ttttctctgg tttattaaaa tgctaactat aacaattttt ttttgtgaat
     3421 actttgaatg tttcctaaca gttgtggtgt taccgttctg tttgatgctt attccaagtt
     3481 catttttgga tggtttggaa gccattttgt aatgaataaa tgtccatgct gtacagtatc
     3541 tgtagcatgc cgttctggat taataaaagc aacttagtat gtgcagaaa
//
