LOCUS       XM_039090344            3607 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus transcription factor 7 like 2
            (Tcf7l2), transcript variant X34, mRNA.
ACCESSION   XM_039090344
VERSION     XM_039090344.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039090344.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3607
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3607
                     /gene="Tcf7l2"
                     /note="transcription factor 7 like 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 29 ESTs, 3 long SRA reads, 4 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 35 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:679869"
                     /db_xref="RGD:1583621"
     CDS             45..1514
                     /gene="Tcf7l2"
                     /codon_start=1
                     /product="transcription factor 7-like 2 isoform X31"
                     /protein_id="XP_038946272.1"
                     /db_xref="GeneID:679869"
                     /db_xref="RGD:1583621"
                     /translation="MPQLNGGGGDDLGANDELISFKDEGEQEEKNSENSSAERDLADV
                     KSSLVNESETNQNSSSDSEAERRPPPRSESFRDKSRESLEEAAKRQDGGLFKGPPYPG
                     YPFIMIPDLTSPYLPNGSLSPTARTYLQMKWPLLDVQAGSLQSRQALKDARSPSPAHI
                     VSPLPCCTQGHACPHFYTPSDFTVSTQVFRDTKSSHSLQKVGEPWFLESNKVPVVQHP
                     HHVHPLTPLITYSNEHFTPGNPPPHLPADVDPKTGIPRPPHPPDISPYYPLSPGTVGQ
                     IPHPLGWLVPQQGQPVYPITTGGFRHPYPTALTVNASMSRFPPHMVPPHHTLHTTGIP
                     HPAIVTPTVKQESSQSDVGSLHSSKHQDSKKEEEKKKPHIKKPLNAFMLYMKEMRAKV
                     VAECTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKK
                     KKRKRDKQPGETNGEKKSAFATYKVKAAASAHPLQMEAY"
ORIGIN      
        1 cttcattttt cttccaaaat tgctgctggt gggtgaaaaa aaaaatgccg cagttgaacg
       61 gcggtggagg agatgaccta ggcgctaacg acgaactgat ctccttcaaa gacgaaggcg
      121 agcaggagga gaagaactcg gaaaactcct cggcggagag ggatttagcc gatgtcaagt
      181 cgtcgttggt caatgaatca gagacgaatc aaaacagctc ctccgattcc gaggcggaaa
      241 gacggcctcc gcctcgctcc gaaagtttcc gagataaatc ccgggaaagt ttggaagaag
      301 cggccaagag gcaagatgga gggctcttta aggggccacc gtatcccggc taccccttca
      361 tcatgatccc cgacctgacg agcccctacc tccccaacgg atcgctctcg cccaccgccc
      421 gaacctatct tcagatgaaa tggcctctgc tcgatgtcca agcaggaagc ctccagagca
      481 gacaagccct caaggatgcc cgctcacctt cgccagcaca catcgttagc cccctccctt
      541 gctgcactca gggccatgcc tgtccgcact tctacacccc ctcagacttc actgtcagca
      601 cgcaagtctt cagggacacg aaaagcagcc actccttaca aaaggttggg gagccctggt
      661 ttctggagtc gaacaaagtg ccggtggtgc agcaccccca ccatgtccac ccactcacac
      721 ctctcatcac gtacagcaat gaacacttca ccccgggaaa tccacctccg cacttaccag
      781 ctgacgtaga ccccaaaaca ggaattccac ggcctccgca ccctccagat atctctccat
      841 attacccgct gtcgcccggc accgtaggac aaatccccca tccgctagga tggttagtac
      901 cacagcaagg tcagcctgtg tacccaatca cgacaggagg attcagacac ccctacccca
      961 cagcgctgac agtcaacgcg tctatgtcta ggttccctcc ccacatggtc cctccccatc
     1021 acactctgca cacgaccgga atcccccacc cggccattgt cacaccgaca gtcaagcagg
     1081 agtcctcaca gagtgacgtc ggctcactcc atagctcaaa gcatcaggac tccaagaagg
     1141 aagaagagaa gaaaaagccc cacataaaga agccccttaa tgcattcatg ttgtatatga
     1201 aggagatgag agcgaaggtg gtggctgagt gcacattgaa agagagtgca gccatcaacc
     1261 agatcctcgg gcgcaggtgg cacgccctgt ccagggaaga acaggcaaag tactacgagc
     1321 tagcccggaa ggaacgacag cttcacatgc agctgtaccc tggctggtct gcacgggata
     1381 actatggaaa gaagaagaag agaaaaagag acaagcagcc gggggagacc aatggagaaa
     1441 aaaaaagtgc gttcgctaca tacaaggtga aggcagctgc ctcagcccac cctcttcaga
     1501 tggaagctta ctagactcac ctcccccctc accgcatctg ctaggctccc ctccccaaga
     1561 cgccaagtca cagactgagc agacacagcc gctctcgctg tccctgaagc ctgatcctct
     1621 ggcccacctg tccatgatgc ctccaccacc cgcgctcctg ctggctgaag ctgcccacgg
     1681 caaggcctct gccctctgtc ccaacggggc cctggacctg ccacctgcca ctttgcagcc
     1741 gtccatggtc ccttcctcat cgctcgcaca accatcaact tcttccttac attcccacaa
     1801 ctcgctggct gggacgcaac cccagcctct gtctctggtg accaagtctt tagaatagct
     1861 tcgcctcctc gtcttccgtg cccctgcttg attgaagtgt ttccttctgg ttcttggttc
     1921 gcccttcccc cgcttggaaa gccttttttc ttgttcttta attttgtgcc actgtggcta
     1981 catgagttaa tgtttatgga gttcattggt caatatttga cccattctta tttcaatttc
     2041 tccttttaaa tatgtagatg agagaaacct catgattcta ccaaaatttt tatcaacagc
     2101 tgtttaaagt ctttgtagcg tttaaaaaaa tatataaata tatatataca taactgttat
     2161 gtagttcgga tagcttagtt ttaaaagact gatttaagga acaaaaagaa aaagaaaaga
     2221 gagagaagca actttgaagc accctccaga aggagttggt tctgtattat ttgtattaaa
     2281 tacgagcttg cgaaccaatc atttccatct tggtatttaa accgcgaggg cacgatgaat
     2341 gcagtgccgt ttctttcttt cttttttcct cccatgtgaa acaactttta ttgtgatgtt
     2401 acttgttatt gtttaaatgt acagaaacaa agggttaaaa tgtgttaata tacctttttc
     2461 catggtgttg ttctttttgg ggggagggga cgctactcaa catgaatgga atcaacactg
     2521 ttggaccagt agtatttatt actttagagg ttgcttgtcc gtacctgtcc gtccgtccaa
     2581 ttttaaatat tgtttccctt ttttttttga aactgtataa agtcaacccc cccaacataa
     2641 gcatcttata tacaacaact catttgtaca aggtttttaa gtttatatat aaattgtgta
     2701 tatatttttt tgtttccttt tcttgacttt tcgtttgttt gtttgtttct gtataaaacc
     2761 cagatgccac caaatggaca ttgatagctg cattaaggat cagtagcatt aacaaaagtt
     2821 gctttaaaag ccattacgta aaacaagact tgaacattag cgagagggtc gagcagagca
     2881 gccgtgggaa ccaccccgtt tccccttgga cctcctagtc aattaccctg tgctcttaga
     2941 acatggactg accgtgtgca aaacttttta tgtgccaaaa ttctcagtga ctttagcttt
     3001 ctccctcctt tttgatgccg tactttctgt tcgccatgtt ttgctgtgat gttacataga
     3061 tagatttgta tgtagtttta atgtcaccta taacaaaatg tgtttggtag cagactgtcc
     3121 agaaagcatt ttaaatgaag aggtctaaac ccttaagggc caaaaattct gtatattaga
     3181 ttactcttaa aatgaaaaag aaaaaaagta aaaaaaaaaa aaaacccagc tgccgcttct
     3241 gtgtacaagt atgacatacg agtaggtagc gaactttaaa aacaagagaa cctaggcatg
     3301 ccgatgttgt aaaatgctgt ataaagccga gacctgtctt ttcagtgcca tcgtagttga
     3361 catgaagcga ttgtaaaact gtctccggtt ttctctggtt tattaaaatg ctaactataa
     3421 caattttttt ttgtgaatac tttgaatgtt tcctaacagt tgtggtgtta ccgttctgtt
     3481 tgatgcttat tccaagttca tttttggatg gtttggaagc cattttgtaa tgaataaatg
     3541 tccatgctgt acagtatctg tagcatgccg ttctggatta ataaaagcaa cttagtatgt
     3601 gcagaaa
//
