LOCUS       XM_039090283            3590 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus transcription factor 7 like 2
            (Tcf7l2), transcript variant X19, mRNA.
ACCESSION   XM_039090283
VERSION     XM_039090283.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039090283.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3590
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3590
                     /gene="Tcf7l2"
                     /note="transcription factor 7 like 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 34 ESTs, 3 long SRA reads, 19 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 82 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:679869"
                     /db_xref="RGD:1583621"
     CDS             45..1841
                     /gene="Tcf7l2"
                     /codon_start=1
                     /product="transcription factor 7-like 2 isoform X19"
                     /protein_id="XP_038946211.1"
                     /db_xref="GeneID:679869"
                     /db_xref="RGD:1583621"
                     /translation="MPQLNGGGGDDLGANDELISFKDEGEQEEKNSENSSAERDLADV
                     KSSLVNESETNQNSSSDSEAERRPPPRSESFRDKSRESLEEAAKRQDGGLFKGPPYPG
                     YPFIMIPDLTSPYLPNGSLSPTARTYLQMKWPLLDVQAGSLQSRQALKDARSPSPAHI
                     VSNKVPVVQHPHHVHPLTPLITYSNEHFTPGNPPPHLPADVDPKTGIPRPPHPPDISP
                     YYPLSPGTVGQIPHPLGWLVPQQGQPVYPITTGGFRHPYPTALTVNASMSRFPPHMVP
                     PHHTLHTTGIPHPAIVTPTVKQESSQSDVGSLHSSKHQDSKKEEEKKKPHIKKPLNAF
                     MLYMKEMRAKVVAECTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYP
                     GWSARDNYGKKKKRKRDKQPGETNEHSECFLNPCLSLPPITDLSAPKKCRARFGLDQQ
                     NNWCGPCRRKKKCVRYIQGEGSCLSPPSSDGSLLDSPPPSPHLLGSPPQDAKSQTEQT
                     QPLSLSLKPDPLAHLSMMPPPPALLLAEAAHGKASALCPNGALDLPPATLQPSMVPSS
                     SLAQPSTSSLHSHNSLAGTQPQPLSLVTKSLE"
ORIGIN      
        1 cttcattttt cttccaaaat tgctgctggt gggtgaaaaa aaaaatgccg cagttgaacg
       61 gcggtggagg agatgaccta ggcgctaacg acgaactgat ctccttcaaa gacgaaggcg
      121 agcaggagga gaagaactcg gaaaactcct cggcggagag ggatttagcc gatgtcaagt
      181 cgtcgttggt caatgaatca gagacgaatc aaaacagctc ctccgattcc gaggcggaaa
      241 gacggcctcc gcctcgctcc gaaagtttcc gagataaatc ccgggaaagt ttggaagaag
      301 cggccaagag gcaagatgga gggctcttta aggggccacc gtatcccggc taccccttca
      361 tcatgatccc cgacctgacg agcccctacc tccccaacgg atcgctctcg cccaccgccc
      421 gaacctatct tcagatgaaa tggcctctgc tcgatgtcca agcaggaagc ctccagagca
      481 gacaagccct caaggatgcc cgctcacctt cgccagcaca catcgtttcg aacaaagtgc
      541 cggtggtgca gcacccccac catgtccacc cactcacacc tctcatcacg tacagcaatg
      601 aacacttcac cccgggaaat ccacctccgc acttaccagc tgacgtagac cccaaaacag
      661 gaattccacg gcctccgcac cctccagata tctctccata ttacccgctg tcgcccggca
      721 ccgtaggaca aatcccccat ccgctaggat ggttagtacc acagcaaggt cagcctgtgt
      781 acccaatcac gacaggagga ttcagacacc cctaccccac agcgctgaca gtcaacgcgt
      841 ctatgtctag gttccctccc cacatggtcc ctccccatca cactctgcac acgaccggaa
      901 tcccccaccc ggccattgtc acaccgacag tcaagcagga gtcctcacag agtgacgtcg
      961 gctcactcca tagctcaaag catcaggact ccaagaagga agaagagaag aaaaagcccc
     1021 acataaagaa gccccttaat gcattcatgt tgtatatgaa ggagatgaga gcgaaggtgg
     1081 tggctgagtg cacattgaaa gagagtgcag ccatcaacca gatcctcggg cgcaggtggc
     1141 acgccctgtc cagggaagaa caggcaaagt actacgagct agcccggaag gaacgacagc
     1201 ttcacatgca gctgtaccct ggctggtctg cacgggataa ctatggaaag aagaagaaga
     1261 gaaaaagaga caagcagccg ggggagacca atgaacacag cgaatgtttc ctaaatcctt
     1321 gcctttcgct tcctccgatc acagacctga gcgctcctaa gaaatgccga gcgcgctttg
     1381 gccttgatca acagaataac tggtgcggcc cctgcaggag aaaaaaaaag tgcgttcgct
     1441 acatacaagg tgaaggcagc tgcctcagcc caccctcttc agatggaagc ttactagact
     1501 cacctccccc ctcaccgcat ctgctaggct cccctcccca agacgccaag tcacagactg
     1561 agcagacaca gccgctctcg ctgtccctga agcctgatcc tctggcccac ctgtccatga
     1621 tgcctccacc acccgcgctc ctgctggctg aagctgccca cggcaaggcc tctgccctct
     1681 gtcccaacgg ggccctggac ctgccacctg ccactttgca gccgtccatg gtcccttcct
     1741 catcgctcgc acaaccatca acttcttcct tacattccca caactcgctg gctgggacgc
     1801 aaccccagcc tctgtctctg gtgaccaagt ctttagaata gcttcgcctc ctcgtcttcc
     1861 gtgcccctgc ttgattgaag tgtttccttc tggttcttgg ttcgcccttc ccccgcttgg
     1921 aaagcctttt ttcttgttct ttaattttgt gccactgtgg ctacatgagt taatgtttat
     1981 ggagttcatt ggtcaatatt tgacccattc ttatttcaat ttctcctttt aaatatgtag
     2041 atgagagaaa cctcatgatt ctaccaaaat ttttatcaac agctgtttaa agtctttgta
     2101 gcgtttaaaa aaatatataa atatatatat acataactgt tatgtagttc ggatagctta
     2161 gttttaaaag actgatttaa ggaacaaaaa gaaaaagaaa agagagagaa gcaactttga
     2221 agcaccctcc agaaggagtt ggttctgtat tatttgtatt aaatacgagc ttgcgaacca
     2281 atcatttcca tcttggtatt taaaccgcga gggcacgatg aatgcagtgc cgtttctttc
     2341 tttctttttt cctcccatgt gaaacaactt ttattgtgat gttacttgtt attgtttaaa
     2401 tgtacagaaa caaagggtta aaatgtgtta atataccttt ttccatggtg ttgttctttt
     2461 tggggggagg ggacgctact caacatgaat ggaatcaaca ctgttggacc agtagtattt
     2521 attactttag aggttgcttg tccgtacctg tccgtccgtc caattttaaa tattgtttcc
     2581 cttttttttt tgaaactgta taaagtcaac ccccccaaca taagcatctt atatacaaca
     2641 actcatttgt acaaggtttt taagtttata tataaattgt gtatatattt ttttgtttcc
     2701 ttttcttgac ttttcgtttg tttgtttgtt tctgtataaa acccagatgc caccaaatgg
     2761 acattgatag ctgcattaag gatcagtagc attaacaaaa gttgctttaa aagccattac
     2821 gtaaaacaag acttgaacat tagcgagagg gtcgagcaga gcagccgtgg gaaccacccc
     2881 gtttcccctt ggacctccta gtcaattacc ctgtgctctt agaacatgga ctgaccgtgt
     2941 gcaaaacttt ttatgtgcca aaattctcag tgactttagc tttctccctc ctttttgatg
     3001 ccgtactttc tgttcgccat gttttgctgt gatgttacat agatagattt gtatgtagtt
     3061 ttaatgtcac ctataacaaa atgtgtttgg tagcagactg tccagaaagc attttaaatg
     3121 aagaggtcta aacccttaag ggccaaaaat tctgtatatt agattactct taaaatgaaa
     3181 aagaaaaaaa gtaaaaaaaa aaaaaaaccc agctgccgct tctgtgtaca agtatgacat
     3241 acgagtaggt agcgaacttt aaaaacaaga gaacctaggc atgccgatgt tgtaaaatgc
     3301 tgtataaagc cgagacctgt cttttcagtg ccatcgtagt tgacatgaag cgattgtaaa
     3361 actgtctccg gttttctctg gtttattaaa atgctaacta taacaatttt tttttgtgaa
     3421 tactttgaat gtttcctaac agttgtggtg ttaccgttct gtttgatgct tattccaagt
     3481 tcatttttgg atggtttgga agccattttg taatgaataa atgtccatgc tgtacagtat
     3541 ctgtagcatg ccgttctgga ttaataaaag caacttagta tgtgcagaaa
//
