LOCUS       XM_039090226            3746 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus transcription factor 7 like 2
            (Tcf7l2), transcript variant X9, mRNA.
ACCESSION   XM_039090226
VERSION     XM_039090226.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039090226.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3746
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3746
                     /gene="Tcf7l2"
                     /note="transcription factor 7 like 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 30 ESTs, 3 long SRA reads, 6 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 29 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:679869"
                     /db_xref="RGD:1583621"
     CDS             45..1997
                     /gene="Tcf7l2"
                     /codon_start=1
                     /product="transcription factor 7-like 2 isoform X9"
                     /protein_id="XP_038946154.1"
                     /db_xref="GeneID:679869"
                     /db_xref="RGD:1583621"
                     /translation="MPQLNGGGGDDLGANDELISFKDEGEQEEKNSENSSAERDLADV
                     KSSLVNESETNQNSSSDSEAERRPPPRSESFRDKSRESLEEAAKRQDGGLFKGPPYPG
                     YPFIMIPDLTSPYLPNGSLSPTARTYLQMKWPLLDVQAGSLQSRQALKDARSPSPAHI
                     VSPLPCCTQGHACPHFYTPSDFTVSTQVFRDTKSSHSLQKVGEPWFLESNKVPVVQHP
                     HHVHPLTPLITYSNEHFTPGNPPPHLPADVDPKTGIPRPPHPPDISPYYPLSPGTVGQ
                     IPHPLGWLVPQQGQPVYPITTGGFRHPYPTALTVNASMSSFLSSRFPPHMVPPHHTLH
                     TTGIPHPAIVTPTVKQESSQSDVGSLHSSKHQDSKKEEEKKKPHIKKPLNAFMLYMKE
                     MRAKVVAECTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARD
                     NYGKKKKRKRDKQPGETNEHSECFLNPCLSLPPITDLSAPKKCRARFGLDQQNNWCGP
                     CRRKKKCVRYIQGEGSCLSPPSSDGSLLDSPPPSPHLLGSPPQDAKSQTEQTQPLSLS
                     LKPDPLAHLSMMPPPPALLLAEAAHGKASALCPNGALDLPPATLQPSMVPSSSLAQPS
                     TSSLHSHNSLAGTQPQPLSLVTKSLE"
ORIGIN      
        1 cttcattttt cttccaaaat tgctgctggt gggtgaaaaa aaaaatgccg cagttgaacg
       61 gcggtggagg agatgaccta ggcgctaacg acgaactgat ctccttcaaa gacgaaggcg
      121 agcaggagga gaagaactcg gaaaactcct cggcggagag ggatttagcc gatgtcaagt
      181 cgtcgttggt caatgaatca gagacgaatc aaaacagctc ctccgattcc gaggcggaaa
      241 gacggcctcc gcctcgctcc gaaagtttcc gagataaatc ccgggaaagt ttggaagaag
      301 cggccaagag gcaagatgga gggctcttta aggggccacc gtatcccggc taccccttca
      361 tcatgatccc cgacctgacg agcccctacc tccccaacgg atcgctctcg cccaccgccc
      421 gaacctatct tcagatgaaa tggcctctgc tcgatgtcca agcaggaagc ctccagagca
      481 gacaagccct caaggatgcc cgctcacctt cgccagcaca catcgttagc cccctccctt
      541 gctgcactca gggccatgcc tgtccgcact tctacacccc ctcagacttc actgtcagca
      601 cgcaagtctt cagggacacg aaaagcagcc actccttaca aaaggttggg gagccctggt
      661 ttctggagtc gaacaaagtg ccggtggtgc agcaccccca ccatgtccac ccactcacac
      721 ctctcatcac gtacagcaat gaacacttca ccccgggaaa tccacctccg cacttaccag
      781 ctgacgtaga ccccaaaaca ggaattccac ggcctccgca ccctccagat atctctccat
      841 attacccgct gtcgcccggc accgtaggac aaatccccca tccgctagga tggttagtac
      901 cacagcaagg tcagcctgtg tacccaatca cgacaggagg attcagacac ccctacccca
      961 cagcgctgac agtcaacgcg tctatgtcta gctttctgtc ttctaggttc cctccccaca
     1021 tggtccctcc ccatcacact ctgcacacga ccggaatccc ccacccggcc attgtcacac
     1081 cgacagtcaa gcaggagtcc tcacagagtg acgtcggctc actccatagc tcaaagcatc
     1141 aggactccaa gaaggaagaa gagaagaaaa agccccacat aaagaagccc cttaatgcat
     1201 tcatgttgta tatgaaggag atgagagcga aggtggtggc tgagtgcaca ttgaaagaga
     1261 gtgcagccat caaccagatc ctcgggcgca ggtggcacgc cctgtccagg gaagaacagg
     1321 caaagtacta cgagctagcc cggaaggaac gacagcttca catgcagctg taccctggct
     1381 ggtctgcacg ggataactat ggaaagaaga agaagagaaa aagagacaag cagccggggg
     1441 agaccaatga acacagcgaa tgtttcctaa atccttgcct ttcgcttcct ccgatcacag
     1501 acctgagcgc tcctaagaaa tgccgagcgc gctttggcct tgatcaacag aataactggt
     1561 gcggcccctg caggagaaaa aaaaagtgcg ttcgctacat acaaggtgaa ggcagctgcc
     1621 tcagcccacc ctcttcagat ggaagcttac tagactcacc tcccccctca ccgcatctgc
     1681 taggctcccc tccccaagac gccaagtcac agactgagca gacacagccg ctctcgctgt
     1741 ccctgaagcc tgatcctctg gcccacctgt ccatgatgcc tccaccaccc gcgctcctgc
     1801 tggctgaagc tgcccacggc aaggcctctg ccctctgtcc caacggggcc ctggacctgc
     1861 cacctgccac tttgcagccg tccatggtcc cttcctcatc gctcgcacaa ccatcaactt
     1921 cttccttaca ttcccacaac tcgctggctg ggacgcaacc ccagcctctg tctctggtga
     1981 ccaagtcttt agaatagctt cgcctcctcg tcttccgtgc ccctgcttga ttgaagtgtt
     2041 tccttctggt tcttggttcg cccttccccc gcttggaaag ccttttttct tgttctttaa
     2101 ttttgtgcca ctgtggctac atgagttaat gtttatggag ttcattggtc aatatttgac
     2161 ccattcttat ttcaatttct ccttttaaat atgtagatga gagaaacctc atgattctac
     2221 caaaattttt atcaacagct gtttaaagtc tttgtagcgt ttaaaaaaat atataaatat
     2281 atatatacat aactgttatg tagttcggat agcttagttt taaaagactg atttaaggaa
     2341 caaaaagaaa aagaaaagag agagaagcaa ctttgaagca ccctccagaa ggagttggtt
     2401 ctgtattatt tgtattaaat acgagcttgc gaaccaatca tttccatctt ggtatttaaa
     2461 ccgcgagggc acgatgaatg cagtgccgtt tctttctttc ttttttcctc ccatgtgaaa
     2521 caacttttat tgtgatgtta cttgttattg tttaaatgta cagaaacaaa gggttaaaat
     2581 gtgttaatat acctttttcc atggtgttgt tctttttggg gggaggggac gctactcaac
     2641 atgaatggaa tcaacactgt tggaccagta gtatttatta ctttagaggt tgcttgtccg
     2701 tacctgtccg tccgtccaat tttaaatatt gtttcccttt tttttttgaa actgtataaa
     2761 gtcaaccccc ccaacataag catcttatat acaacaactc atttgtacaa ggtttttaag
     2821 tttatatata aattgtgtat atattttttt gtttcctttt cttgactttt cgtttgtttg
     2881 tttgtttctg tataaaaccc agatgccacc aaatggacat tgatagctgc attaaggatc
     2941 agtagcatta acaaaagttg ctttaaaagc cattacgtaa aacaagactt gaacattagc
     3001 gagagggtcg agcagagcag ccgtgggaac caccccgttt ccccttggac ctcctagtca
     3061 attaccctgt gctcttagaa catggactga ccgtgtgcaa aactttttat gtgccaaaat
     3121 tctcagtgac tttagctttc tccctccttt ttgatgccgt actttctgtt cgccatgttt
     3181 tgctgtgatg ttacatagat agatttgtat gtagttttaa tgtcacctat aacaaaatgt
     3241 gtttggtagc agactgtcca gaaagcattt taaatgaaga ggtctaaacc cttaagggcc
     3301 aaaaattctg tatattagat tactcttaaa atgaaaaaga aaaaaagtaa aaaaaaaaaa
     3361 aaacccagct gccgcttctg tgtacaagta tgacatacga gtaggtagcg aactttaaaa
     3421 acaagagaac ctaggcatgc cgatgttgta aaatgctgta taaagccgag acctgtcttt
     3481 tcagtgccat cgtagttgac atgaagcgat tgtaaaactg tctccggttt tctctggttt
     3541 attaaaatgc taactataac aatttttttt tgtgaatact ttgaatgttt cctaacagtt
     3601 gtggtgttac cgttctgttt gatgcttatt ccaagttcat ttttggatgg tttggaagcc
     3661 attttgtaat gaataaatgt ccatgctgta cagtatctgt agcatgccgt tctggattaa
     3721 taaaagcaac ttagtatgtg cagaaa
//
