LOCUS       XM_017597629            4098 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus transcription factor 7 (Tcf7),
            transcript variant X1, mRNA.
ACCESSION   XM_017597629
VERSION     XM_017597629.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_017597629.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4098
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4098
                     /gene="Tcf7"
                     /note="transcription factor 7; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 33 ESTs, 1 Protein, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     17 samples with support for all annotated introns"
                     /db_xref="GeneID:363595"
                     /db_xref="RGD:1305894"
     CDS             1179..2729
                     /gene="Tcf7"
                     /codon_start=1
                     /product="transcription factor 7 isoform X1"
                     /protein_id="XP_017453118.1"
                     /db_xref="GeneID:363595"
                     /db_xref="RGD:1305894"
                     /translation="MPQLDSGGGGTGAGDDLGAPDELLAFQDEGEEQDDKNRDSAAGP
                     ERDLAELKSSLVNESEGAAAGAGVPSPGVRVHGEAEGAPEALGREHTSQRLFSDKLPE
                     SLEDGLKAPECASGMYKETVYSAFNLLMHYPPASGTGQHPQPQPPLHNKPGQPPHGVP
                     QLSPLYEHFSSPHPTPAPADISQKQGVHRPLQTPDLSGFYSLTSGSMGQLPHTVSWPS
                     PPLYPLSPSCGYRQHFPAPTAAPGAPYPRFTHPSLMLGSGVPGHPAAIPHPAIVPSSG
                     KQELQPYDRNLKTQAEPKAEKEAKKPIIKKPLNAFMLYMKEMRAKVIAECTLKESAAI
                     NQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKRRSREKHQEST
                     TDPGSPKKCRARFGLNQQTDWCGPCRRKKKCIRYLPGEGRCPSPVPSDDSALGCPRSP
                     APQDSPSYLLLPTFPTELLACPVEPAPTFSGRSAALTLPAPKSPKTPHSTLQNAQIQQ
                     QESQRQAA"
ORIGIN      
        1 tggggcccgg agtcggagag gcggccagtg tcctccttca caaattacct actgttgttc
       61 caactgcttt cccaagaggt ggaagaggtc cacattgact ccaacactga aacgtgcttg
      121 gggcggaggt gtgccgcctt agttttctgc aacgctattc aaagggccta gtgtcttaca
      181 gaaacagtga cctgtcggcg tggatacgac tctgggtgct aaggagatgc cagtggatac
      241 gactctgggt gctaaggaga tgccactgaa gagccggcct taactagggt caggtcaatg
      301 ggctccgggt gcaacttccc agacggaaca gctgcctaag gaccccaaga cagaatcccg
      361 tggcccacgt ggccgccgga agtctcagtt cccggacagt aggttctagg cgtcgatctt
      421 agttgggaaa gtcatagcgg gctgcagaac ccacgtgagt ggccatgatc cttcctcgcc
      481 tcgggccacc acatgtcata tatttaaggt gtttgatttg cacatgcaac aggtaggcgc
      541 tcaataaatg cgtgaggcgc gaatgcttgt gcctatgtgg gcaggcggtc tggaaaaagg
      601 tccctagtcg gcacagggat ggtgaaagga gcaggtgtgc gtgtgtgtca gggtccatct
      661 tctagcatcc tccaggttaa gcaaaggacg ctgttcacac caaggttcca agccacccat
      721 aggctctacg ggtctaagga accccgttct ccgcaacttg ggcgcaagtt gtggctgtct
      781 tgtagttaag gaagttgagt tccacagttt agtaatggat ttcaggttag agaatagctc
      841 gaggagagcg agccctttaa gattatgccc agtgagcctg tcctggtctt tagggagagg
      901 agggcggggc ctgagacgtt agtcccaccc accgcggccc cgccccggcg cccgctccgc
      961 ccccggctcg ctgcccgcgg tgcctttgat gttccgaccc gccagctccc aaagcggctg
     1021 tgccccgcgc cctcgccccg cgcccactgg ccgctcaggc ggagtcagcg tgcgctccgc
     1081 ccgccgcgtt ccgggctcgg agctccgcac cctgggctcg ctgcctcccg ggccggctcc
     1141 gcgccccgca cccggcgccc cagcgggcgc agcgcaccat gccgcagctg gactcgggcg
     1201 ggggcggcac gggagcagga gacgacctcg gcgcgccgga cgagctcttg gccttccaag
     1261 acgaaggcga ggaacaggac gataagaatc gcgacagcgc cgcgggcccc gagcgggacc
     1321 tggcggagct caagtcctca ctggtgaatg agtctgaagg cgcggccgca ggcgccgggg
     1381 tcccgagtcc cggcgtccga gtccatggag aagccgaagg agcgcccgag gccctgggac
     1441 gagagcacac ttcgcagaga cttttctcgg acaaacttcc agagtcccta gaggacggcc
     1501 tgaaggcccc ggagtgtgcc agtggcatgt acaaagagac tgtctactct gccttcaatc
     1561 tgctcatgca ctacccaccg gcctcgggaa cggggcagca tccgcagcct cagcccccgc
     1621 tgcataacaa gcccggccag cccccacatg gcgtccccca actttctcca ctctacgaac
     1681 atttcagcag tccacaccct acccctgcac cagcggacat cagccagaag caaggagttc
     1741 acagaccgct gcagacccct gatctctctg gattttattc tctgacctca ggcagcatgg
     1801 gacagctccc ccatactgtg agctggccca gccctcctct ctaccccctg tccccttcct
     1861 gcggatatag acagcacttc cctgccccca ctgcagcccc tggcgccccc tatcccaggt
     1921 tcacccaccc gtccttgatg ctgggatctg gtgtacctgg acacccagca gccatccctc
     1981 acccggccat tgtgccctcc tcagggaagc aggagctgca gccatatgac agaaacctga
     2041 aaacacaggc agaacccaag gcagagaagg aggcgaagaa gccaatcatc aaaaagcccc
     2101 tcaatgcttt catgctttac atgaaggaga tgagagccaa ggtcattgca gagtgcacac
     2161 tcaaggagag cgctgccatc aaccagatcc tgggtcgcag gtggcatgca ttatctcgag
     2221 aagagcaagc caagtactat gagctggccc gcaaggaaag gcagctgcac atgcagttat
     2281 acccaggctg gtcagcacgg gataactacg gaaagaagaa gaggcggtca agggaaaagc
     2341 atcaagaatc caccacagac cctggctcgc ctaagaaatg tcgtgctcgc tttggcctca
     2401 accagcagac ggattggtgt ggtccgtgca ggaggaaaaa gaaatgcatt cggtacttac
     2461 ccggagaagg ccgctgcccc agccccgttc cttccgatga cagtgctcta ggctgtcccc
     2521 ggtccccagc tccccaggac tcaccctcgt accttctgct gcccaccttc cccacagaac
     2581 tgcttgcctg cccagtggaa ccagcaccaa cattctcagg tcgctctgca gctctcactc
     2641 ttccagcccc taagtctcca aagacccccc acagcaccct ccagaatgca caaatacagc
     2701 aacaagaatc tcagagacag gcagcctaac agctttgcgt gctaggcaca gagcacctgg
     2761 cttcccaccc ctaactcaga aggaggcaac aagaccagct cacgtggaac cagatagggg
     2821 ccctcttaag gtggtgaaga tttcaaaggc tatacaactc cctgaaccag gggccatcaa
     2881 ttcaagaggt gggggatcag atctatgtag ctgtatcatc taaaggggat cctgctgcct
     2941 gtgacagcca tatttcttat tgctggctgg acatccctat tgtccctagt aggttttgtt
     3001 ttggctgtag gtcagatggg cagactgacc tcgtcagctg cctactctac aagtgcctct
     3061 ctgccttctg ccataccttc tccatgccag tacttcttgg accaagaata cctggtctgt
     3121 cacacaaaat aactctgtgg ttgaccagcc acacaaacaa tgcttctctc ttaaggaaac
     3181 tgagaagctc tgtttacaaa aaacagctgc tgttcccaag ctgggccaga ggaagtgtct
     3241 tactgtgttc tcaggagttt gcaagaggag ggaataggat actttaggcc tttcaacctt
     3301 ggcaacaaca ctgacctacc tactggtggg cagtagtcag ctttcatttc agtctttcct
     3361 gacaagctca ctagcattag aaactacagg caataagtta aagttggcct aaattcagtg
     3421 tgcacccttc tctaccagcc tcttcccagt tcctttccag ctcagctgag tcagctcctg
     3481 ggcagctgtg agagggcaaa tcccaacagc cagaactcat ccttcagcat ttagaacccg
     3541 ccagcttcag tttctctgtg gggctgaagg tagagatctg ttccaattaa agcaaggagc
     3601 ccataaaacc tctttgtggt ggacatggtt ccttgccaca ttctagaaac tctttgagcc
     3661 aaacttaacc ttgagccttg aaaaacaagt tttgttttaa cttaactttt tttttttttt
     3721 ttgcattttc actgtatata gcctgaatcc aaagaaaagg ggttatccaa gtattccaca
     3781 aaaaaaaaaa aaaaacaaaa aaacaaagcc ctttagttcc tactttagtc gctcacttct
     3841 caatccaaag atcatgtttc tagtgtagtg ttagaagtct tgaagaagtc tgaccaagtg
     3901 tgacagtgta cctataaccc cagcacttgg aagacagagg caggcagacc tctgaattcc
     3961 agggcaacca gggctacata gaccttttct caaaaagaaa aactgttgta ttcaaatatt
     4021 tttgtattgt taatgcatta ccatagaaaa gcttttttaa acaggagaat aaagattctt
     4081 tttacttggt ttttcaaa
//
