LOCUS       XM_039097182            6639 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus transcription factor 4 (Tcf4),
            transcript variant X25, mRNA.
ACCESSION   XM_039097182
VERSION     XM_039097182.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051353.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6639
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6639
                     /gene="Tcf4"
                     /note="transcription factor 4; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 9
                     mRNAs, 87 ESTs, 1 long SRA read, 7 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 10 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:84382"
                     /db_xref="RGD:69271"
     CDS             16..1680
                     /gene="Tcf4"
                     /codon_start=1
                     /product="transcription factor 4 isoform X19"
                     /protein_id="XP_038953110.1"
                     /db_xref="GeneID:84382"
                     /db_xref="RGD:69271"
                     /translation="MGLHGSQQSLLGGDMDMGNPGTLSPTKPGSQYYPYSSNNARRRP
                     LHSSTMEVQTKKVRKVPPGLPSSVYAPSASTADYNRDSPGYSSSKPAASTFSSSFFMQ
                     DGHHSSDPWSSSSGMNQPGYGGMLGNSHIPQSSSYCSLHPHERLSYPSHSSADINSSL
                     PPMSTFHRSGTNHYSTSSCTPPANGTDSIMANRGTGAAGSSQTGDALGKALASIYSPD
                     HTNNSFSSNPSTPVGSPPSLSAGTAVWSRNGGQASSSPNYEGPLHSLQSRIEDRLERL
                     DDAIHVLRNHAVGPSTAVPGGHGDMHGIIGPSHNGAMGSLGSGYGTGLLSANRHSLMV
                     GAHREDGVALRGSHSLLPNQVPVPQLPVQSATSPDLNPPQDPYRGMPPGLQGQSVSSG
                     SSEIKSDDEGDENLQDTKSSEDKKLDDDKKDIKSITRSRSSNNDDEDLTPEQKAEREK
                     ERRMANNARERLRVRDINEAFKELGRMVQLHLKSDKPQTKLLILHQAVAVILSLEQQV
                     RERNLNPKAACLKRREEEKVSSEPPPLSLAGPHPGMGDAANHMGQM"
ORIGIN      
        1 tggtcctttc gaaacatggg tctgcatggt tcccagcaga gtctcctcgg aggggacatg
       61 gatatgggca acccaggaac cctttcgccc accaaacctg gctcccagta ctacccatat
      121 tccagcaata acgcccgacg gaggcctctt cacagtagta ccatggaggt gcagacaaag
      181 aaagtcagaa aagttcctcc aggcttgcca tcttcagtct acgctccttc agccagcact
      241 gccgactaca acagggactc accaggctat tcttcctcca agccagcagc cagcactttc
      301 tccagctcct tcttcatgca agatggccat cacagcagtg acccttggag ctcctccagt
      361 ggaatgaatc agcccggcta tggagggatg ctaggcaact ctcatatccc acagtctagc
      421 agctactgta gcctgcatcc acatgaacgt ctgagctatc catcgcactc ctcggcagac
      481 atcaactcca gtcttcctcc gatgtccacg ttccatcgaa gtggcacaaa ccattacagc
      541 acctcttcct gcacacctcc tgccaacgga acagacagta taatggcaaa cagaggaact
      601 ggggcagcag gcagctccca gactggagac gctctgggga aagccctggc ttcgatctat
      661 tctcctgatc acacgaacaa cagcttctcc tccaaccctt caactcctgt tggctcccct
      721 ccttcactct cagcaggcac agctgtttgg tctcgaaacg gaggacaggc ctcgtcatct
      781 cccaattacg aaggaccctt gcactccttg cagagccgaa ttgaagaccg tttagaaaga
      841 ctggacgacg cgattcatgt tctccggaac cacgcggtgg gcccatccac agctgtgccc
      901 ggtggccatg gggacatgca tgggatcatc ggaccctctc acaatggagc aatgggcagt
      961 ctgggctcag gatatggaac tggccttctc tcagccaaca gacattcact catggtcggg
     1021 gcccaccgtg aagatggcgt ggcactgaga ggcagccatt ctctcctgcc aaaccaggtt
     1081 ccggttccac agcttccagt ccagtctgca acttcccctg acttgaaccc accccaagac
     1141 ccttacagag ggatgccacc aggcctccag ggacagagtg tgtcttccgg cagctctgag
     1201 atcaagtccg acgacgaggg cgatgagaac ctacaggaca caaaatcttc cgaggacaag
     1261 aaactagacg acgacaagaa ggatatcaaa tcaattacta ggtcaagatc tagcaataac
     1321 gatgatgagg acctgacccc ggagcagaag gccgagcgtg agaaggagcg gaggatggcc
     1381 aataacgccc gtgagcgcct gagggtccgt gatatcaacg aggctttcaa ggagctgggc
     1441 cgcatggtac agctccacct gaagagcgac aagccccaga ccaagctcct gattctccac
     1501 caggcagtgg ctgtcatcct cagcctggag cagcaagtgc gagaaaggaa cctgaaccca
     1561 aaagctgcct gtctgaaaag aagggaggaa gagaaggtgt cctcagagcc tcccccgctc
     1621 tccttggctg gcccacaccc tgggatggga gacgcagcga atcacatggg tcagatgtga
     1681 aagggtccaa gttgccacct tgcttcatta aaacaagaga ccacttcctt aacagctgta
     1741 ttatcctaaa cccacataaa cactgctcct taaccccgtt ttttttgtaa tataagacaa
     1801 gtctgagtag ttatgaatcg cagacgcaag aggtttcagc attcccaatt atcaaaaaac
     1861 agaaaaacaa acacaaaaaa aaaatgaatg aaagaaagaa agaaagagaa aatgcaactt
     1921 gagggacgac ttctttaaca tatcactctg aatgtgcgaa gcggtatgta caggctgaga
     1981 cgcagcccag agactgaatg gcaatccttc cacactgtgg agcaatgcat ttgtgcctaa
     2041 acttcttttg gaaaaaaaaa tataattaat ttgtaagtct gaaaaaaaat atttaattta
     2101 aaaaaaattg taaacttgca ataatgaaaa agtgtacttc tgaagaaaaa cgacatgaac
     2161 gtttttgttg gtattcaagt cagctagtgt ttctaattac cggatattga atagaggaag
     2221 cccggctacc ctcataacaa aaccagcaac cgtcctgatg gcaaccgaaa tgatgacatt
     2281 agccattcct tagggtagga gggacagatg gatgttatag acctatgaca aatatatata
     2341 taaatatata tataaatata tattaaaaat ttagtgacta tggtaagctt ttgttcattt
     2401 gtttcagact tttttctcct gtaaaaaaat agtactgatt aactttttta aaagaaagat
     2461 tttactgtaa atatggattt ttttttgtct gatttttgtc ccttccccca gtttgttatc
     2521 gtgacctgta gtgccaactc tgcttccgga ggggcagtgc aggacgaaat gctgaccctg
     2581 atgttgcttc tcattcataa atagtagaaa gttgtttctc cagtcttttg ggaacacagg
     2641 acttaaaagt cacatcatgt gtagaaatta catgcagcat tgcccgggca aggcaaaaag
     2701 agtttgtctg gcttgtggca ctgtgcttgt taccctctcc tgggattttc agaggtacac
     2761 ggttagaatg ctacaatgtt accactgtgc cttccaatgt ttatatcatc ggaaacatga
     2821 cataatcaaa gtggctgtga tttaacaaaa aaaaaaaaag attcaagtgt tacctacctg
     2881 tgtagcggaa gtagtgtgca gtgagacgtt tctgaataca tggtcagatt ttttttggaa
     2941 aaaatacaaa aacaaaaaaa aaaaacaaaa aaatttaaaa aaaaaagtca agttcaaaaa
     3001 ccgtcaaatg agaaaatcgc aaggagtgtg acagctgatt gattttgttg cttttcttga
     3061 tttttttttt tttgtttcca aatgggttta ctaaaaagta catgacttac ctgcctcctc
     3121 cttcgtctga aaacaaaaaa caaaaaaaca atgccaacct atcccacagc attatagcaa
     3181 gccttataag ccctaaagca ttaagttgca ctttggtgag gaggggtagc gcagtattct
     3241 ctctggccag tatgagtgaa gtttatactt aacatttgat agaaacatag atcaaactgt
     3301 ggcacagtaa ctcatcagat agctagcgtt gactctgggc acaattgaac caattcccat
     3361 cctaaatctt tccaacaatt gactttggtg tacagtgcag tgaacacata gaactcctac
     3421 ttaagtattc gtcagcatcc ttttgtctct aactcggttc tgttttgaca gccacacaat
     3481 cttggcatgt attaagtaaa aaaaaaaaaa aaatccctgt tgaagtagtt ttcccaccta
     3541 tcagcactga gtaattgccg taactcaatg gaaatggtct aaacgccccc catctcttgt
     3601 cctgtaccac cagttacaca gtgacaaaac acatctgtaa attttatgca accaatggca
     3661 aacctatcat tattttgaaa ctgtgtatgt aaaagttata tttttacatg tagactcttg
     3721 ttattatgtg ttttaataca ttgtatcagt tttttgtttc cttttttttt taactgtgtg
     3781 gttttaaaaa gtcatttaaa tgaaatagcg agctacaaga atctgaaatt tatgttcatt
     3841 tctgaaaatg taagaacaaa taagatagtt atcacgtggt caccttttac aaacccatcg
     3901 atgttttgac tagctgtgtg tatgtgtgtg tgtgcgcatg tgtgcgtgtg tgtgtatgtg
     3961 tgttgaaaac tgtaaatatg ttcagtagcg ataaaacgac aatgctttga tttgttgaga
     4021 agttcctaaa atgtggaggt ggattgaaaa tgtaggggaa tagcagaaat cagatttcat
     4081 gaagagctct tctcttcggg ggctttcctg tggaatggtc aaacagaggt gctccaagaa
     4141 gggcaaggaa gacagtaact tcccctcctc cctgaacgac ggaaaccatg tgtacgtggt
     4201 ctctcaccat gttaaagatt ttctttccgt gatacattct gcactctttt tgtatagtct
     4261 accaaggcgg gtatccctgg gaacaatatt atgatatagg aagcagtata ctctgatcac
     4321 attcaggaga attgtataga agagaatatg gtgtttactc tttagggaac tggaaattct
     4381 ccctgcattg atgtacatct tcagagcggc ccttttgata cacgttatca taaaggtgct
     4441 gactaaagca gaattaaagt ttttcaaatc tgtaaacaaa gcaaaaaatt aaattacagt
     4501 cattcgattg tttgtttttt tttttttcca attggtgctt ttatattttg ttctcactca
     4561 gacagaaaag gctgcaattt cttgttcacc agctttgatg tattcattac tcggtaatgt
     4621 aatacggcta ttgtcaaatt ccttttggaa ataagcaaaa ggcttcccca aggcctgcag
     4681 cagctgctgg ctactttctg cttggcgcag aaacatgatc tgaccctctc tgtagtaatc
     4741 gagttgtatc tccagtttta aaaagaagga aaaagggaat gtggccgttt taatgtgttt
     4801 ttttttttct tttcttgttg ttattttgta attctcaaac ccaggtaaga tattggtatt
     4861 cctgcactgg atttttgaaa gaaacttagc agaagacagg atcgagatac tatagaagca
     4921 tttcccaagt gttcatacta tactagacat aaatgataac ggcgatgtat aggttcagga
     4981 tcggtttaag agactcagac tttgaaagca acttggaacg gttgatccac ctccacattc
     5041 gagtaattaa taattctgca gaattaggga tctgtccatc taggagttgt tacccatttg
     5101 tcttctgtgt ggctgcgagg aacactaacg cttttacaac tgtcagttca cccagtggta
     5161 caactgattc tgactcagtc ttccgattcc tgttttgtat tttgtttttc cacttttttc
     5221 ctatctcttg attttattgt tgttgttatt gctattgtta ttattattat tcgtgatctt
     5281 tatttcgatg aggggttggg aagtgggagg gagtcgaact gagactaggg gttgagagga
     5341 tttttttggt ttggttttct tttctttttt ttttgttttt tttttttttt gtttgtttgt
     5401 ttcatctttg cgtccaacag gcagaatatg gtctgtgtcc aaaacggaac ttaagtcagg
     5461 aaggaaacca ttcagcgtaa acaagcacaa catgtagtct gtcggctgtc tggaagcaaa
     5521 aataaattaa taaataaata ataaataagt aaaagacaca cacggaggtg aagatgaaat
     5581 gtgatggatt ccgagacaat ggggcaccaa ggcctgtagg cctcctcttg attttgcttt
     5641 ggttatgttt gttttcctta gagatgtttt tttcctcacg ggacttgaag tgactcatct
     5701 ctgtgcagta atggtttcgc catatgctca tttcaagtat tatagacata tgtaatggtg
     5761 aaatatatga actgtggcct ttttcattct tgttatttgt gatgcaatta agtgaagaga
     5821 agaaaaaaaa aagcagagat ttaccatgta tcagtgcctg gctttttgtt ataaagcttc
     5881 gtctgtctag tgctcttttt gctataaaaa tagactgtag tacaccctag taggaaaaaa
     5941 aaaccctaaa tttaaaaata aaaaaatata tttggcttat ttttcgcagg agcaatcctt
     6001 ttataccatg gatattacaa aaaaaaaaat tgtcagattc tgaatatttc ttctttgtag
     6061 atttttggaa tcattataag taaaagtttg ttactttatt ttactattta aaagatgtta
     6121 ttttgccatg tgttactgag atgaaactgt atggtatagc ttcttctgtt cgttttttgt
     6181 ttccggtttt ttgtttgttc gtttttggtt tttttttttt ttgtttgttt gttttgtttt
     6241 gttttttttt cttagttgta ggtcgcagta aggacttttc cttttgtttt tgttttttcg
     6301 ttatgttttg ttttgttttt gcgactgtac acatagctgc agcattaaaa acttttaaaa
     6361 aaatctgtta aaaaaaaaag aaaaaaaagg gaaaacgttt aaaaaaaaaa gataaacagt
     6421 tacaccttgt tttcaacgtg tggctgagtg cctcgatttt ttcatgtttt tggtgtattt
     6481 ctgatttgta gaagtgtcca aacaggttgt gtcctggact tccttcaaga ggcgaacaac
     6541 ccagcttggt ctaggccatg acctgttccc atctgtagtt actcgatgaa gtcatgtaca
     6601 tgaccgttct gtagcaataa atgtgccatt tttataaac
//
