LOCUS       XM_039097179            6939 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus transcription factor 4 (Tcf4),
            transcript variant X22, mRNA.
ACCESSION   XM_039097179
VERSION     XM_039097179.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051353.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6939
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6939
                     /gene="Tcf4"
                     /note="transcription factor 4; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 9
                     mRNAs, 87 ESTs, 1 long SRA read, 7 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 16 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:84382"
                     /db_xref="RGD:69271"
     CDS             202..1980
                     /gene="Tcf4"
                     /codon_start=1
                     /product="transcription factor 4 isoform X16"
                     /protein_id="XP_038953107.1"
                     /db_xref="GeneID:84382"
                     /db_xref="RGD:69271"
                     /translation="MFSPPVSSGKNGPTSLASGHFTGSSKTERGSYSSYGRENVQGCH
                     QQSLLGGDMDMGNPGTLSPTKPGSQYYPYSSNNARRRPLHSSTMEVQTKKVRKVPPGL
                     PSSVYAPSASTADYNRDSPGYSSSKPAASTFSSSFFMQDGHHSSDPWSSSSGMNQPGY
                     GGMLGNSHIPQSSSYCSLHPHERLSYPSHSSADINSSLPPMSTFHRSGTNHYSTSSCT
                     PPANGTDSIMANRGTGAAGSSQTGDALGKALASIYSPDHTNNSFSSNPSTPVGSPPSL
                     SAGTAVWSRNGGQASSSPNYEGPLHSLQSRIEDRLERLDDAIHVLRNHAVGPSTAVPG
                     GHGDMHGIIGPSHNGAMGSLGSGYGTGLLSANRHSLMVGAHREDGVALRGSHSLLPNQ
                     VPVPQLPVQSATSPDLNPPQDPYRGMPPGLQGQSVSSGSSEIKSDDEGDENLQDTKSS
                     EDKKLDDDKKDIKSITRSRSSNNDDEDLTPEQKAEREKERRMANNARERLRVRDINEA
                     FKELGRMVQLHLKSDKPQTKLLILHQAVAVILSLEQQVRERNLNPKAACLKRREEEKV
                     SSEPPPLSLAGPHPGMGDAANHMGQM"
ORIGIN      
        1 gaagagagtt ggtgttaaga gtcagggatc ttggctgtgt gtctgcggat cggcggcggc
       61 ggcggcggcg gcggcgggga agccggagcg ggcgcgggcg ccggccgttg gaggaggtgg
      121 tggtggcgga ggcaggggga tagacatgac cgccgcctgg gcgccggcgc tgcaccggga
      181 gcccctcgtc gcgcgcgggc gatgttttcg cctcctgtaa gcagtgggaa aaatggacca
      241 acttctttgg cgagtggaca ttttacgggc tcaagtaaaa cagaaagggg ttcatactca
      301 tcttatggga gagaaaacgt acagggttgc caccagcaga gtctcctcgg aggggacatg
      361 gatatgggca acccaggaac cctttcgccc accaaacctg gctcccagta ctacccatat
      421 tccagcaata acgcccgacg gaggcctctt cacagtagta ccatggaggt gcagacaaag
      481 aaagtcagaa aagttcctcc aggcttgcca tcttcagtct acgctccttc agccagcact
      541 gccgactaca acagggactc accaggctat tcttcctcca agccagcagc cagcactttc
      601 tccagctcct tcttcatgca agatggccat cacagcagtg acccttggag ctcctccagt
      661 ggaatgaatc agcccggcta tggagggatg ctaggcaact ctcatatccc acagtctagc
      721 agctactgta gcctgcatcc acatgaacgt ctgagctatc catcgcactc ctcggcagac
      781 atcaactcca gtcttcctcc gatgtccacg ttccatcgaa gtggcacaaa ccattacagc
      841 acctcttcct gcacacctcc tgccaacgga acagacagta taatggcaaa cagaggaact
      901 ggggcagcag gcagctccca gactggagac gctctgggga aagccctggc ttcgatctat
      961 tctcctgatc acacgaacaa cagcttctcc tccaaccctt caactcctgt tggctcccct
     1021 ccttcactct cagcaggcac agctgtttgg tctcgaaacg gaggacaggc ctcgtcatct
     1081 cccaattacg aaggaccctt gcactccttg cagagccgaa ttgaagaccg tttagaaaga
     1141 ctggacgacg cgattcatgt tctccggaac cacgcggtgg gcccatccac agctgtgccc
     1201 ggtggccatg gggacatgca tgggatcatc ggaccctctc acaatggagc aatgggcagt
     1261 ctgggctcag gatatggaac tggccttctc tcagccaaca gacattcact catggtcggg
     1321 gcccaccgtg aagatggcgt ggcactgaga ggcagccatt ctctcctgcc aaaccaggtt
     1381 ccggttccac agcttccagt ccagtctgca acttcccctg acttgaaccc accccaagac
     1441 ccttacagag ggatgccacc aggcctccag ggacagagtg tgtcttccgg cagctctgag
     1501 atcaagtccg acgacgaggg cgatgagaac ctacaggaca caaaatcttc cgaggacaag
     1561 aaactagacg acgacaagaa ggatatcaaa tcaattacta ggtcaagatc tagcaataac
     1621 gatgatgagg acctgacccc ggagcagaag gccgagcgtg agaaggagcg gaggatggcc
     1681 aataacgccc gtgagcgcct gagggtccgt gatatcaacg aggctttcaa ggagctgggc
     1741 cgcatggtac agctccacct gaagagcgac aagccccaga ccaagctcct gattctccac
     1801 caggcagtgg ctgtcatcct cagcctggag cagcaagtgc gagaaaggaa cctgaaccca
     1861 aaagctgcct gtctgaaaag aagggaggaa gagaaggtgt cctcagagcc tcccccgctc
     1921 tccttggctg gcccacaccc tgggatggga gacgcagcga atcacatggg tcagatgtga
     1981 aagggtccaa gttgccacct tgcttcatta aaacaagaga ccacttcctt aacagctgta
     2041 ttatcctaaa cccacataaa cactgctcct taaccccgtt ttttttgtaa tataagacaa
     2101 gtctgagtag ttatgaatcg cagacgcaag aggtttcagc attcccaatt atcaaaaaac
     2161 agaaaaacaa acacaaaaaa aaaatgaatg aaagaaagaa agaaagagaa aatgcaactt
     2221 gagggacgac ttctttaaca tatcactctg aatgtgcgaa gcggtatgta caggctgaga
     2281 cgcagcccag agactgaatg gcaatccttc cacactgtgg agcaatgcat ttgtgcctaa
     2341 acttcttttg gaaaaaaaaa tataattaat ttgtaagtct gaaaaaaaat atttaattta
     2401 aaaaaaattg taaacttgca ataatgaaaa agtgtacttc tgaagaaaaa cgacatgaac
     2461 gtttttgttg gtattcaagt cagctagtgt ttctaattac cggatattga atagaggaag
     2521 cccggctacc ctcataacaa aaccagcaac cgtcctgatg gcaaccgaaa tgatgacatt
     2581 agccattcct tagggtagga gggacagatg gatgttatag acctatgaca aatatatata
     2641 taaatatata tataaatata tattaaaaat ttagtgacta tggtaagctt ttgttcattt
     2701 gtttcagact tttttctcct gtaaaaaaat agtactgatt aactttttta aaagaaagat
     2761 tttactgtaa atatggattt ttttttgtct gatttttgtc ccttccccca gtttgttatc
     2821 gtgacctgta gtgccaactc tgcttccgga ggggcagtgc aggacgaaat gctgaccctg
     2881 atgttgcttc tcattcataa atagtagaaa gttgtttctc cagtcttttg ggaacacagg
     2941 acttaaaagt cacatcatgt gtagaaatta catgcagcat tgcccgggca aggcaaaaag
     3001 agtttgtctg gcttgtggca ctgtgcttgt taccctctcc tgggattttc agaggtacac
     3061 ggttagaatg ctacaatgtt accactgtgc cttccaatgt ttatatcatc ggaaacatga
     3121 cataatcaaa gtggctgtga tttaacaaaa aaaaaaaaag attcaagtgt tacctacctg
     3181 tgtagcggaa gtagtgtgca gtgagacgtt tctgaataca tggtcagatt ttttttggaa
     3241 aaaatacaaa aacaaaaaaa aaaaacaaaa aaatttaaaa aaaaaagtca agttcaaaaa
     3301 ccgtcaaatg agaaaatcgc aaggagtgtg acagctgatt gattttgttg cttttcttga
     3361 tttttttttt tttgtttcca aatgggttta ctaaaaagta catgacttac ctgcctcctc
     3421 cttcgtctga aaacaaaaaa caaaaaaaca atgccaacct atcccacagc attatagcaa
     3481 gccttataag ccctaaagca ttaagttgca ctttggtgag gaggggtagc gcagtattct
     3541 ctctggccag tatgagtgaa gtttatactt aacatttgat agaaacatag atcaaactgt
     3601 ggcacagtaa ctcatcagat agctagcgtt gactctgggc acaattgaac caattcccat
     3661 cctaaatctt tccaacaatt gactttggtg tacagtgcag tgaacacata gaactcctac
     3721 ttaagtattc gtcagcatcc ttttgtctct aactcggttc tgttttgaca gccacacaat
     3781 cttggcatgt attaagtaaa aaaaaaaaaa aaatccctgt tgaagtagtt ttcccaccta
     3841 tcagcactga gtaattgccg taactcaatg gaaatggtct aaacgccccc catctcttgt
     3901 cctgtaccac cagttacaca gtgacaaaac acatctgtaa attttatgca accaatggca
     3961 aacctatcat tattttgaaa ctgtgtatgt aaaagttata tttttacatg tagactcttg
     4021 ttattatgtg ttttaataca ttgtatcagt tttttgtttc cttttttttt taactgtgtg
     4081 gttttaaaaa gtcatttaaa tgaaatagcg agctacaaga atctgaaatt tatgttcatt
     4141 tctgaaaatg taagaacaaa taagatagtt atcacgtggt caccttttac aaacccatcg
     4201 atgttttgac tagctgtgtg tatgtgtgtg tgtgcgcatg tgtgcgtgtg tgtgtatgtg
     4261 tgttgaaaac tgtaaatatg ttcagtagcg ataaaacgac aatgctttga tttgttgaga
     4321 agttcctaaa atgtggaggt ggattgaaaa tgtaggggaa tagcagaaat cagatttcat
     4381 gaagagctct tctcttcggg ggctttcctg tggaatggtc aaacagaggt gctccaagaa
     4441 gggcaaggaa gacagtaact tcccctcctc cctgaacgac ggaaaccatg tgtacgtggt
     4501 ctctcaccat gttaaagatt ttctttccgt gatacattct gcactctttt tgtatagtct
     4561 accaaggcgg gtatccctgg gaacaatatt atgatatagg aagcagtata ctctgatcac
     4621 attcaggaga attgtataga agagaatatg gtgtttactc tttagggaac tggaaattct
     4681 ccctgcattg atgtacatct tcagagcggc ccttttgata cacgttatca taaaggtgct
     4741 gactaaagca gaattaaagt ttttcaaatc tgtaaacaaa gcaaaaaatt aaattacagt
     4801 cattcgattg tttgtttttt tttttttcca attggtgctt ttatattttg ttctcactca
     4861 gacagaaaag gctgcaattt cttgttcacc agctttgatg tattcattac tcggtaatgt
     4921 aatacggcta ttgtcaaatt ccttttggaa ataagcaaaa ggcttcccca aggcctgcag
     4981 cagctgctgg ctactttctg cttggcgcag aaacatgatc tgaccctctc tgtagtaatc
     5041 gagttgtatc tccagtttta aaaagaagga aaaagggaat gtggccgttt taatgtgttt
     5101 ttttttttct tttcttgttg ttattttgta attctcaaac ccaggtaaga tattggtatt
     5161 cctgcactgg atttttgaaa gaaacttagc agaagacagg atcgagatac tatagaagca
     5221 tttcccaagt gttcatacta tactagacat aaatgataac ggcgatgtat aggttcagga
     5281 tcggtttaag agactcagac tttgaaagca acttggaacg gttgatccac ctccacattc
     5341 gagtaattaa taattctgca gaattaggga tctgtccatc taggagttgt tacccatttg
     5401 tcttctgtgt ggctgcgagg aacactaacg cttttacaac tgtcagttca cccagtggta
     5461 caactgattc tgactcagtc ttccgattcc tgttttgtat tttgtttttc cacttttttc
     5521 ctatctcttg attttattgt tgttgttatt gctattgtta ttattattat tcgtgatctt
     5581 tatttcgatg aggggttggg aagtgggagg gagtcgaact gagactaggg gttgagagga
     5641 tttttttggt ttggttttct tttctttttt ttttgttttt tttttttttt gtttgtttgt
     5701 ttcatctttg cgtccaacag gcagaatatg gtctgtgtcc aaaacggaac ttaagtcagg
     5761 aaggaaacca ttcagcgtaa acaagcacaa catgtagtct gtcggctgtc tggaagcaaa
     5821 aataaattaa taaataaata ataaataagt aaaagacaca cacggaggtg aagatgaaat
     5881 gtgatggatt ccgagacaat ggggcaccaa ggcctgtagg cctcctcttg attttgcttt
     5941 ggttatgttt gttttcctta gagatgtttt tttcctcacg ggacttgaag tgactcatct
     6001 ctgtgcagta atggtttcgc catatgctca tttcaagtat tatagacata tgtaatggtg
     6061 aaatatatga actgtggcct ttttcattct tgttatttgt gatgcaatta agtgaagaga
     6121 agaaaaaaaa aagcagagat ttaccatgta tcagtgcctg gctttttgtt ataaagcttc
     6181 gtctgtctag tgctcttttt gctataaaaa tagactgtag tacaccctag taggaaaaaa
     6241 aaaccctaaa tttaaaaata aaaaaatata tttggcttat ttttcgcagg agcaatcctt
     6301 ttataccatg gatattacaa aaaaaaaaat tgtcagattc tgaatatttc ttctttgtag
     6361 atttttggaa tcattataag taaaagtttg ttactttatt ttactattta aaagatgtta
     6421 ttttgccatg tgttactgag atgaaactgt atggtatagc ttcttctgtt cgttttttgt
     6481 ttccggtttt ttgtttgttc gtttttggtt tttttttttt ttgtttgttt gttttgtttt
     6541 gttttttttt cttagttgta ggtcgcagta aggacttttc cttttgtttt tgttttttcg
     6601 ttatgttttg ttttgttttt gcgactgtac acatagctgc agcattaaaa acttttaaaa
     6661 aaatctgtta aaaaaaaaag aaaaaaaagg gaaaacgttt aaaaaaaaaa gataaacagt
     6721 tacaccttgt tttcaacgtg tggctgagtg cctcgatttt ttcatgtttt tggtgtattt
     6781 ctgatttgta gaagtgtcca aacaggttgt gtcctggact tccttcaaga ggcgaacaac
     6841 ccagcttggt ctaggccatg acctgttccc atctgtagtt actcgatgaa gtcatgtaca
     6901 tgaccgttct gtagcaataa atgtgccatt tttataaac
//
