LOCUS       XM_039097178            7244 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus transcription factor 4 (Tcf4),
            transcript variant X21, mRNA.
ACCESSION   XM_039097178
VERSION     XM_039097178.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051353.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7244
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7244
                     /gene="Tcf4"
                     /note="transcription factor 4; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 9
                     mRNAs, 88 ESTs, 1 long SRA read, 7 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 16 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:84382"
                     /db_xref="RGD:69271"
     CDS             507..2285
                     /gene="Tcf4"
                     /codon_start=1
                     /product="transcription factor 4 isoform X16"
                     /protein_id="XP_038953106.1"
                     /db_xref="GeneID:84382"
                     /db_xref="RGD:69271"
                     /translation="MFSPPVSSGKNGPTSLASGHFTGSSKTERGSYSSYGRENVQGCH
                     QQSLLGGDMDMGNPGTLSPTKPGSQYYPYSSNNARRRPLHSSTMEVQTKKVRKVPPGL
                     PSSVYAPSASTADYNRDSPGYSSSKPAASTFSSSFFMQDGHHSSDPWSSSSGMNQPGY
                     GGMLGNSHIPQSSSYCSLHPHERLSYPSHSSADINSSLPPMSTFHRSGTNHYSTSSCT
                     PPANGTDSIMANRGTGAAGSSQTGDALGKALASIYSPDHTNNSFSSNPSTPVGSPPSL
                     SAGTAVWSRNGGQASSSPNYEGPLHSLQSRIEDRLERLDDAIHVLRNHAVGPSTAVPG
                     GHGDMHGIIGPSHNGAMGSLGSGYGTGLLSANRHSLMVGAHREDGVALRGSHSLLPNQ
                     VPVPQLPVQSATSPDLNPPQDPYRGMPPGLQGQSVSSGSSEIKSDDEGDENLQDTKSS
                     EDKKLDDDKKDIKSITRSRSSNNDDEDLTPEQKAEREKERRMANNARERLRVRDINEA
                     FKELGRMVQLHLKSDKPQTKLLILHQAVAVILSLEQQVRERNLNPKAACLKRREEEKV
                     SSEPPPLSLAGPHPGMGDAANHMGQM"
ORIGIN      
        1 ttctctttat aagccgcagt gcccggatgt gaatggatta caatgtatct ttcagggaaa
       61 cctattatta tcaatgtgac tcctcggggg agtcaatgat ggtgttgagg atgatgatga
      121 tgatgagacg cctctaaact tggaacaagt ttaggacttt gaaagagaag aaaaaaatac
      181 aaccaacaag accgaagaac aattataact atcctgtgtt gattattttt tataaacaat
      241 aagaaaaagt tgtcggattt ttttttatga ttactttttt gggggagggg attttgtttc
      301 agttttatga tggaaaatgc aaaaaccaga gccaagtgca taatcttgta atctgtggct
      361 aaccctggaa caggactgac tactatttaa aatactcttt tgggggaata cacatgtgag
      421 atactaagta cttgcagaag atttttgtct ctctttttaa agtctctttc cttggaatat
      481 tgtgagcata tttgtggcca ttgaagatgt tttcgcctcc tgtaagcagt gggaaaaatg
      541 gaccaacttc tttggcgagt ggacatttta cgggctcaag taaaacagaa aggggttcat
      601 actcatctta tgggagagaa aacgtacagg gttgccacca gcagagtctc ctcggagggg
      661 acatggatat gggcaaccca ggaacccttt cgcccaccaa acctggctcc cagtactacc
      721 catattccag caataacgcc cgacggaggc ctcttcacag tagtaccatg gaggtgcaga
      781 caaagaaagt cagaaaagtt cctccaggct tgccatcttc agtctacgct ccttcagcca
      841 gcactgccga ctacaacagg gactcaccag gctattcttc ctccaagcca gcagccagca
      901 ctttctccag ctccttcttc atgcaagatg gccatcacag cagtgaccct tggagctcct
      961 ccagtggaat gaatcagccc ggctatggag ggatgctagg caactctcat atcccacagt
     1021 ctagcagcta ctgtagcctg catccacatg aacgtctgag ctatccatcg cactcctcgg
     1081 cagacatcaa ctccagtctt cctccgatgt ccacgttcca tcgaagtggc acaaaccatt
     1141 acagcacctc ttcctgcaca cctcctgcca acggaacaga cagtataatg gcaaacagag
     1201 gaactggggc agcaggcagc tcccagactg gagacgctct ggggaaagcc ctggcttcga
     1261 tctattctcc tgatcacacg aacaacagct tctcctccaa cccttcaact cctgttggct
     1321 cccctccttc actctcagca ggcacagctg tttggtctcg aaacggagga caggcctcgt
     1381 catctcccaa ttacgaagga cccttgcact ccttgcagag ccgaattgaa gaccgtttag
     1441 aaagactgga cgacgcgatt catgttctcc ggaaccacgc ggtgggccca tccacagctg
     1501 tgcccggtgg ccatggggac atgcatggga tcatcggacc ctctcacaat ggagcaatgg
     1561 gcagtctggg ctcaggatat ggaactggcc ttctctcagc caacagacat tcactcatgg
     1621 tcggggccca ccgtgaagat ggcgtggcac tgagaggcag ccattctctc ctgccaaacc
     1681 aggttccggt tccacagctt ccagtccagt ctgcaacttc ccctgacttg aacccacccc
     1741 aagaccctta cagagggatg ccaccaggcc tccagggaca gagtgtgtct tccggcagct
     1801 ctgagatcaa gtccgacgac gagggcgatg agaacctaca ggacacaaaa tcttccgagg
     1861 acaagaaact agacgacgac aagaaggata tcaaatcaat tactaggtca agatctagca
     1921 ataacgatga tgaggacctg accccggagc agaaggccga gcgtgagaag gagcggagga
     1981 tggccaataa cgcccgtgag cgcctgaggg tccgtgatat caacgaggct ttcaaggagc
     2041 tgggccgcat ggtacagctc cacctgaaga gcgacaagcc ccagaccaag ctcctgattc
     2101 tccaccaggc agtggctgtc atcctcagcc tggagcagca agtgcgagaa aggaacctga
     2161 acccaaaagc tgcctgtctg aaaagaaggg aggaagagaa ggtgtcctca gagcctcccc
     2221 cgctctcctt ggctggccca caccctggga tgggagacgc agcgaatcac atgggtcaga
     2281 tgtgaaaggg tccaagttgc caccttgctt cattaaaaca agagaccact tccttaacag
     2341 ctgtattatc ctaaacccac ataaacactg ctccttaacc ccgttttttt tgtaatataa
     2401 gacaagtctg agtagttatg aatcgcagac gcaagaggtt tcagcattcc caattatcaa
     2461 aaaacagaaa aacaaacaca aaaaaaaaat gaatgaaaga aagaaagaaa gagaaaatgc
     2521 aacttgaggg acgacttctt taacatatca ctctgaatgt gcgaagcggt atgtacaggc
     2581 tgagacgcag cccagagact gaatggcaat ccttccacac tgtggagcaa tgcatttgtg
     2641 cctaaacttc ttttggaaaa aaaaatataa ttaatttgta agtctgaaaa aaaatattta
     2701 atttaaaaaa aattgtaaac ttgcaataat gaaaaagtgt acttctgaag aaaaacgaca
     2761 tgaacgtttt tgttggtatt caagtcagct agtgtttcta attaccggat attgaataga
     2821 ggaagcccgg ctaccctcat aacaaaacca gcaaccgtcc tgatggcaac cgaaatgatg
     2881 acattagcca ttccttaggg taggagggac agatggatgt tatagaccta tgacaaatat
     2941 atatataaat atatatataa atatatatta aaaatttagt gactatggta agcttttgtt
     3001 catttgtttc agactttttt ctcctgtaaa aaaatagtac tgattaactt ttttaaaaga
     3061 aagattttac tgtaaatatg gatttttttt tgtctgattt ttgtcccttc ccccagtttg
     3121 ttatcgtgac ctgtagtgcc aactctgctt ccggaggggc agtgcaggac gaaatgctga
     3181 ccctgatgtt gcttctcatt cataaatagt agaaagttgt ttctccagtc ttttgggaac
     3241 acaggactta aaagtcacat catgtgtaga aattacatgc agcattgccc gggcaaggca
     3301 aaaagagttt gtctggcttg tggcactgtg cttgttaccc tctcctggga ttttcagagg
     3361 tacacggtta gaatgctaca atgttaccac tgtgccttcc aatgtttata tcatcggaaa
     3421 catgacataa tcaaagtggc tgtgatttaa caaaaaaaaa aaaagattca agtgttacct
     3481 acctgtgtag cggaagtagt gtgcagtgag acgtttctga atacatggtc agattttttt
     3541 tggaaaaaat acaaaaacaa aaaaaaaaaa caaaaaaatt taaaaaaaaa agtcaagttc
     3601 aaaaaccgtc aaatgagaaa atcgcaagga gtgtgacagc tgattgattt tgttgctttt
     3661 cttgattttt ttttttttgt ttccaaatgg gtttactaaa aagtacatga cttacctgcc
     3721 tcctccttcg tctgaaaaca aaaaacaaaa aaacaatgcc aacctatccc acagcattat
     3781 agcaagcctt ataagcccta aagcattaag ttgcactttg gtgaggaggg gtagcgcagt
     3841 attctctctg gccagtatga gtgaagttta tacttaacat ttgatagaaa catagatcaa
     3901 actgtggcac agtaactcat cagatagcta gcgttgactc tgggcacaat tgaaccaatt
     3961 cccatcctaa atctttccaa caattgactt tggtgtacag tgcagtgaac acatagaact
     4021 cctacttaag tattcgtcag catccttttg tctctaactc ggttctgttt tgacagccac
     4081 acaatcttgg catgtattaa gtaaaaaaaa aaaaaaaatc cctgttgaag tagttttccc
     4141 acctatcagc actgagtaat tgccgtaact caatggaaat ggtctaaacg ccccccatct
     4201 cttgtcctgt accaccagtt acacagtgac aaaacacatc tgtaaatttt atgcaaccaa
     4261 tggcaaacct atcattattt tgaaactgtg tatgtaaaag ttatattttt acatgtagac
     4321 tcttgttatt atgtgtttta atacattgta tcagtttttt gtttcctttt ttttttaact
     4381 gtgtggtttt aaaaagtcat ttaaatgaaa tagcgagcta caagaatctg aaatttatgt
     4441 tcatttctga aaatgtaaga acaaataaga tagttatcac gtggtcacct tttacaaacc
     4501 catcgatgtt ttgactagct gtgtgtatgt gtgtgtgtgc gcatgtgtgc gtgtgtgtgt
     4561 atgtgtgttg aaaactgtaa atatgttcag tagcgataaa acgacaatgc tttgatttgt
     4621 tgagaagttc ctaaaatgtg gaggtggatt gaaaatgtag gggaatagca gaaatcagat
     4681 ttcatgaaga gctcttctct tcgggggctt tcctgtggaa tggtcaaaca gaggtgctcc
     4741 aagaagggca aggaagacag taacttcccc tcctccctga acgacggaaa ccatgtgtac
     4801 gtggtctctc accatgttaa agattttctt tccgtgatac attctgcact ctttttgtat
     4861 agtctaccaa ggcgggtatc cctgggaaca atattatgat ataggaagca gtatactctg
     4921 atcacattca ggagaattgt atagaagaga atatggtgtt tactctttag ggaactggaa
     4981 attctccctg cattgatgta catcttcaga gcggcccttt tgatacacgt tatcataaag
     5041 gtgctgacta aagcagaatt aaagtttttc aaatctgtaa acaaagcaaa aaattaaatt
     5101 acagtcattc gattgtttgt tttttttttt ttccaattgg tgcttttata ttttgttctc
     5161 actcagacag aaaaggctgc aatttcttgt tcaccagctt tgatgtattc attactcggt
     5221 aatgtaatac ggctattgtc aaattccttt tggaaataag caaaaggctt ccccaaggcc
     5281 tgcagcagct gctggctact ttctgcttgg cgcagaaaca tgatctgacc ctctctgtag
     5341 taatcgagtt gtatctccag ttttaaaaag aaggaaaaag ggaatgtggc cgttttaatg
     5401 tgtttttttt tttcttttct tgttgttatt ttgtaattct caaacccagg taagatattg
     5461 gtattcctgc actggatttt tgaaagaaac ttagcagaag acaggatcga gatactatag
     5521 aagcatttcc caagtgttca tactatacta gacataaatg ataacggcga tgtataggtt
     5581 caggatcggt ttaagagact cagactttga aagcaacttg gaacggttga tccacctcca
     5641 cattcgagta attaataatt ctgcagaatt agggatctgt ccatctagga gttgttaccc
     5701 atttgtcttc tgtgtggctg cgaggaacac taacgctttt acaactgtca gttcacccag
     5761 tggtacaact gattctgact cagtcttccg attcctgttt tgtattttgt ttttccactt
     5821 ttttcctatc tcttgatttt attgttgttg ttattgctat tgttattatt attattcgtg
     5881 atctttattt cgatgagggg ttgggaagtg ggagggagtc gaactgagac taggggttga
     5941 gaggattttt ttggtttggt tttcttttct tttttttttg tttttttttt tttttgtttg
     6001 tttgtttcat ctttgcgtcc aacaggcaga atatggtctg tgtccaaaac ggaacttaag
     6061 tcaggaagga aaccattcag cgtaaacaag cacaacatgt agtctgtcgg ctgtctggaa
     6121 gcaaaaataa attaataaat aaataataaa taagtaaaag acacacacgg aggtgaagat
     6181 gaaatgtgat ggattccgag acaatggggc accaaggcct gtaggcctcc tcttgatttt
     6241 gctttggtta tgtttgtttt ccttagagat gtttttttcc tcacgggact tgaagtgact
     6301 catctctgtg cagtaatggt ttcgccatat gctcatttca agtattatag acatatgtaa
     6361 tggtgaaata tatgaactgt ggcctttttc attcttgtta tttgtgatgc aattaagtga
     6421 agagaagaaa aaaaaaagca gagatttacc atgtatcagt gcctggcttt ttgttataaa
     6481 gcttcgtctg tctagtgctc tttttgctat aaaaatagac tgtagtacac cctagtagga
     6541 aaaaaaaacc ctaaatttaa aaataaaaaa atatatttgg cttatttttc gcaggagcaa
     6601 tccttttata ccatggatat tacaaaaaaa aaaattgtca gattctgaat atttcttctt
     6661 tgtagatttt tggaatcatt ataagtaaaa gtttgttact ttattttact atttaaaaga
     6721 tgttattttg ccatgtgtta ctgagatgaa actgtatggt atagcttctt ctgttcgttt
     6781 tttgtttccg gttttttgtt tgttcgtttt tggttttttt tttttttgtt tgtttgtttt
     6841 gttttgtttt tttttcttag ttgtaggtcg cagtaaggac ttttcctttt gtttttgttt
     6901 tttcgttatg ttttgttttg tttttgcgac tgtacacata gctgcagcat taaaaacttt
     6961 taaaaaaatc tgttaaaaaa aaaagaaaaa aaagggaaaa cgtttaaaaa aaaaagataa
     7021 acagttacac cttgttttca acgtgtggct gagtgcctcg attttttcat gtttttggtg
     7081 tatttctgat ttgtagaagt gtccaaacag gttgtgtcct ggacttcctt caagaggcga
     7141 acaacccagc ttggtctagg ccatgacctg ttcccatctg tagttactcg atgaagtcat
     7201 gtacatgacc gttctgtagc aataaatgtg ccatttttat aaac
//
