LOCUS       XM_039097176            6759 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus transcription factor 4 (Tcf4),
            transcript variant X19, mRNA.
ACCESSION   XM_039097176
VERSION     XM_039097176.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051353.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039097176.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6759
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6759
                     /gene="Tcf4"
                     /note="transcription factor 4; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 7
                     mRNAs, 85 ESTs, 1 long SRA read, 6 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 31 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:84382"
                     /db_xref="RGD:69271"
     CDS             16..1800
                     /gene="Tcf4"
                     /codon_start=1
                     /product="transcription factor 4 isoform X14"
                     /protein_id="XP_038953104.1"
                     /db_xref="GeneID:84382"
                     /db_xref="RGD:69271"
                     /translation="MKDIFFQFLVARVRKRHSLSCLHTLPVVSPLRKTERGSYSSYGR
                     ENVQGCHQSLLGGDMDMGNPGTLSPTKPGSQYYPYSSNNARRRPLHSSTMEVQTKKVR
                     KVPPGLPSSVYAPSASTADYNRDSPGYSSSKPAASTFSSSFFMQDGHHSSDPWSSSSG
                     MNQPGYGGMLGNSHIPQSSSYCSLHPHERLSYPSHSSADINSSLPPMSTFHRSGTNHY
                     STSSCTPPANGTDSIMANRGTGAAGSSQTGDALGKALASIYSPDHTNNSFSSNPSTPV
                     GSPPSLSAGTAVWSRNGGQASSSPNYEGPLHSLQSRIEDRLERLDDAIHVLRNHAVGP
                     STAVPGGHGDMHGIIGPSHNGAMGSLGSGYGTGLLSANRHSLMVGAHREDGVALRGSH
                     SLLPNQVPVPQLPVQSATSPDLNPPQDPYRGMPPGLQGQSVSSGSSEIKSDDEGDENL
                     QDTKSSEDKKLDDDKKDIKSITSNNDDEDLTPEQKAEREKERRMANNARERLRVRDIN
                     EAFKELGRMVQLHLKSDKPQTKLLILHQAVAVILSLEQQVRERNLNPKAACLKRREEE
                     KVSSEPPPLSLAGPHPGMGDAANHMGQM"
ORIGIN      
        1 tggctaagaa taggaatgaa agatattttt ttccagttcc ttgtcgccag agtgaggaag
       61 cgccattccc tgtcttgctt gcatacattg ccagttgtgt ctcctctacg taaaacagaa
      121 aggggttcat actcatctta tgggagagaa aacgtacagg gttgccacca gagtctcctc
      181 ggaggggaca tggatatggg caacccagga accctttcgc ccaccaaacc tggctcccag
      241 tactacccat attccagcaa taacgcccga cggaggcctc ttcacagtag taccatggag
      301 gtgcagacaa agaaagtcag aaaagttcct ccaggcttgc catcttcagt ctacgctcct
      361 tcagccagca ctgccgacta caacagggac tcaccaggct attcttcctc caagccagca
      421 gccagcactt tctccagctc cttcttcatg caagatggcc atcacagcag tgacccttgg
      481 agctcctcca gtggaatgaa tcagcccggc tatggaggga tgctaggcaa ctctcatatc
      541 ccacagtcta gcagctactg tagcctgcat ccacatgaac gtctgagcta tccatcgcac
      601 tcctcggcag acatcaactc cagtcttcct ccgatgtcca cgttccatcg aagtggcaca
      661 aaccattaca gcacctcttc ctgcacacct cctgccaacg gaacagacag tataatggca
      721 aacagaggaa ctggggcagc aggcagctcc cagactggag acgctctggg gaaagccctg
      781 gcttcgatct attctcctga tcacacgaac aacagcttct cctccaaccc ttcaactcct
      841 gttggctccc ctccttcact ctcagcaggc acagctgttt ggtctcgaaa cggaggacag
      901 gcctcgtcat ctcccaatta cgaaggaccc ttgcactcct tgcagagccg aattgaagac
      961 cgtttagaaa gactggacga cgcgattcat gttctccgga accacgcggt gggcccatcc
     1021 acagctgtgc ccggtggcca tggggacatg catgggatca tcggaccctc tcacaatgga
     1081 gcaatgggca gtctgggctc aggatatgga actggccttc tctcagccaa cagacattca
     1141 ctcatggtcg gggcccaccg tgaagatggc gtggcactga gaggcagcca ttctctcctg
     1201 ccaaaccagg ttccggttcc acagcttcca gtccagtctg caacttcccc tgacttgaac
     1261 ccaccccaag acccttacag agggatgcca ccaggcctcc agggacagag tgtgtcttcc
     1321 ggcagctctg agatcaagtc cgacgacgag ggcgatgaga acctacagga cacaaaatct
     1381 tccgaggaca agaaactaga cgacgacaag aaggatatca aatcaattac tagcaataac
     1441 gatgatgagg acctgacccc ggagcagaag gccgagcgtg agaaggagcg gaggatggcc
     1501 aataacgccc gtgagcgcct gagggtccgt gatatcaacg aggctttcaa ggagctgggc
     1561 cgcatggtac agctccacct gaagagcgac aagccccaga ccaagctcct gattctccac
     1621 caggcagtgg ctgtcatcct cagcctggag cagcaagtgc gagaaaggaa cctgaaccca
     1681 aaagctgcct gtctgaaaag aagggaggaa gagaaggtgt cctcagagcc tcccccgctc
     1741 tccttggctg gcccacaccc tgggatggga gacgcagcga atcacatggg tcagatgtga
     1801 aagggtccaa gttgccacct tgcttcatta aaacaagaga ccacttcctt aacagctgta
     1861 ttatcctaaa cccacataaa cactgctcct taaccccgtt ttttttgtaa tataagacaa
     1921 gtctgagtag ttatgaatcg cagacgcaag aggtttcagc attcccaatt atcaaaaaac
     1981 agaaaaacaa acacaaaaaa aaaatgaatg aaagaaagaa agaaagagaa aatgcaactt
     2041 gagggacgac ttctttaaca tatcactctg aatgtgcgaa gcggtatgta caggctgaga
     2101 cgcagcccag agactgaatg gcaatccttc cacactgtgg agcaatgcat ttgtgcctaa
     2161 acttcttttg gaaaaaaaaa tataattaat ttgtaagtct gaaaaaaaat atttaattta
     2221 aaaaaaattg taaacttgca ataatgaaaa agtgtacttc tgaagaaaaa cgacatgaac
     2281 gtttttgttg gtattcaagt cagctagtgt ttctaattac cggatattga atagaggaag
     2341 cccggctacc ctcataacaa aaccagcaac cgtcctgatg gcaaccgaaa tgatgacatt
     2401 agccattcct tagggtagga gggacagatg gatgttatag acctatgaca aatatatata
     2461 taaatatata tataaatata tattaaaaat ttagtgacta tggtaagctt ttgttcattt
     2521 gtttcagact tttttctcct gtaaaaaaat agtactgatt aactttttta aaagaaagat
     2581 tttactgtaa atatggattt ttttttgtct gatttttgtc ccttccccca gtttgttatc
     2641 gtgacctgta gtgccaactc tgcttccgga ggggcagtgc aggacgaaat gctgaccctg
     2701 atgttgcttc tcattcataa atagtagaaa gttgtttctc cagtcttttg ggaacacagg
     2761 acttaaaagt cacatcatgt gtagaaatta catgcagcat tgcccgggca aggcaaaaag
     2821 agtttgtctg gcttgtggca ctgtgcttgt taccctctcc tgggattttc agaggtacac
     2881 ggttagaatg ctacaatgtt accactgtgc cttccaatgt ttatatcatc ggaaacatga
     2941 cataatcaaa gtggctgtga tttaacaaaa aaaaaaaaag attcaagtgt tacctacctg
     3001 tgtagcggaa gtagtgtgca gtgagacgtt tctgaataca tggtcagatt ttttttggaa
     3061 aaaatacaaa aacaaaaaaa aaaaacaaaa aaatttaaaa aaaaaagtca agttcaaaaa
     3121 ccgtcaaatg agaaaatcgc aaggagtgtg acagctgatt gattttgttg cttttcttga
     3181 tttttttttt tttgtttcca aatgggttta ctaaaaagta catgacttac ctgcctcctc
     3241 cttcgtctga aaacaaaaaa caaaaaaaca atgccaacct atcccacagc attatagcaa
     3301 gccttataag ccctaaagca ttaagttgca ctttggtgag gaggggtagc gcagtattct
     3361 ctctggccag tatgagtgaa gtttatactt aacatttgat agaaacatag atcaaactgt
     3421 ggcacagtaa ctcatcagat agctagcgtt gactctgggc acaattgaac caattcccat
     3481 cctaaatctt tccaacaatt gactttggtg tacagtgcag tgaacacata gaactcctac
     3541 ttaagtattc gtcagcatcc ttttgtctct aactcggttc tgttttgaca gccacacaat
     3601 cttggcatgt attaagtaaa aaaaaaaaaa aaatccctgt tgaagtagtt ttcccaccta
     3661 tcagcactga gtaattgccg taactcaatg gaaatggtct aaacgccccc catctcttgt
     3721 cctgtaccac cagttacaca gtgacaaaac acatctgtaa attttatgca accaatggca
     3781 aacctatcat tattttgaaa ctgtgtatgt aaaagttata tttttacatg tagactcttg
     3841 ttattatgtg ttttaataca ttgtatcagt tttttgtttc cttttttttt taactgtgtg
     3901 gttttaaaaa gtcatttaaa tgaaatagcg agctacaaga atctgaaatt tatgttcatt
     3961 tctgaaaatg taagaacaaa taagatagtt atcacgtggt caccttttac aaacccatcg
     4021 atgttttgac tagctgtgtg tatgtgtgtg tgtgcgcatg tgtgcgtgtg tgtgtatgtg
     4081 tgttgaaaac tgtaaatatg ttcagtagcg ataaaacgac aatgctttga tttgttgaga
     4141 agttcctaaa atgtggaggt ggattgaaaa tgtaggggaa tagcagaaat cagatttcat
     4201 gaagagctct tctcttcggg ggctttcctg tggaatggtc aaacagaggt gctccaagaa
     4261 gggcaaggaa gacagtaact tcccctcctc cctgaacgac ggaaaccatg tgtacgtggt
     4321 ctctcaccat gttaaagatt ttctttccgt gatacattct gcactctttt tgtatagtct
     4381 accaaggcgg gtatccctgg gaacaatatt atgatatagg aagcagtata ctctgatcac
     4441 attcaggaga attgtataga agagaatatg gtgtttactc tttagggaac tggaaattct
     4501 ccctgcattg atgtacatct tcagagcggc ccttttgata cacgttatca taaaggtgct
     4561 gactaaagca gaattaaagt ttttcaaatc tgtaaacaaa gcaaaaaatt aaattacagt
     4621 cattcgattg tttgtttttt tttttttcca attggtgctt ttatattttg ttctcactca
     4681 gacagaaaag gctgcaattt cttgttcacc agctttgatg tattcattac tcggtaatgt
     4741 aatacggcta ttgtcaaatt ccttttggaa ataagcaaaa ggcttcccca aggcctgcag
     4801 cagctgctgg ctactttctg cttggcgcag aaacatgatc tgaccctctc tgtagtaatc
     4861 gagttgtatc tccagtttta aaaagaagga aaaagggaat gtggccgttt taatgtgttt
     4921 ttttttttct tttcttgttg ttattttgta attctcaaac ccaggtaaga tattggtatt
     4981 cctgcactgg atttttgaaa gaaacttagc agaagacagg atcgagatac tatagaagca
     5041 tttcccaagt gttcatacta tactagacat aaatgataac ggcgatgtat aggttcagga
     5101 tcggtttaag agactcagac tttgaaagca acttggaacg gttgatccac ctccacattc
     5161 gagtaattaa taattctgca gaattaggga tctgtccatc taggagttgt tacccatttg
     5221 tcttctgtgt ggctgcgagg aacactaacg cttttacaac tgtcagttca cccagtggta
     5281 caactgattc tgactcagtc ttccgattcc tgttttgtat tttgtttttc cacttttttc
     5341 ctatctcttg attttattgt tgttgttatt gctattgtta ttattattat tcgtgatctt
     5401 tatttcgatg aggggttggg aagtgggagg gagtcgaact gagactaggg gttgagagga
     5461 tttttttggt ttggttttct tttctttttt ttttgttttt tttttttttt gtttgtttgt
     5521 ttcatctttg cgtccaacag gcagaatatg gtctgtgtcc aaaacggaac ttaagtcagg
     5581 aaggaaacca ttcagcgtaa acaagcacaa catgtagtct gtcggctgtc tggaagcaaa
     5641 aataaattaa taaataaata ataaataagt aaaagacaca cacggaggtg aagatgaaat
     5701 gtgatggatt ccgagacaat ggggcaccaa ggcctgtagg cctcctcttg attttgcttt
     5761 ggttatgttt gttttcctta gagatgtttt tttcctcacg ggacttgaag tgactcatct
     5821 ctgtgcagta atggtttcgc catatgctca tttcaagtat tatagacata tgtaatggtg
     5881 aaatatatga actgtggcct ttttcattct tgttatttgt gatgcaatta agtgaagaga
     5941 agaaaaaaaa aagcagagat ttaccatgta tcagtgcctg gctttttgtt ataaagcttc
     6001 gtctgtctag tgctcttttt gctataaaaa tagactgtag tacaccctag taggaaaaaa
     6061 aaaccctaaa tttaaaaata aaaaaatata tttggcttat ttttcgcagg agcaatcctt
     6121 ttataccatg gatattacaa aaaaaaaaat tgtcagattc tgaatatttc ttctttgtag
     6181 atttttggaa tcattataag taaaagtttg ttactttatt ttactattta aaagatgtta
     6241 ttttgccatg tgttactgag atgaaactgt atggtatagc ttcttctgtt cgttttttgt
     6301 ttccggtttt ttgtttgttc gtttttggtt tttttttttt ttgtttgttt gttttgtttt
     6361 gttttttttt cttagttgta ggtcgcagta aggacttttc cttttgtttt tgttttttcg
     6421 ttatgttttg ttttgttttt gcgactgtac acatagctgc agcattaaaa acttttaaaa
     6481 aaatctgtta aaaaaaaaag aaaaaaaagg gaaaacgttt aaaaaaaaaa gataaacagt
     6541 tacaccttgt tttcaacgtg tggctgagtg cctcgatttt ttcatgtttt tggtgtattt
     6601 ctgatttgta gaagtgtcca aacaggttgt gtcctggact tccttcaaga ggcgaacaac
     6661 ccagcttggt ctaggccatg acctgttccc atctgtagtt actcgatgaa gtcatgtaca
     6721 tgaccgttct gtagcaataa atgtgccatt tttataaac
//
