LOCUS       XM_039097166            7140 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus transcription factor 4 (Tcf4),
            transcript variant X10, mRNA.
ACCESSION   XM_039097166
VERSION     XM_039097166.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051353.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7140
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7140
                     /gene="Tcf4"
                     /note="transcription factor 4; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 7
                     mRNAs, 86 ESTs, 1 long SRA read, 16 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 182 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:84382"
                     /db_xref="RGD:69271"
     CDS             184..2181
                     /gene="Tcf4"
                     /codon_start=1
                     /product="transcription factor 4 isoform X6"
                     /protein_id="XP_038953094.1"
                     /db_xref="GeneID:84382"
                     /db_xref="RGD:69271"
                     /translation="MHHQQRMAALGTDKELSDLLDFSAMFSPPVSSGKNGPTSLASGH
                     FTGSNVEDRSSSGSWGNGGHPSPSRNYGDGTPYDHMTSRDLGSHDNLSPPFVNSRIQS
                     KTERGSYSSYGRENVQGCHQQSLLGGDMDMGNPGTLSPTKPGSQYYPYSSNNARRRPL
                     HSSTMEVQTKKVRKVPPGLPSSVYAPSASTADYNRDSPGYSSSKPAASTFSSSFFMQD
                     GHHSSDPWSSSSGMNQPGYGGMLGNSHIPQSSSYCSLHPHERLSYPSHSSADINSSLP
                     PMSTFHRSGTNHYSTSSCTPPANGTDSIMANRGTGAAGSSQTGDALGKALASIYSPDH
                     TNNSFSSNPSTPVGSPPSLSAGTAVWSRNGGQASSSPNYEGPLHSLQSRIEDRLERLD
                     DAIHVLRNHAVGPSTAVPGGHGDMHGIIGPSHNGAMGSLGSGYGTGLLSANRHSLMVG
                     AHREDGVALRGSHSLLPNQVPVPQLPVQSATSPDLNPPQDPYRGMPPGLQGQSVSSGS
                     SEIKSDDEGDENLQDTKSSEDKKLDDDKKDIKSITSNNDDEDLTPEQKAEREKERRMA
                     NNARERLRVRDINEAFKELGRMVQLHLKSDKPQTKLLILHQAVAVILSLEQQVRERNL
                     NPKAACLKRREEEKVSSEPPPLSLAGPHPGMGDAANHMGQM"
ORIGIN      
        1 cagagacaga cagagagaca gacagaagtg agaggggatg taaactcgaa tcaatttcaa
       61 agtgcctccg gtggatgaac ccggcaaatc ctcaactgtt caggcttcag attgtaactg
      121 gcgatctgag ggggaaaatg aggtgctggg tgaattttcc ttggtttgtg tgattttgct
      181 aaaatgcatc accaacagcg aatggctgcc ttagggacgg acaaagagct gagtgattta
      241 ctggatttca gtgcgatgtt ttcgcctcct gtaagcagtg ggaaaaatgg accaacttct
      301 ttggcgagtg gacattttac gggctcaaat gtagaagaca gaagtagctc agggtcctgg
      361 gggaatggag gtcatccaag cccgtccagg aactatggag atgggactcc ctatgaccac
      421 atgactagca gggatcttgg gtcacatgac aatctctctc caccttttgt caattccaga
      481 atacaaagta aaacagaaag gggttcatac tcatcttatg ggagagaaaa cgtacagggt
      541 tgccaccagc agagtctcct cggaggggac atggatatgg gcaacccagg aaccctttcg
      601 cccaccaaac ctggctccca gtactaccca tattccagca ataacgcccg acggaggcct
      661 cttcacagta gtaccatgga ggtgcagaca aagaaagtca gaaaagttcc tccaggcttg
      721 ccatcttcag tctacgctcc ttcagccagc actgccgact acaacaggga ctcaccaggc
      781 tattcttcct ccaagccagc agccagcact ttctccagct ccttcttcat gcaagatggc
      841 catcacagca gtgacccttg gagctcctcc agtggaatga atcagcccgg ctatggaggg
      901 atgctaggca actctcatat cccacagtct agcagctact gtagcctgca tccacatgaa
      961 cgtctgagct atccatcgca ctcctcggca gacatcaact ccagtcttcc tccgatgtcc
     1021 acgttccatc gaagtggcac aaaccattac agcacctctt cctgcacacc tcctgccaac
     1081 ggaacagaca gtataatggc aaacagagga actggggcag caggcagctc ccagactgga
     1141 gacgctctgg ggaaagccct ggcttcgatc tattctcctg atcacacgaa caacagcttc
     1201 tcctccaacc cttcaactcc tgttggctcc cctccttcac tctcagcagg cacagctgtt
     1261 tggtctcgaa acggaggaca ggcctcgtca tctcccaatt acgaaggacc cttgcactcc
     1321 ttgcagagcc gaattgaaga ccgtttagaa agactggacg acgcgattca tgttctccgg
     1381 aaccacgcgg tgggcccatc cacagctgtg cccggtggcc atggggacat gcatgggatc
     1441 atcggaccct ctcacaatgg agcaatgggc agtctgggct caggatatgg aactggcctt
     1501 ctctcagcca acagacattc actcatggtc ggggcccacc gtgaagatgg cgtggcactg
     1561 agaggcagcc attctctcct gccaaaccag gttccggttc cacagcttcc agtccagtct
     1621 gcaacttccc ctgacttgaa cccaccccaa gacccttaca gagggatgcc accaggcctc
     1681 cagggacaga gtgtgtcttc cggcagctct gagatcaagt ccgacgacga gggcgatgag
     1741 aacctacagg acacaaaatc ttccgaggac aagaaactag acgacgacaa gaaggatatc
     1801 aaatcaatta ctagcaataa cgatgatgag gacctgaccc cggagcagaa ggccgagcgt
     1861 gagaaggagc ggaggatggc caataacgcc cgtgagcgcc tgagggtccg tgatatcaac
     1921 gaggctttca aggagctggg ccgcatggta cagctccacc tgaagagcga caagccccag
     1981 accaagctcc tgattctcca ccaggcagtg gctgtcatcc tcagcctgga gcagcaagtg
     2041 cgagaaagga acctgaaccc aaaagctgcc tgtctgaaaa gaagggagga agagaaggtg
     2101 tcctcagagc ctcccccgct ctccttggct ggcccacacc ctgggatggg agacgcagcg
     2161 aatcacatgg gtcagatgtg aaagggtcca agttgccacc ttgcttcatt aaaacaagag
     2221 accacttcct taacagctgt attatcctaa acccacataa acactgctcc ttaaccccgt
     2281 tttttttgta atataagaca agtctgagta gttatgaatc gcagacgcaa gaggtttcag
     2341 cattcccaat tatcaaaaaa cagaaaaaca aacacaaaaa aaaaatgaat gaaagaaaga
     2401 aagaaagaga aaatgcaact tgagggacga cttctttaac atatcactct gaatgtgcga
     2461 agcggtatgt acaggctgag acgcagccca gagactgaat ggcaatcctt ccacactgtg
     2521 gagcaatgca tttgtgccta aacttctttt ggaaaaaaaa atataattaa tttgtaagtc
     2581 tgaaaaaaaa tatttaattt aaaaaaaatt gtaaacttgc aataatgaaa aagtgtactt
     2641 ctgaagaaaa acgacatgaa cgtttttgtt ggtattcaag tcagctagtg tttctaatta
     2701 ccggatattg aatagaggaa gcccggctac cctcataaca aaaccagcaa ccgtcctgat
     2761 ggcaaccgaa atgatgacat tagccattcc ttagggtagg agggacagat ggatgttata
     2821 gacctatgac aaatatatat ataaatatat atataaatat atattaaaaa tttagtgact
     2881 atggtaagct tttgttcatt tgtttcagac ttttttctcc tgtaaaaaaa tagtactgat
     2941 taactttttt aaaagaaaga ttttactgta aatatggatt tttttttgtc tgatttttgt
     3001 cccttccccc agtttgttat cgtgacctgt agtgccaact ctgcttccgg aggggcagtg
     3061 caggacgaaa tgctgaccct gatgttgctt ctcattcata aatagtagaa agttgtttct
     3121 ccagtctttt gggaacacag gacttaaaag tcacatcatg tgtagaaatt acatgcagca
     3181 ttgcccgggc aaggcaaaaa gagtttgtct ggcttgtggc actgtgcttg ttaccctctc
     3241 ctgggatttt cagaggtaca cggttagaat gctacaatgt taccactgtg ccttccaatg
     3301 tttatatcat cggaaacatg acataatcaa agtggctgtg atttaacaaa aaaaaaaaaa
     3361 gattcaagtg ttacctacct gtgtagcgga agtagtgtgc agtgagacgt ttctgaatac
     3421 atggtcagat tttttttgga aaaaatacaa aaacaaaaaa aaaaaacaaa aaaatttaaa
     3481 aaaaaaagtc aagttcaaaa accgtcaaat gagaaaatcg caaggagtgt gacagctgat
     3541 tgattttgtt gcttttcttg attttttttt ttttgtttcc aaatgggttt actaaaaagt
     3601 acatgactta cctgcctcct ccttcgtctg aaaacaaaaa acaaaaaaac aatgccaacc
     3661 tatcccacag cattatagca agccttataa gccctaaagc attaagttgc actttggtga
     3721 ggaggggtag cgcagtattc tctctggcca gtatgagtga agtttatact taacatttga
     3781 tagaaacata gatcaaactg tggcacagta actcatcaga tagctagcgt tgactctggg
     3841 cacaattgaa ccaattccca tcctaaatct ttccaacaat tgactttggt gtacagtgca
     3901 gtgaacacat agaactccta cttaagtatt cgtcagcatc cttttgtctc taactcggtt
     3961 ctgttttgac agccacacaa tcttggcatg tattaagtaa aaaaaaaaaa aaaatccctg
     4021 ttgaagtagt tttcccacct atcagcactg agtaattgcc gtaactcaat ggaaatggtc
     4081 taaacgcccc ccatctcttg tcctgtacca ccagttacac agtgacaaaa cacatctgta
     4141 aattttatgc aaccaatggc aaacctatca ttattttgaa actgtgtatg taaaagttat
     4201 atttttacat gtagactctt gttattatgt gttttaatac attgtatcag ttttttgttt
     4261 cctttttttt ttaactgtgt ggttttaaaa agtcatttaa atgaaatagc gagctacaag
     4321 aatctgaaat ttatgttcat ttctgaaaat gtaagaacaa ataagatagt tatcacgtgg
     4381 tcacctttta caaacccatc gatgttttga ctagctgtgt gtatgtgtgt gtgtgcgcat
     4441 gtgtgcgtgt gtgtgtatgt gtgttgaaaa ctgtaaatat gttcagtagc gataaaacga
     4501 caatgctttg atttgttgag aagttcctaa aatgtggagg tggattgaaa atgtagggga
     4561 atagcagaaa tcagatttca tgaagagctc ttctcttcgg gggctttcct gtggaatggt
     4621 caaacagagg tgctccaaga agggcaagga agacagtaac ttcccctcct ccctgaacga
     4681 cggaaaccat gtgtacgtgg tctctcacca tgttaaagat tttctttccg tgatacattc
     4741 tgcactcttt ttgtatagtc taccaaggcg ggtatccctg ggaacaatat tatgatatag
     4801 gaagcagtat actctgatca cattcaggag aattgtatag aagagaatat ggtgtttact
     4861 ctttagggaa ctggaaattc tccctgcatt gatgtacatc ttcagagcgg cccttttgat
     4921 acacgttatc ataaaggtgc tgactaaagc agaattaaag tttttcaaat ctgtaaacaa
     4981 agcaaaaaat taaattacag tcattcgatt gtttgttttt ttttttttcc aattggtgct
     5041 tttatatttt gttctcactc agacagaaaa ggctgcaatt tcttgttcac cagctttgat
     5101 gtattcatta ctcggtaatg taatacggct attgtcaaat tccttttgga aataagcaaa
     5161 aggcttcccc aaggcctgca gcagctgctg gctactttct gcttggcgca gaaacatgat
     5221 ctgaccctct ctgtagtaat cgagttgtat ctccagtttt aaaaagaagg aaaaagggaa
     5281 tgtggccgtt ttaatgtgtt tttttttttc ttttcttgtt gttattttgt aattctcaaa
     5341 cccaggtaag atattggtat tcctgcactg gatttttgaa agaaacttag cagaagacag
     5401 gatcgagata ctatagaagc atttcccaag tgttcatact atactagaca taaatgataa
     5461 cggcgatgta taggttcagg atcggtttaa gagactcaga ctttgaaagc aacttggaac
     5521 ggttgatcca cctccacatt cgagtaatta ataattctgc agaattaggg atctgtccat
     5581 ctaggagttg ttacccattt gtcttctgtg tggctgcgag gaacactaac gcttttacaa
     5641 ctgtcagttc acccagtggt acaactgatt ctgactcagt cttccgattc ctgttttgta
     5701 ttttgttttt ccactttttt cctatctctt gattttattg ttgttgttat tgctattgtt
     5761 attattatta ttcgtgatct ttatttcgat gaggggttgg gaagtgggag ggagtcgaac
     5821 tgagactagg ggttgagagg atttttttgg tttggttttc ttttcttttt tttttgtttt
     5881 tttttttttt tgtttgtttg tttcatcttt gcgtccaaca ggcagaatat ggtctgtgtc
     5941 caaaacggaa cttaagtcag gaaggaaacc attcagcgta aacaagcaca acatgtagtc
     6001 tgtcggctgt ctggaagcaa aaataaatta ataaataaat aataaataag taaaagacac
     6061 acacggaggt gaagatgaaa tgtgatggat tccgagacaa tggggcacca aggcctgtag
     6121 gcctcctctt gattttgctt tggttatgtt tgttttcctt agagatgttt ttttcctcac
     6181 gggacttgaa gtgactcatc tctgtgcagt aatggtttcg ccatatgctc atttcaagta
     6241 ttatagacat atgtaatggt gaaatatatg aactgtggcc tttttcattc ttgttatttg
     6301 tgatgcaatt aagtgaagag aagaaaaaaa aaagcagaga tttaccatgt atcagtgcct
     6361 ggctttttgt tataaagctt cgtctgtcta gtgctctttt tgctataaaa atagactgta
     6421 gtacacccta gtaggaaaaa aaaaccctaa atttaaaaat aaaaaaatat atttggctta
     6481 tttttcgcag gagcaatcct tttataccat ggatattaca aaaaaaaaaa ttgtcagatt
     6541 ctgaatattt cttctttgta gatttttgga atcattataa gtaaaagttt gttactttat
     6601 tttactattt aaaagatgtt attttgccat gtgttactga gatgaaactg tatggtatag
     6661 cttcttctgt tcgttttttg tttccggttt tttgtttgtt cgtttttggt tttttttttt
     6721 tttgtttgtt tgttttgttt tgtttttttt tcttagttgt aggtcgcagt aaggactttt
     6781 ccttttgttt ttgttttttc gttatgtttt gttttgtttt tgcgactgta cacatagctg
     6841 cagcattaaa aacttttaaa aaaatctgtt aaaaaaaaaa gaaaaaaaag ggaaaacgtt
     6901 taaaaaaaaa agataaacag ttacaccttg ttttcaacgt gtggctgagt gcctcgattt
     6961 tttcatgttt ttggtgtatt tctgatttgt agaagtgtcc aaacaggttg tgtcctggac
     7021 ttccttcaag aggcgaacaa cccagcttgg tctaggccat gacctgttcc catctgtagt
     7081 tactcgatga agtcatgtac atgaccgttc tgtagcaata aatgtgccat ttttataaac
//
