LOCUS       XM_039097158            7191 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus transcription factor 4 (Tcf4),
            transcript variant X2, mRNA.
ACCESSION   XM_039097158
VERSION     XM_039097158.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051353.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039097158.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7191
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7191
                     /gene="Tcf4"
                     /note="transcription factor 4; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 9
                     mRNAs, 88 ESTs, 1 long SRA read, 17 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 198 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:84382"
                     /db_xref="RGD:69271"
     CDS             223..2232
                     /gene="Tcf4"
                     /codon_start=1
                     /product="transcription factor 4 isoform X1"
                     /protein_id="XP_038953086.1"
                     /db_xref="GeneID:84382"
                     /db_xref="RGD:69271"
                     /translation="MHHQQRMAALGTDKELSDLLDFSAMFSPPVSSGKNGPTSLASGH
                     FTGSNVEDRSSSGSWGNGGHPSPSRNYGDGTPYDHMTSRDLGSHDNLSPPFVNSRIQS
                     KTERGSYSSYGRENVQGCHQQSLLGGDMDMGNPGTLSPTKPGSQYYPYSSNNARRRPL
                     HSSTMEVQTKKVRKVPPGLPSSVYAPSASTADYNRDSPGYSSSKPAASTFSSSFFMQD
                     GHHSSDPWSSSSGMNQPGYGGMLGNSHIPQSSSYCSLHPHERLSYPSHSSADINSSLP
                     PMSTFHRSGTNHYSTSSCTPPANGTDSIMANRGTGAAGSSQTGDALGKALASIYSPDH
                     TNNSFSSNPSTPVGSPPSLSAGTAVWSRNGGQASSSPNYEGPLHSLQSRIEDRLERLD
                     DAIHVLRNHAVGPSTAVPGGHGDMHGIIGPSHNGAMGSLGSGYGTGLLSANRHSLMVG
                     AHREDGVALRGSHSLLPNQVPVPQLPVQSATSPDLNPPQDPYRGMPPGLQGQSVSSGS
                     SEIKSDDEGDENLQDTKSSEDKKLDDDKKDIKSITRSRSSNNDDEDLTPEQKAEREKE
                     RRMANNARERLRVRDINEAFKELGRMVQLHLKSDKPQTKLLILHQAVAVILSLEQQVR
                     ERNLNPKAACLKRREEEKVSSEPPPLSLAGPHPGMGDAANHMGQM"
ORIGIN      
        1 agaagagagt tggtgttaag agtcagggat cttggctgtg tgtctgcgga tcggcggcgg
       61 cggcggcggc ggcggcgggg aagccggagc gggcgcgggc gccggccgtt ggaggaggtg
      121 gtggtggcgg aggcaggggg atagacatga ccgccgcctg ggcgccggcg ctgcaccggg
      181 agcccctcgt cgcgcgcggg cggtttgtgt gattttgcta aaatgcatca ccaacagcga
      241 atggctgcct tagggacgga caaagagctg agtgatttac tggatttcag tgcgatgttt
      301 tcgcctcctg taagcagtgg gaaaaatgga ccaacttctt tggcgagtgg acattttacg
      361 ggctcaaatg tagaagacag aagtagctca gggtcctggg ggaatggagg tcatccaagc
      421 ccgtccagga actatggaga tgggactccc tatgaccaca tgactagcag ggatcttggg
      481 tcacatgaca atctctctcc accttttgtc aattccagaa tacaaagtaa aacagaaagg
      541 ggttcatact catcttatgg gagagaaaac gtacagggtt gccaccagca gagtctcctc
      601 ggaggggaca tggatatggg caacccagga accctttcgc ccaccaaacc tggctcccag
      661 tactacccat attccagcaa taacgcccga cggaggcctc ttcacagtag taccatggag
      721 gtgcagacaa agaaagtcag aaaagttcct ccaggcttgc catcttcagt ctacgctcct
      781 tcagccagca ctgccgacta caacagggac tcaccaggct attcttcctc caagccagca
      841 gccagcactt tctccagctc cttcttcatg caagatggcc atcacagcag tgacccttgg
      901 agctcctcca gtggaatgaa tcagcccggc tatggaggga tgctaggcaa ctctcatatc
      961 ccacagtcta gcagctactg tagcctgcat ccacatgaac gtctgagcta tccatcgcac
     1021 tcctcggcag acatcaactc cagtcttcct ccgatgtcca cgttccatcg aagtggcaca
     1081 aaccattaca gcacctcttc ctgcacacct cctgccaacg gaacagacag tataatggca
     1141 aacagaggaa ctggggcagc aggcagctcc cagactggag acgctctggg gaaagccctg
     1201 gcttcgatct attctcctga tcacacgaac aacagcttct cctccaaccc ttcaactcct
     1261 gttggctccc ctccttcact ctcagcaggc acagctgttt ggtctcgaaa cggaggacag
     1321 gcctcgtcat ctcccaatta cgaaggaccc ttgcactcct tgcagagccg aattgaagac
     1381 cgtttagaaa gactggacga cgcgattcat gttctccgga accacgcggt gggcccatcc
     1441 acagctgtgc ccggtggcca tggggacatg catgggatca tcggaccctc tcacaatgga
     1501 gcaatgggca gtctgggctc aggatatgga actggccttc tctcagccaa cagacattca
     1561 ctcatggtcg gggcccaccg tgaagatggc gtggcactga gaggcagcca ttctctcctg
     1621 ccaaaccagg ttccggttcc acagcttcca gtccagtctg caacttcccc tgacttgaac
     1681 ccaccccaag acccttacag agggatgcca ccaggcctcc agggacagag tgtgtcttcc
     1741 ggcagctctg agatcaagtc cgacgacgag ggcgatgaga acctacagga cacaaaatct
     1801 tccgaggaca agaaactaga cgacgacaag aaggatatca aatcaattac taggtcaaga
     1861 tctagcaata acgatgatga ggacctgacc ccggagcaga aggccgagcg tgagaaggag
     1921 cggaggatgg ccaataacgc ccgtgagcgc ctgagggtcc gtgatatcaa cgaggctttc
     1981 aaggagctgg gccgcatggt acagctccac ctgaagagcg acaagcccca gaccaagctc
     2041 ctgattctcc accaggcagt ggctgtcatc ctcagcctgg agcagcaagt gcgagaaagg
     2101 aacctgaacc caaaagctgc ctgtctgaaa agaagggagg aagagaaggt gtcctcagag
     2161 cctcccccgc tctccttggc tggcccacac cctgggatgg gagacgcagc gaatcacatg
     2221 ggtcagatgt gaaagggtcc aagttgccac cttgcttcat taaaacaaga gaccacttcc
     2281 ttaacagctg tattatccta aacccacata aacactgctc cttaaccccg ttttttttgt
     2341 aatataagac aagtctgagt agttatgaat cgcagacgca agaggtttca gcattcccaa
     2401 ttatcaaaaa acagaaaaac aaacacaaaa aaaaaatgaa tgaaagaaag aaagaaagag
     2461 aaaatgcaac ttgagggacg acttctttaa catatcactc tgaatgtgcg aagcggtatg
     2521 tacaggctga gacgcagccc agagactgaa tggcaatcct tccacactgt ggagcaatgc
     2581 atttgtgcct aaacttcttt tggaaaaaaa aatataatta atttgtaagt ctgaaaaaaa
     2641 atatttaatt taaaaaaaat tgtaaacttg caataatgaa aaagtgtact tctgaagaaa
     2701 aacgacatga acgtttttgt tggtattcaa gtcagctagt gtttctaatt accggatatt
     2761 gaatagagga agcccggcta ccctcataac aaaaccagca accgtcctga tggcaaccga
     2821 aatgatgaca ttagccattc cttagggtag gagggacaga tggatgttat agacctatga
     2881 caaatatata tataaatata tatataaata tatattaaaa atttagtgac tatggtaagc
     2941 ttttgttcat ttgtttcaga cttttttctc ctgtaaaaaa atagtactga ttaacttttt
     3001 taaaagaaag attttactgt aaatatggat ttttttttgt ctgatttttg tcccttcccc
     3061 cagtttgtta tcgtgacctg tagtgccaac tctgcttccg gaggggcagt gcaggacgaa
     3121 atgctgaccc tgatgttgct tctcattcat aaatagtaga aagttgtttc tccagtcttt
     3181 tgggaacaca ggacttaaaa gtcacatcat gtgtagaaat tacatgcagc attgcccggg
     3241 caaggcaaaa agagtttgtc tggcttgtgg cactgtgctt gttaccctct cctgggattt
     3301 tcagaggtac acggttagaa tgctacaatg ttaccactgt gccttccaat gtttatatca
     3361 tcggaaacat gacataatca aagtggctgt gatttaacaa aaaaaaaaaa agattcaagt
     3421 gttacctacc tgtgtagcgg aagtagtgtg cagtgagacg tttctgaata catggtcaga
     3481 ttttttttgg aaaaaataca aaaacaaaaa aaaaaaacaa aaaaatttaa aaaaaaaagt
     3541 caagttcaaa aaccgtcaaa tgagaaaatc gcaaggagtg tgacagctga ttgattttgt
     3601 tgcttttctt gatttttttt tttttgtttc caaatgggtt tactaaaaag tacatgactt
     3661 acctgcctcc tccttcgtct gaaaacaaaa aacaaaaaaa caatgccaac ctatcccaca
     3721 gcattatagc aagccttata agccctaaag cattaagttg cactttggtg aggaggggta
     3781 gcgcagtatt ctctctggcc agtatgagtg aagtttatac ttaacatttg atagaaacat
     3841 agatcaaact gtggcacagt aactcatcag atagctagcg ttgactctgg gcacaattga
     3901 accaattccc atcctaaatc tttccaacaa ttgactttgg tgtacagtgc agtgaacaca
     3961 tagaactcct acttaagtat tcgtcagcat ccttttgtct ctaactcggt tctgttttga
     4021 cagccacaca atcttggcat gtattaagta aaaaaaaaaa aaaaatccct gttgaagtag
     4081 ttttcccacc tatcagcact gagtaattgc cgtaactcaa tggaaatggt ctaaacgccc
     4141 cccatctctt gtcctgtacc accagttaca cagtgacaaa acacatctgt aaattttatg
     4201 caaccaatgg caaacctatc attattttga aactgtgtat gtaaaagtta tatttttaca
     4261 tgtagactct tgttattatg tgttttaata cattgtatca gttttttgtt tccttttttt
     4321 tttaactgtg tggttttaaa aagtcattta aatgaaatag cgagctacaa gaatctgaaa
     4381 tttatgttca tttctgaaaa tgtaagaaca aataagatag ttatcacgtg gtcacctttt
     4441 acaaacccat cgatgttttg actagctgtg tgtatgtgtg tgtgtgcgca tgtgtgcgtg
     4501 tgtgtgtatg tgtgttgaaa actgtaaata tgttcagtag cgataaaacg acaatgcttt
     4561 gatttgttga gaagttccta aaatgtggag gtggattgaa aatgtagggg aatagcagaa
     4621 atcagatttc atgaagagct cttctcttcg ggggctttcc tgtggaatgg tcaaacagag
     4681 gtgctccaag aagggcaagg aagacagtaa cttcccctcc tccctgaacg acggaaacca
     4741 tgtgtacgtg gtctctcacc atgttaaaga ttttctttcc gtgatacatt ctgcactctt
     4801 tttgtatagt ctaccaaggc gggtatccct gggaacaata ttatgatata ggaagcagta
     4861 tactctgatc acattcagga gaattgtata gaagagaata tggtgtttac tctttaggga
     4921 actggaaatt ctccctgcat tgatgtacat cttcagagcg gcccttttga tacacgttat
     4981 cataaaggtg ctgactaaag cagaattaaa gtttttcaaa tctgtaaaca aagcaaaaaa
     5041 ttaaattaca gtcattcgat tgtttgtttt tttttttttc caattggtgc ttttatattt
     5101 tgttctcact cagacagaaa aggctgcaat ttcttgttca ccagctttga tgtattcatt
     5161 actcggtaat gtaatacggc tattgtcaaa ttccttttgg aaataagcaa aaggcttccc
     5221 caaggcctgc agcagctgct ggctactttc tgcttggcgc agaaacatga tctgaccctc
     5281 tctgtagtaa tcgagttgta tctccagttt taaaaagaag gaaaaaggga atgtggccgt
     5341 tttaatgtgt tttttttttt cttttcttgt tgttattttg taattctcaa acccaggtaa
     5401 gatattggta ttcctgcact ggatttttga aagaaactta gcagaagaca ggatcgagat
     5461 actatagaag catttcccaa gtgttcatac tatactagac ataaatgata acggcgatgt
     5521 ataggttcag gatcggttta agagactcag actttgaaag caacttggaa cggttgatcc
     5581 acctccacat tcgagtaatt aataattctg cagaattagg gatctgtcca tctaggagtt
     5641 gttacccatt tgtcttctgt gtggctgcga ggaacactaa cgcttttaca actgtcagtt
     5701 cacccagtgg tacaactgat tctgactcag tcttccgatt cctgttttgt attttgtttt
     5761 tccacttttt tcctatctct tgattttatt gttgttgtta ttgctattgt tattattatt
     5821 attcgtgatc tttatttcga tgaggggttg ggaagtggga gggagtcgaa ctgagactag
     5881 gggttgagag gatttttttg gtttggtttt cttttctttt ttttttgttt tttttttttt
     5941 ttgtttgttt gtttcatctt tgcgtccaac aggcagaata tggtctgtgt ccaaaacgga
     6001 acttaagtca ggaaggaaac cattcagcgt aaacaagcac aacatgtagt ctgtcggctg
     6061 tctggaagca aaaataaatt aataaataaa taataaataa gtaaaagaca cacacggagg
     6121 tgaagatgaa atgtgatgga ttccgagaca atggggcacc aaggcctgta ggcctcctct
     6181 tgattttgct ttggttatgt ttgttttcct tagagatgtt tttttcctca cgggacttga
     6241 agtgactcat ctctgtgcag taatggtttc gccatatgct catttcaagt attatagaca
     6301 tatgtaatgg tgaaatatat gaactgtggc ctttttcatt cttgttattt gtgatgcaat
     6361 taagtgaaga gaagaaaaaa aaaagcagag atttaccatg tatcagtgcc tggctttttg
     6421 ttataaagct tcgtctgtct agtgctcttt ttgctataaa aatagactgt agtacaccct
     6481 agtaggaaaa aaaaacccta aatttaaaaa taaaaaaata tatttggctt atttttcgca
     6541 ggagcaatcc ttttatacca tggatattac aaaaaaaaaa attgtcagat tctgaatatt
     6601 tcttctttgt agatttttgg aatcattata agtaaaagtt tgttacttta ttttactatt
     6661 taaaagatgt tattttgcca tgtgttactg agatgaaact gtatggtata gcttcttctg
     6721 ttcgtttttt gtttccggtt ttttgtttgt tcgtttttgg tttttttttt ttttgtttgt
     6781 ttgttttgtt ttgttttttt ttcttagttg taggtcgcag taaggacttt tccttttgtt
     6841 tttgtttttt cgttatgttt tgttttgttt ttgcgactgt acacatagct gcagcattaa
     6901 aaacttttaa aaaaatctgt taaaaaaaaa agaaaaaaaa gggaaaacgt ttaaaaaaaa
     6961 aagataaaca gttacacctt gttttcaacg tgtggctgag tgcctcgatt ttttcatgtt
     7021 tttggtgtat ttctgatttg tagaagtgtc caaacaggtt gtgtcctgga cttccttcaa
     7081 gaggcgaaca acccagcttg gtctaggcca tgacctgttc ccatctgtag ttactcgatg
     7141 aagtcatgta catgaccgtt ctgtagcaat aaatgtgcca tttttataaa c
//
