LOCUS       XM_039110920            4645 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus transcription factor 24 (Tcf24),
            transcript variant X2, mRNA.
ACCESSION   XM_039110920
VERSION     XM_039110920.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039110920.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4645
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4645
                     /gene="Tcf24"
                     /note="transcription factor 24; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     ESTs, 2 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 6 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:680678"
                     /db_xref="RGD:1589398"
     CDS             732..1244
                     /gene="Tcf24"
                     /codon_start=1
                     /product="transcription factor 24"
                     /protein_id="XP_038966848.1"
                     /db_xref="GeneID:680678"
                     /db_xref="RGD:1589398"
                     /translation="MERGRPSSSPRSAEPAPPAAAAAAAARDSSPGQTGAGPTGPGGV
                     AARSGSGRPAAANAARERSRVQTLRHAFLELQRTLPSVPPDTKLSKLDVLLLATTYIA
                     HLTRSLQDDTDAPGDPSLGALRGDGYLHPVKKWPMRSRLYIGATGQFLKHSVPGEKGS
                     HNDAPAASPP"
ORIGIN      
        1 aaatgttggc gaatctataa atggccgtga cactttatat ctgatttctg agccttcaaa
       61 gaggaaaccg cgctgcttcc taacccggtt cagagagtcc ggctgggctg cggcgaggac
      121 cgcgtcgtcc acggcgacgg cgggcgcggg ctgcggcgct gagtcctgcc ggcgccgcgg
      181 ccagccggag cctgtgggcg agcgggtgcc gaggcgggaa ggcggccgtg gcggtagcgg
      241 gactctagat cacggtgtac tgagttttta ctgccagaat ctttacctcg taagattaaa
      301 ggcgggcggg gacccacact tgacggctct gcccctaagt cccggggtac taagccgcgg
      361 ggtcccacct cagccccgac actgcagagc gttctcaacc tttcggccag agggggcgga
      421 gccaggcgtc cgccccgccc ccgagcggtt tgattgatga acctgtccac cgagggggcg
      481 gctctgggac gcgcctgccc ctaacctaag gctcgggtgg gggaccctct cggcccgact
      541 ttgctggctc ccgctggctg gcttcggacg cctacataaa aggcgcacag aggaggaacg
      601 gggatggaat gaccgccccg acgcccctgg ccgcctagcc ctgctcagcc gagccccgca
      661 ccgccgctcc ggggaaaggt gaggtgccgc aagtccgagt gcgcgccgcg ggaaccggag
      721 ccgcagccgc catggagcgc ggccgtccct ccagcagtcc acgcagcgcc gagcccgccc
      781 caccggccgc cgccgccgcc gccgccgccc gcgactcgag cccagggcag accggagccg
      841 ggccgacagg ccccggcggg gtcgcggcgc gctccgggag tggccgtcca gcggctgcga
      901 acgccgcgcg ggagcgcagc cgcgtgcaaa ccctgaggca cgccttcctg gagctgcagc
      961 gcacgctgcc gtcggtgccg ccggacacca agctgtccaa gttggacgtg ctgctgctgg
     1021 ccaccaccta catcgcccac ctcacccgca gcctgcagga cgacaccgac gcgccgggag
     1081 accccagtct gggcgccttg cgaggtgacg gctatctgca cccagttaag aagtggccca
     1141 tgcgatcaag actgtatatc ggtgcaactg gtcagtttct gaagcattct gtccctggag
     1201 aaaagggaag ccacaacgat gctccagccg cctccccgcc gtaggccgtg cgatggggcc
     1261 tggcagagca gtagctgtta tcaaagactg ggagataatt gtatttattg cattggacct
     1321 aacaaacact gtttctgaaa gtttacattg taacctgtag ttgaatatca aaatctgtgt
     1381 aaataaatgt ggaatgcaat agtcagccct gtataaaaat atatagctta ttagtaattg
     1441 tgtccatgct gaataagaga agtataaaag gtgtagtaag aagagaagct gtgtgaagaa
     1501 gtgagagatg cacatgagcg tagagttgta cagacccaaa caacacatac actgtctgta
     1561 gtgaatctgt tacaaactaa gaagctgatg cgaatacagc cctttcggtt ttagaaaaga
     1621 gaccccggag caggcatagt gctgtgtctg caatcctagt tccgagatgc agagacaggt
     1681 agttcgctgt gagttcaagg ccagtctgct ctacatagag tttggggtca gccagggcta
     1741 cacagtgaga cgctgtctca aagaataaat aaaatgtgtt tatgtgttta tatagtattc
     1801 aatttttgtg aaaaccagtg tgtattttga gttggccatt tcagttagaa gatataaaat
     1861 cactattcag cctctgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg
     1921 tgtgtgtgtg tctgtgtatg tgtgaagatt gttgcagtaa cttttatctg tagttatttt
     1981 ttctggatag aaaatgtata tggaacatta ggaatgtttt tctctatgaa acatggtata
     2041 gtcacctttc aagaggttgg tcaatagttg gatctaacca cacaagacca gtatgaacag
     2101 gctcaggatt actggctgtc ctgggttcat cacccagtct cctggcacca ccatatccac
     2161 cctgtctcct ttcccagcct gggtacttag gcaagctcag gtagttaggc agcccgggga
     2221 ggtggcattt tcagcactga tttgggagtt ctgcctgtga tcggaactgt gagagagtct
     2281 acagacacag ataaactcag gcttgagtct gcctgcccct tatgaaccag cagacctttc
     2341 tcactgcacc atacactacc atggccgagg gatcgtgttc aacaagagga agcagcttgg
     2401 gctggcttag tgggaaaagg tgcttgcccc tgagccagac atcatgagtt cagcaccaca
     2461 acctacacaa tggaaggaga gaactgacct ccacatgacc tccacacacc ccactacata
     2521 aaacataaca ggaagagcac ccagtgacag cgttagcaga gccctgactt ggatgatacc
     2581 gacttttacc tcctatatta caaaggagat agatttttct ctgacattta attcaattgt
     2641 tgaatatggt aacagattac atgaagttgg aaaatctccg aagtcccatg tagccagagt
     2701 catcgtacac aggttttggg gggaacatta ctgaaccctg aatgggatat acagagatga
     2761 gacttttttt tttttttggt tctttttttt tcggagctgg ggaccgaacc cagggccttg
     2821 cgcttcctag gtaagcgctc taccactgag ctaaatcccc agccccagag atgagacttt
     2881 taccccattc ctttgctaac atgcccccct cacctctcct accctctttc agccgcgaag
     2941 tttattcatt tcctgagaac ccagttctaa agttgctgaa ctcattttaa ggttggcaag
     3001 gaaaaagacg tattagtgga ctcggctgaa tttacgtaac agtcaaaaac cccactttct
     3061 ggtgcccagc tttccagtaa tctgcggcag tgaagttaaa gatcaggtga cagccaagcc
     3121 tgctgttcag ataattcaac ctgtggccga gttggtctat atctgatagt ttgtaagttt
     3181 tatttatttt aatgtgattg ttttccttta cacgtgaccg atgaagtgtt tctacatgtc
     3241 atttggtttc tacgcattgc cgtagaagac agttgtgtgt gcacttaaac ttctatgaac
     3301 acattcacca actcgtttaa catgaaagaa aaagtaaact gtgatttgga ctcggccgtt
     3361 cagtgttaac ttcatctgca caggtagcat agtttttatc ataagggatt aactttttcg
     3421 tctgaaggga atattaactt catggcttat tgtcttcata agaaaaatgg cttcggacta
     3481 actggctcat ttggctcttt ctccttctgc ctcccagtaa gagctccagt ctcttccctg
     3541 tcagtctcct ctttgatctg caatccagtt cattcactaa agcctcagcc caatcttctt
     3601 cataatttca actctctaca gcagaaaatt atagtctgtt cacagtggcc gtcatccctc
     3661 cagtcatgac accccttgct ctggcatgag gagaatgctt cttgtactgt gtcacttgtg
     3721 gtccttgcca ggttacttga agacagactg gagagtttta caaatgttca tcatgcccac
     3781 ctgagttcta ttagcacaga catggtcagg ccagacatga gtctgtcaaa ctttccttaa
     3841 aattaccttc tacaggcctg taaacactaa atattgtagc aaaaatttca tgaaaaaaat
     3901 ttttttttgc taattacact aacctattag tcaggccata attgtacagc attgtggggt
     3961 gggaggacga tggagagggc ttttgttgaa ctattttctc tttatcatcc aattaaatac
     4021 agccttgcct ttgatgctgc agctcatttc catttacccc ttacaaatgt ttccgtgtcc
     4081 aagaggtgta tttcatagca ctctacaaat cactaaatag actaacagct ttaagaagat
     4141 ttaaaacaat cccaaagaag ttgcatcttt ccaactacaa cttcaaatgg gcagactgct
     4201 tcaagtcatg gtgcagacta acgggtatta cgaagataaa atgctaactt gagaagtagt
     4261 ctgttaaata tacactttct ctttgtatga cttgaacatg aaaggtaaaa aatctttcta
     4321 gatttttcgg gacacagtgc tgagggaagg cactcactca gggttcatgc cctcactgtg
     4381 atggcctggg cagagtgtga aagacgatga ctgatacatc tgggtcacat aatctacaca
     4441 agaaatcctc ggttaagttt ctttcacttc atgagttttc ccactggaat ttccaattta
     4501 aaatttcctt gtgatgatcg ttttggggca ggaaaaatgc cattttagaa aaaaaaaact
     4561 agtgtttttt cctgaccata aaaatatgaa cattacagct tgtggttatg taaattactc
     4621 atcaataaag ctacactgaa aagcg
//
