LOCUS       NM_001130574            6502 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus transcription factor 20 (Tcf20), mRNA.
ACCESSION   NM_001130574 XM_001077683 XM_345861
VERSION     NM_001130574.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 6502)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   2  (bases 1 to 6502)
  AUTHORS   Rekdal,C., Sjottem,E. and Johansen,T.
  TITLE     The nuclear factor SPBP contains different functional domains and
            stimulates the activity of various transcriptional activators
  JOURNAL   J Biol Chem 275 (51), 40288-40300 (2000)
   PUBMED   10995766
REFERENCE   3  (bases 1 to 6502)
  AUTHORS   Szpirer,C., Van Vooren,P., Riviere,M., Scohy,S., Collau,G. and
            Szpirer,J.
  TITLE     Localization of 54 rat genes, and definition of new synteny groups
            conserved in the human and the rat
  JOURNAL   Mamm Genome 11 (9), 729-735 (2000)
   PUBMED   10967130
REFERENCE   4  (bases 1 to 6502)
  AUTHORS   Lyngso,C., Bouteiller,G., Damgaard,C.K., Ryom,D., Sanchez-Munoz,S.,
            Norby,P.L., Bonven,B.J. and Jorgensen,P.
  TITLE     Interaction between the transcription factor SPBP and the positive
            cofactor RNF4. An interplay between protein binding zinc fingers
  JOURNAL   J Biol Chem 275 (34), 26144-26149 (2000)
   PUBMED   10849425
REFERENCE   5  (bases 1 to 6502)
  AUTHORS   Sanz,L., Moscat,J. and Diaz-Meco,M.T.
  TITLE     Molecular characterization of a novel transcription factor that
            controls stromelysin expression
  JOURNAL   Mol Cell Biol 15 (6), 3164-3170 (1995)
   PUBMED   7760812
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473950.2.
            
            On or before Jul 28, 2008 this sequence version replaced
            XM_345861.3, XM_001077683.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760389,
                              SAMEA5760434 [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..6502
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q34"
     gene            1..6502
                     /gene="Tcf20"
                     /gene_synonym="AR1; SPBP"
                     /note="transcription factor 20"
                     /db_xref="GeneID:366964"
                     /db_xref="RGD:1594486"
     exon            1..148
                     /gene="Tcf20"
                     /gene_synonym="AR1; SPBP"
                     /inference="alignment:Splign:2.1.0"
     exon            149..5935
                     /gene="Tcf20"
                     /gene_synonym="AR1; SPBP"
                     /inference="alignment:Splign:2.1.0"
     CDS             185..6097
                     /gene="Tcf20"
                     /gene_synonym="AR1; SPBP"
                     /note="stromelysin-1 platelet-derived growth
                     factor-responsive element binding protein"
                     /codon_start=1
                     /product="transcription factor 20"
                     /protein_id="NP_001124046.1"
                     /db_xref="GeneID:366964"
                     /db_xref="RGD:1594486"
                     /translation="MQSFREQSSYHGNQQSYPQEVHSSSRIEEFSPRQAQMFQNFGGA
                     GGGSSGTGSSSSGRRGTAATAAAMASETSGHQGYQGFRKEAGDFYYMAGNKDTVAAGT
                     PQPPQRRPSGPVQSYGPPQGSSFGNQYASEGHVSQFQAQHSALGGVSHYQQDYTGPFS
                     PGSAQYQQQASSQQQQQQQQQQQQQQQQQQQQQQQQQVQQLRQQLYQSHQPLPQATGQ
                     PASGSSHLQPMQRPSALPSSAGYQLRVGQFGQHYQSSASSSSSSFPSPQRFSQSGQSY
                     DGSYSVNAGSQYEGHNVGSNAQAYGTQSNYSYQPQSMKNFEQAKIPPGSQQGQQQPQQ
                     QPQPQQQQQQQPPQQQQQQQHPPQHVMQYTNAATKLPLQSQVGQYNQPEVPVRSPMQF
                     HQNFSPISNPSPAASVVQSPSCSSTPSPLMQSGENLQCGQGNVSMSSRNRILQLMPQL
                     SPTPSMMPSPNSHAAGFKGFGLEGVPEKRLTDPGLSSLSALSTQVANLPNTVQHMLLS
                     DALTPQKKTSKRPSSSSKKADSCTNSEGSSQPEEQLKSPMAESLDGGCSSSSEDQGER
                     VRQLSGQSTSSDTTYKCGASEKAGSSPTQGAQNEAPRLSTSPATREEAASPGAKDTSL
                     SSEGNTKVNEKTVGVIVSREAMTGRVEKSGGQDKSSQEDDPAASQRPPSNSGVKEMSH
                     TSLPQSDPLGGGSKGNKNGDNNSSNHNGEGNGQSSHSAVGPSFTGRTEPSKSPGSLRY
                     SYKESFGSAVPRNVSGFPQYPSGQEKGDFGSHGERKGRNEKFPSLLQEVLQGYHHHPD
                     RRYPRSAQEHQGMASGLEGTARPNILVSQTNELTSRGLLNKSIGSLLENPHWGPWERK
                     SSSTAPEMKQINLSDYPIPRKFEIEPSSSSHEPGASLSERRSVICDISPLRQIVRDPG
                     AHSLGHMGADARIGRNERLNPSLSQSVILPGGLVSMETKLKSQSGQIKEEDFEQSKSQ
                     ASFNKKSGDHCHPTSIKHETYRGNASPGAAAHDSISDYGPQDSRSTPMRRVPGRVGSR
                     ETMRGRSSSQYHDFAEKLKMSPGRSRGPGGDPHHMNPHMTFSERANRSSLHAPFSPNS
                     ESLASAYHTNTRAHAYGDPNTGLNSQLHYKRQMYQQQQEEYKDWASSSAQGVIAAAQH
                     RQEGPRKSPRQQQFLDRVRSPLKNDKDGMMYGPPVGTYHDPSTQEAGRCLMSSDGMPA
                     KSMELKHSSQKLQESCWDLSRQTSPAKSSGPPGMSNQKRYGPPHEPDGHGLAESTQSS
                     KPSNVMLRLPGQEDHSSQNPLIMRRRVRSFISPIPSKRQSQDVKNSNTDDKGRLLHPS
                     KEGADKVYNSYSHLSHSQDIKSIPKRDASKDLPNPDNRNCPAVTLTSPAKTKILPPRK
                     GRGLKLEAIVQKITSPNIRRSASANSAETGGDTVTLDDILSLKSGPPEGGTVANQEAE
                     MEKRKGEVVSDLVSATNQESNVEKPLPGPSEEWRGSGDDKVKTEAHVETASTGKEPSG
                     TMTSTASQKPGGNQGRPDGSLGGAAPLIFPDSKNVAPVGILTPEANPKTEEKENDTVM
                     ISPKQESFPPKGYFPSGKKKGRPIGSVNKQKKQQQQPPPPPQPPQMPEGSADGEPKPK
                     KQRQRRERRKPGAQPRKRKTKQAVPIVEPQEPEIKLKYATQPLDKTDAKNKSFFPYIH
                     VVNKCELGAVCTIINAEEEEQTKLVRSRKGQRSLTPPPSSTESKVLPASSFMLQGPVV
                     TESSVMGHLVCCLCGKWASYRNMGDLFGPFYPQDYAATLPKNPPPKRSTEMQNKVKVR
                     HKSASNGSKTDTEEEEEQQQQQKEQRSLAAHPRFKRRHRSEDCGGGPRSLSRGLPCKK
                     AAAEGSSEKTASDTKPSVPTTSEGGPELELQIPELPLDSNEFWVHEGCILWANGIYLV
                     CGRLYGLQEALEIAREMKCSHCQEAGATLGCYNKGCSFRYHYPCAIDADCLLHEENFS
                     VRCPKHKVRLWR"
     exon            5936..6029
                     /gene="Tcf20"
                     /gene_synonym="AR1; SPBP"
                     /inference="alignment:Splign:2.1.0"
     exon            6030..6079
                     /gene="Tcf20"
                     /gene_synonym="AR1; SPBP"
                     /inference="alignment:Splign:2.1.0"
     exon            6080..6502
                     /gene="Tcf20"
                     /gene_synonym="AR1; SPBP"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggagaaactg ccccctttcc gttttcttcc cgatttctcg ttttcccttc ctccctccct
       61 ccgcgggggt ttgttttcct gccggcctgc atgctgtggg ctgtcagggg gtctggggca
      121 agtgccaggg gaggatgcag ctgcaaagga gggctgctgg cctgctgctg tgctgctgaa
      181 cagtatgcag tcgtttcggg agcaaagcag ttaccacgga aaccagcaga gctacccaca
      241 ggaggtgcac agctcatccc gaatagaaga gttcagccct cgtcaggccc agatgttcca
      301 gaattttggg ggagcaggtg gtggtagcag tggcactggc agcagcagta gtggacggcg
      361 aggaacagct gcgacagcgg cagcaatggc tagcgagacc tctggccatc aaggctatca
      421 gggtttcagg aaagaagctg gagattttta ctacatggca ggcaacaaag ataccgtggc
      481 agcaggaact ccacagcctc ctcagcgaag gccttctggg cctgtgcaga gctatggacc
      541 tccccagggg agcagctttg gcaatcagta tgcaagcgag ggtcatgtga gccaatttca
      601 agcacagcac tctgcccttg gtggcgtgtc tcattatcag caggattaca cagggccttt
      661 ctctcctggg agtgctcagt atcaacagca ggcctctagc caacaacagc agcagcagca
      721 gcagcagcaa cagcaacagc agcaacagca acagcagcaa cagcaacagc agcaagtaca
      781 gcagttgaga caacagcttt accaatcaca tcagcctctg ccacaagcca ctggacagcc
      841 agcctctggc tcatcccatc tacaaccaat gcagcggccc tcagctctgc catcttctgc
      901 tggttatcag ttaagagtgg gtcagtttgg gcagcactac cagtcttctg cttcctcttc
      961 ttcctcctcc tttccttcac cacagcgttt cagtcagtct ggacagagct atgatggcag
     1021 ttacagcgtg aatgctggat ctcaatatga agggcataat gtgggttcta atgcacaggc
     1081 ttatgggaca cagtcaaatt atagctatca acctcagtct atgaaaaatt ttgaacaggc
     1141 aaagattcca ccaggatccc agcaggggca gcagcaacca cagcagcagc cacaacctca
     1201 gcagcagcag cagcagcagc cgccgcagca gcaacagcag cagcaacatc ccccccagca
     1261 tgtgatgcag tacacaaatg ctgccaccaa gctgcctctg caaagccagg tggggcagta
     1321 caaccagcct gaggttcctg taaggtcccc tatgcagttt caccagaact tcagccctat
     1381 ttctaaccct tctccagctg cttctgtggt tcagtctcca agctgtagct ctaccccttc
     1441 tcctctcatg cagagtggtg agaatctcca gtgtgggcaa ggcaatgtat caatgagttc
     1501 ccgaaaccga attttacagt taatgcctca actcagtcca actccatcaa tgatgcccag
     1561 tcctaattct catgctgcag gattcaaagg gtttggatta gaaggggtgc cggaaaagcg
     1621 gctgactgat cctgggttga gtagcttgag tgctctgagt actcaagtgg ccaatcttcc
     1681 taatactgtc cagcatatgt tactttctga tgccttgaca cctcagaaga agacttctaa
     1741 gaggccctca tcatcatcta agaaagcaga tagctgtaca aactcggaag gctcctcaca
     1801 gcctgaagaa caactaaagt cccccatggc agagtcattg gatggaggtt gctcaagtag
     1861 ttcagaagat caaggtgaga gagtgaggca actaagtggc cagagcacta gctctgacac
     1921 cacctataag tgtggagctt cagagaaagc tggctcctca cctacgcaag gtgctcagaa
     1981 tgaggcccct aggctcagta ccagtcctgc aactagggaa gaagctgcct ctccaggtgc
     2041 taaggacaca tcactgtcat ctgaggggaa cacaaaagtc aacgagaaga cagttggggt
     2101 gattgtctcc cgagaagcca tgacaggccg ggtagaaaaa tctggtggac aagataaaag
     2161 ctcccaggag gatgatcctg ctgccagtca gagaccacct agcaatagtg gtgtaaagga
     2221 aatgagccac acatcacttc cacagtcaga tcctctagga ggcgggagca agggaaacaa
     2281 gaatggtgat aataatagct ctaaccacaa tggagaaggg aatggccaga gtagccactc
     2341 tgcagtaggc ccaagtttca caggcaggac tgagcctagc aagtctcctg gaagtttgcg
     2401 ctatagttac aaagagagtt ttgggtcagc tgtaccacga aatgtcagtg gttttcctca
     2461 gtatccttct ggacaagaaa agggggattt tggcagtcat ggggagcgaa aaggtagaaa
     2521 tgagaagttc ccaagtctcc tacaggaagt gcttcagggt taccaccacc atcctgacag
     2581 aaggtatcct agaagtgctc aggaacatca agggatggct agtggcctgg aaggaactgc
     2641 aaggcccaac atcttagtca gtcaaaccaa tgaattaacc agcaggggcc ttctgaacaa
     2701 gagtattgga tccttgttgg aaaatcccca ctggggacca tgggaaagga agtcaagcag
     2761 cacagctcct gaaatgaagc agatcaattt gtctgactat cccattccca gaaagtttga
     2821 gatagaacct tcatcatcat cccatgagcc tggggcctcc ctttctgaaa ggaggtcagt
     2881 aatctgtgat atttccccac taagacagat tgtcagggac ccaggggctc actctctggg
     2941 acacatgggt gctgatgcca gaattggaag gaatgaacgt ctcaacccaa gtttaagtca
     3001 gtcagtcatt cttcctggtg gattggtgtc catggaaaca aagttgaaat cccagagtgg
     3061 gcagataaaa gaggaagact ttgaacaatc caaatctcaa gctagtttca acaagaaatc
     3121 tggagaccac tgccacccta ccagcatcaa gcatgagact taccgtggca atgccagtcc
     3181 tggagcagca gcccatgatt ccatttcaga ctatggccca caagatagca ggtccacacc
     3241 aatgcggcgg gtccctggta gagttggtag ccgggagact atgagaggtc gttcctcttc
     3301 tcagtaccat gactttgcag aaaaattgaa gatgtctcca ggcaggagca gaggcccagg
     3361 gggagaccct catcacatga acccacatat gactttttca gagagggcca ataggagttc
     3421 tttacatgct cctttttctc ccaactcaga aagcctggcc tctgcttacc acacaaatac
     3481 cagggctcat gcttatgggg accctaatac tggtttgaat tcccagcttc attataagag
     3541 acagatgtac cagcagcaac aagaggagta taaagattgg gccagcagtt ctgctcaggg
     3601 agtgattgct gctgcacaac ataggcagga agggccacgg aagagcccac ggcagcagca
     3661 gtttcttgac agagtacgga gccccctgaa aaatgacaaa gatggtatga tgtatggccc
     3721 accagtaggt acataccatg acccaagcac tcaggaagct gggcgctgtc tcatgtctag
     3781 tgatggcatg cctgccaaaa gcatggaatt gaagcacagc tctcagaagt tacaagagtc
     3841 ttgttgggat ctttctcggc agacttctcc agccaaaagc agtggaccgc caggaatgtc
     3901 taatcaaaaa cggtatgggc caccccatga gccggatgga catggactag ctgagtctac
     3961 acagtcatcc aaacctagta atgtaatgtt aaggcttccg ggtcaagagg atcattcttc
     4021 tcaaaatccc ttaatcatgc ggaggcgggt tcgttctttt atctccccta ttcccagtaa
     4081 gagacagtca caagatgtaa aaaacagcaa cactgatgat aaagggcgcc tcctccaccc
     4141 atcaaaggaa ggtgccgata aagtgtacaa ttcctacagc catctttctc acagtcagga
     4201 tatcaagtct atccctaaga gagatgcctc caaggacctt ccaaacccag acaatagaaa
     4261 ctgtcctgct gttaccctga caagccctgc taagaccaaa atactgcccc cacggaaggg
     4321 acggggatta aaattggaag ctatagttca gaagatcaca tccccaaata ttaggaggag
     4381 tgcatctgca aacagtgctg agactggggg agacacagtc acactggatg atatactatc
     4441 tctaaagagt ggtcctccgg aaggtgggac tgtggctaat caagaggctg agatggaaaa
     4501 gcgaaagggt gaggtggtat ctgacctagt cagtgcaact aaccaggaat cgaatgttga
     4561 aaaacctctt ccagggcctt ccgaagagtg gcgtggcagt ggggatgaca aagtcaagac
     4621 agaggcacat gtagaaacag cttctactgg aaaagaaccc tctggtacta tgacatccac
     4681 agcttcacag aagcctggtg gtaaccaagg gagaccagat ggttccctgg gtggggcagc
     4741 acctctaatc tttcctgact caaagaatgt agctccagtg ggcatattga cccctgaggc
     4801 aaaccccaag actgaagaga aggagaatga tacagtcatg atttcaccca agcaagaaag
     4861 tttcccccca aaagggtatt tcccatcagg aaagaaaaag gggagaccaa ttggtagtgt
     4921 gaataaacaa aagaaacaac agcagcaacc acctccacct cctcagcccc ctcagatgcc
     4981 agaaggttct gcagatggag agccaaagcc aaaaaagcag aggcaaagga gggagagaag
     5041 gaagcctggg gcccagccaa ggaagcggaa aaccaagcaa gcagttccca ttgtagaacc
     5101 ccaagaacca gagatcaagc taaagtatgc tacccagcca ctagataaaa ctgatgccaa
     5161 gaacaagtca tttttccctt atatccatgt agtaaataag tgtgaacttg gagctgtttg
     5221 tacaatcatc aatgctgaag aagaagaaca gaccaaattg gtgaggagcc ggaagggtca
     5281 gagatctctg acccctcctc ccagcagcac agaaagcaag gtgctcccag cttcatcctt
     5341 tatgctgcag gggcctgtgg taacagaatc ttctgttatg gggcacctgg tttgctgtct
     5401 ttgtggcaag tgggccagtt accgtaacat gggtgacctc tttggaccct tttatcccca
     5461 agattatgca gccactcttc cgaagaatcc acctcctaag aggtccacag aaatgcagaa
     5521 caaggtcaag gttcggcaca aaagcgcttc taatggttct aaaactgaca ccgaggagga
     5581 ggaggagcag cagcagcagc agaaggagca gaggagccta gctgctcatc ctaggttcaa
     5641 gcggcgccac cgctccgaag actgtggtgg aggtcctcgg tccctgtcca gggggctccc
     5701 ttgtaaaaaa gcagccgctg agggcagcag tgaaaagact gcttcagaca caaagccctc
     5761 tgtacctacc acttcagaag gcggtcctga gctggagtta caaatccctg aactacctct
     5821 tgacagcaac gaattttggg tccatgaggg ttgtattctc tgggccaatg gaatctacct
     5881 ggtctgtggc aggctctatg gcctgcagga agcgctggaa atcgccagag agatgaaatg
     5941 ctcccactgc caggaagctg gcgctactct gggctgctac aacaaaggct gctccttccg
     6001 ataccattac ccgtgtgcca ttgacgcaga ttgtttgctg catgaggaga atttctcggt
     6061 gaggtgcccc aagcacaagg tgagactgtg gagatgagaa ggtggtggac acacttgttg
     6121 gaatggaatc ctcctgctgt gcaaccacac cccactctgc cctgccctgc accccgctgc
     6181 gcctgcccat gccagcactt ccctcctatg ttctcacatc tcactcaaac tggtgacacc
     6241 acaggaaaag aaagacacaa gatgttggaa tggctgtttc catggacaca atctccatag
     6301 tgacaatgtg gggagggggg aggggtgggc tgatggggaa acggggagtt aaaagggagg
     6361 gataaaaaat atatatatat aaatctattt ttagtctgga aagactttgt ttaaatgaaa
     6421 ggtgcgctat cccttttgat tctattttaa aattatctag ttaactcaaa atttgttcca
     6481 atgacaatga aatttaaatg tg
//
