LOCUS       XM_008766219            4223 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus transcription factor 12 (Tcf12),
            transcript variant X17, mRNA.
ACCESSION   XM_008766219
VERSION     XM_008766219.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_008766219.3.
            
            On Jul 26, 2016 this sequence version replaced XM_008766219.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4223
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4223
                     /gene="Tcf12"
                     /gene_synonym="SCBP alpha; SCBPA"
                     /note="transcription factor 12; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     mRNAs, 34 ESTs, 1 long SRA read, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 88 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:25720"
                     /db_xref="RGD:3829"
     CDS             256..1899
                     /gene="Tcf12"
                     /gene_synonym="SCBP alpha; SCBPA"
                     /codon_start=1
                     /product="transcription factor 12 isoform X17"
                     /protein_id="XP_008764441.1"
                     /db_xref="GeneID:25720"
                     /db_xref="RGD:3829"
                     /translation="MCECTVLRACAACVGICVGEKLCASAANNSFKINMYCAYPVPGM
                     GSNSLMYYYNGKTVYAPSPNSDDFNRESPSYPSPKPPTSMFASTFFMQDGTHSSSDLW
                     SSSNGMSQPGFGGILGTSTSHMSQSSSYGSLHSHDRLSYPPHSVSPTDINTSLPPMSS
                     FHRGSTSSSPYVAASHTPPINGSDSILGTRGNAAGSSQTGDALGKALASIYSPDHTSS
                     SFPSNPSTPVGSPSPLTAGTSQWPRAGGQAPSSPSYENSLHSLQSRMEDRLDRLDDAI
                     HVLRNHAVGPSTSLPTSHSDIHSLLGPSHNAPIGNLNSNYGGSSLVTNSRSASMVGTH
                     REDSVSLNGNHSVLSSTVAASNTELNHKTPESFRGGVQNQSGSVVPTEIKTENKEKDE
                     NLHEPPSSDDMKSDDESSQKDIKVSSRGRTSSTNEDEDLNPEQKIEREKERRMANNAR
                     ERLRVRDINEAFKELGRMCQLHLKSEKPQTKLLILHQAVAVILSLEQQVRERNLNPKA
                     ACLKRREEEKVSAASAEPPTTLPGTHPGLSETTNPMGHL"
ORIGIN      
        1 tgtgtgtgtg tgtgtgtgtg taaattggtc attctttggt acatttgcgt ttaggataca
       61 gtgtttcttt ttatttagat acagtgtgtg gctttggtat atttatttca gcactccaga
      121 gtttgtctat ttggtatcct ccaccaatgc aaggatttgg tggaaattga aagaagttga
      181 ttacagcata aaccctccct ctgctctgtg agttggttca gtcctatttt gcataagttc
      241 cttttgagta gttccatgtg tgaatgcaca gtactaaggg cttgtgctgc ctgtgtgggt
      301 atatgtgttg gagagaagct gtgtgcgtca gctgcaaata acagtttcaa aatcaacatg
      361 tattgtgctt atcctgtccc tgggatgggc agcaattctt tgatgtatta ctacaatggg
      421 aaaacggtgt atgcaccatc cccaaattct gacgatttca accgtgaatc tcctagttac
      481 ccatctccca agccaccaac cagtatgttc gctagcactt tctttatgca agatggcacc
      541 cacagttctt ctgacctttg gagttcatcg aatgggatga gccagcctgg ttttggtgga
      601 attctgggga cctccacttc ccacatgtct cagtccagta gttatggcag tcttcattca
      661 catgaccgct tgagttatcc tccacactca gtgtcaccaa cagacataaa cacaagtctt
      721 ccgccaatgt ccagcttcca ccgtggtagt accagcagct caccatatgt tgccgcctca
      781 catactcctc ccatcaatgg atcagatagc atcctgggaa cccgagggaa tgctgctgga
      841 agctcacaga ccggtgatgc acttgggaag gccttggcat ctatttattc tcctgaccac
      901 acaagcagta gttttccatc aaacccatca acaccagtag gatctccttc acctctcaca
      961 gcaggtacca gtcagtggcc cagagctgga gggcaagctc cttcatcccc aagctatgaa
     1021 aactcacttc actccctgca gtctcgaatg gaagaccgtt tggacaggct ggatgatgct
     1081 atccatgtgc tacggaacca tgcagttgga ccttctacca gtctgcctac tagccacagt
     1141 gatatacaca gtttattggg accatcccat aatgcaccaa ttggaaacct caattcaaac
     1201 tatggaggat caagccttgt tacaaatagt cgatcagctt cgatggtcgg aactcatcgg
     1261 gaagattcgg tcagtctcaa tggcaatcat tcggtcctgt ctagtactgt tgctgcctca
     1321 aacacagaac tgaaccataa aacaccagaa agtttcagag gtggtgtaca aaatcagtct
     1381 ggaagtgttg ttccaacaga aatcaagact gaaaacaaag aaaaagatga aaaccttcat
     1441 gaacctcctt catcagatga catgaaatca gatgatgagt cctcccagaa agacatcaaa
     1501 gtctcatcta gaggcagaac aagcagtacc aatgaagatg aggatctgaa tccagaacag
     1561 aaaatcgaaa gggagaagga aaggcggatg gctaacaatg ccagagagcg cttgcgtgtg
     1621 cgggatatca atgaggcatt caaggagctc ggccgaatgt gtcagcttca tttgaagagt
     1681 gagaaaccac agacaaaact tctcattctt catcaagccg tggcagtcat ccttagtcta
     1741 gaacagcaag tcagagagag gaacctcaac cccaaagcag cctgccttaa gagaagagaa
     1801 gaagaaaagg tctctgctgc gtcagcagag ccgcccacca cgttgccagg aacccatcct
     1861 gggcttagtg agacaaccaa ccctatgggt catctgtaaa catcagccag ttccagagtc
     1921 atcagtaggc tagatagaag gtgacctctc ctcataaaga tttggacaac tcagattatc
     1981 tgaagacaca aacctggcag gagggagaag aaaaagcaaa acacttgaaa caagaaactc
     2041 atatgtaatc ctatgatcaa agcaactggt caacacttcc atcagaagtg aggataggaa
     2101 gctcatcaga gaacgtcggc ccgtgaggtg tttgcagcgt atcattctgc tgtaagcaat
     2161 gtgtcgcttc tgcacaatca gagactgtct catctctcca ctcaccgtgg aagttgcctt
     2221 gtgcctaaac tgaattgaca aatgcattgt aactacaaat tttatttatt gatatggaac
     2281 tgtgaggtct acatataaag ggaaaagttc atgtgggaag ctgatgtaca ctcagctgat
     2341 gccagcattg ttaaagctgt tcacagagca gtggcaacca ttggccctta gcattcccgg
     2401 catacctgtt agtgtcttaa aaaggaaggg agtcctttgt tgccctctcc gaccttcgcc
     2461 atatgaatag tgttttccat gaaataggaa actattactt ggtatagcat ttctctcttg
     2521 ttttttttca ctcattttta ttttctcttt gtgggtgtta tgtttgatct gagtctgcat
     2581 agtttatggt cacagtccag aaccctcctt acagccctgt gtgctttgtt catgtccctg
     2641 aagtgataag caggcaccgt ctgtgaccat agcctagcta agatttttga aaggggaagt
     2701 ttttgttccc tggatttgcc cccaaataaa cattgcttta tttctaataa tcactaagac
     2761 ttttcaggct tctaggtttc atagtaaagc tataatagca agaagtgtaa cttacaaagg
     2821 agagtctact ttttaggaat tgctttgttc cgagcagtaa gtactacaca atatagtact
     2881 tgtaaagtgt tagctgttaa gtaagcacaa aatgcattca atacaataca aagatgactt
     2941 ttcgtggtga gcgtaagaaa acccggtagt caccgggaca ggcagtgtga tgagtgcact
     3001 caaccactct gaggctaatt acctatggaa tccaagagca atggtcacat ttccttattc
     3061 tagctttact tctctgtcct ttgagtggct ggtcagtgtg gggtagggta ggagggtgac
     3121 ttaatcacct acaaccacct gcccccgccc cacgaagagc cagattagca ccgagctgtc
     3181 cctgtcagtc catctagcat tgtgcattag ggcaccctcc gtctctctct aatcctttac
     3241 agttgttttt aagacacagt aatcacttta aacttccatg aactctgtct tccaccacag
     3301 cagccctggg agaggaaaac atgctgagca caatggtctt ggctaagtta ctccttagag
     3361 ccaacatcag tggcaatccg cacacagaag aaaaatccca gaccgttctg taacttacag
     3421 acaccggaga atttgaaaga acaaaaacca ttaagacagc acttcagatt ctcatcagga
     3481 ctatttctaa caagtcagtt tttggtgaac gtagtggact taatctgtat atgttctcca
     3541 gttacatcag actttctctg tggccttgtt cttcatttca gtgttaatca gctaaaacag
     3601 aattgttgct atgacgtggg agtgaacata agccactgcc tggccttttt ttttcttcag
     3661 agcttgttgt ctttttcgct atgttagact ttgcagaatg cccagaagct ttccttcata
     3721 aaatagaaag aaaaaacatt tggcttattt ttcactgtag ctagtctttt atacaataat
     3781 cttgtaagaa aatttcttga attctaaata ttactctttc tagatttttg aaatcaaaag
     3841 ttttcagtaa aaagtttctt actttatttt attatattag gtagttaaag aaaatgtagg
     3901 gttatttacc ataacctgtt cattaatatc agaaatttac aatagcattt taagagcata
     3961 gtaggttcta gcataccgtg tagttcctat ggagtattgt gagagcgaat tgttggagat
     4021 gggctgcttt tcatctcgtt ctccagtttc cattgttggt ttattgcaga tttgtatcct
     4081 gtgtcaaatt caaggtatta ttgataaacc ttttcaacca gcagcaagaa gttcaaattt
     4141 ttttttctgt cgctgtaaca gaaaacacag ttatgtatat aacatttatg tagcaataaa
     4201 tgtgccatcc tttttttaac ata
//
