LOCUS       NM_001014260            1575 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Rattus norvegicus transcription elongation factor A N-terminal and
            central domain containing 2 (Tceanc2), mRNA.
ACCESSION   NM_001014260 XM_345558
VERSION     NM_001014260.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1575)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1575)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            DY316983.1, BC083757.1 and AI043997.1.
            
            On Nov 25, 2008 this sequence version replaced NM_001014260.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: DY316983.1, BC083757.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-13                DY316983.1         1-13
            14-1556             BC083757.1         1-1543
            1557-1575           AI043997.1         1-19                c
FEATURES             Location/Qualifiers
     source          1..1575
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="Sprague-Dawley"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q34"
     gene            1..1575
                     /gene="Tceanc2"
                     /note="transcription elongation factor A N-terminal and
                     central domain containing 2"
                     /db_xref="GeneID:366431"
                     /db_xref="RGD:1359481"
     exon            1..105
                     /gene="Tceanc2"
                     /inference="alignment:Splign:2.1.0"
     exon            106..245
                     /gene="Tceanc2"
                     /inference="alignment:Splign:2.1.0"
     CDS             147..770
                     /gene="Tceanc2"
                     /note="transcription elongation factor A (SII) N-terminal
                     and central domain containing 2"
                     /codon_start=1
                     /product="transcription elongation factor A N-terminal and
                     central domain-containing protein 2"
                     /protein_id="NP_001014282.1"
                     /db_xref="GeneID:366431"
                     /db_xref="RGD:1359481"
                     /translation="MDKFVIRTPRIQNSPKKKLKEKVYKQATIESLKRVVVIEDIKRW
                     KTVLELPEQTKENLVAALQELKKKIPSREVLRSTRIGHAVNKVRRHSDPEVAGLAKEV
                     YTEWKTFIENHLDRPSIEVHSDPKTESFRKNAQKLLSEALELKMDHLLVENIERETFH
                     LCSRLINRPYRRTVRALVFTLKHRAEIREQVKSGTLPVGTFVQTHKK"
     exon            246..387
                     /gene="Tceanc2"
                     /inference="alignment:Splign:2.1.0"
     exon            388..581
                     /gene="Tceanc2"
                     /inference="alignment:Splign:2.1.0"
     exon            582..1560
                     /gene="Tceanc2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gaggaactgg gccccggaag aagtgtataa aatagttaca acgcgtggtc cggctggagg
       61 tctggagggg tcaagagacc aagctgtagg caggctgatt tcccgaatac acctcaagcc
      121 cctgaagata atcagagccc ccagcaatgg ataaatttgt cattcgaacg cctaggatcc
      181 agaatagccc gaagaaaaaa ctcaaagaaa aggtttacaa gcaagccacg attgagtctt
      241 tgaagagagt tgtggttata gaagacataa aaaggtggaa aactgtgttg gagcttcctg
      301 agcaaaccaa agaaaacctg gtcgccgccc tacaagaatt aaagaagaag ataccctcca
      361 gggaggtgtt gcggtcgaca aggataggtc atgctgtgaa caaggtgcgc aggcactcgg
      421 acccagaggt ggcgggcctt gccaaagaag tttacactga gtggaaaact ttcattgaaa
      481 accatctgga cagaccctct attgaagtcc acagtgatcc aaaaactgag tcatttagaa
      541 aaaatgccca gaaattactt tcagaagccc tggaattgaa gatggatcac ctactggttg
      601 aaaatattga acgggaaacg tttcatctct gctcgcggct cattaacagg ccctaccgga
      661 ggacggtgcg cgctctggtc ttcacattaa agcaccgagc tgagatccgg gagcaggtga
      721 agagcgggac gctgccggtc ggcacgtttg tacagaccca caaaaagtga cccgaggacg
      781 gcccagcgtt gggccccgct caccattcaa agactctttt gagtttgggt gatgcggatg
      841 ttggctgtgc tagatattcc cacggtgcca ttcctgcaga cggagcgtgg ggagccctgg
      901 gagcctgtgg gagcggcttc attagctgcc tcgcgctggc actgcctgac gggtcgaaca
      961 gggctgtcac taggaagcgc catccagttg ccatcaccca acacaatgga agggtgacag
     1021 gtttcactgt gagcttgcca aggacacctc taaactcccc catgtcaggc agatgaagtt
     1081 accactttat ttcgccaccc tgcaggtaac tgaaactcaa ttaccgctgc tcctcacttg
     1141 gttccatccc cctgagttta gacagctccg atgcctctca gaactcccct gcctgctctc
     1201 tttgctctac cccaggggtg agcccactgg agcccgagac cagccctgct tgccttcgct
     1261 cacttatctg agcctttcag ctctccctgg aagaccttcg gggatgggct cctgagcccc
     1321 catgctgagg cttctaatga ggagctggcc tgaagcttcc ctgcacctca gggttcattt
     1381 gaatacaggc tctgttgaag atgcataatg aaatttctct tgcagtgact tactgcagta
     1441 agaaaaaaat gcatacgtga agattttcaa tgaaatacat ctatacgtgc ccgcttgggt
     1501 gattatgtaa atgctcttgc tctttaaaaa gtaataataa actgagatat accaaatcaa
     1561 aaaaaaaaaa aaaaa
//
