LOCUS       NM_001329156            1137 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus transcription elongation factor A like 5
            (Tceal5), mRNA.
ACCESSION   NM_001329156 XM_006227465
VERSION     NM_001329156.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1137)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000021.1.
            
            On Jul 2, 2016 this sequence version replaced XM_006227465.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643296.40835.1,
                                           SRR26643298.32635.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760386,
                                           SAMN12840107 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-107               JAXUCZ010000021.1  103998831-103998937 c
            108-175             JAXUCZ010000021.1  103997509-103997576 c
            176-263             JAXUCZ010000021.1  103997041-103997128 c
            264-1137            JAXUCZ010000021.1  103996047-103996920 c
FEATURES             Location/Qualifiers
     source          1..1137
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq32"
     gene            1..1137
                     /gene="Tceal5"
                     /note="transcription elongation factor A like 5"
                     /db_xref="GeneID:680282"
                     /db_xref="RGD:1594149"
     exon            1..107
                     /gene="Tceal5"
                     /inference="alignment:Splign:2.1.0"
     exon            108..175
                     /gene="Tceal5"
                     /inference="alignment:Splign:2.1.0"
     exon            176..263
                     /gene="Tceal5"
                     /inference="alignment:Splign:2.1.0"
     exon            264..1137
                     /gene="Tceal5"
                     /inference="alignment:Splign:2.1.0"
     CDS             290..892
                     /gene="Tceal5"
                     /note="transcription elongation factor A (SII)-like 5"
                     /codon_start=1
                     /product="transcription elongation factor A protein-like
                     5"
                     /protein_id="NP_001316085.1"
                     /db_xref="GeneID:680282"
                     /db_xref="RGD:1594149"
                     /translation="MEKFYKENEGKPENKGRAEDEGSTEEGGKADEDKSDTEGKPARQ
                     GKLEEEGGPGEQAQQKGEGKPEKQGKSDGEGKRPGESKPDSQAKSASEARAAEKRPAE
                     DYVPRKAKRKTDRGTDDSPKNSQEDLQDRHVSSEEAMRECADMTRAQEELRKRQKMGG
                     FHWVPRDAQEALVPRGQRGVRGVRGGGGRGQKDLEDAPFV"
ORIGIN      
        1 aagtctctct cttccaggta ccagctacca gctccttatc tccgtgaagg aaggcagact
       61 tgaaaccgaa cgacagaggg gggagcaact gccctatagc ccggcaggtc ttcaagtctg
      121 tggctgtggg cagcaaccca gccaaggaaa gggaagccct gcagcaccag tgcagcacat
      181 tcctttaatg gtaggaagac acacccttga cgtttcttga aaggttggtc catgtaagaa
      241 gtgtgtaggg aaaggaatct aaggacaggc aacaaagaaa aattgcaaca tggaaaagtt
      301 ctacaaagaa aatgaaggaa agccagaaaa caagggaagg gcagaagatg aaggaagtac
      361 agaagaggga ggaaaagcag atgaagacaa gtcagataca gaggggaaac cagcgcgcca
      421 gggcaagcta gaggaggagg gagggccagg tgagcaggca caacagaaag gtgaggggaa
      481 gcccgagaag cagggaaagt ctgacgggga gggcaagcgc ccaggggaga gcaagcccga
      541 ttcccaggca aagtcagcca gcgaggcgcg agctgcagaa aagcgccccg ctgaagatta
      601 tgtgccccgg aaagcaaagc gaaaaacaga tagggggaca gatgattctc ccaagaactc
      661 ccaggaggac ttacaggaca ggcatgtgag cagtgaggag gcgatgagag agtgtgcaga
      721 tatgacaagg gctcaggaag agctgaggaa gaggcagaaa atgggtggtt ttcactgggt
      781 accaagagat gcacaggagg ctttagtccc caggggccaa cggggagtca ggggggtgag
      841 gggaggcgga ggcaggggtc agaaggactt ggaagatgct ccatttgttt aatgccttca
      901 gcctttccgt tctggtttct ttgatgggaa atattgccag ccctgctttc cctggtaggc
      961 ttttgccggg ctctgtgctt taaccttgtg ctgagatttt cctttaggtg tcactcctgt
     1021 taccagcaga cagcactatg tcttttagta aaggacttcc acccatgtgc atggaagaaa
     1081 tgttcatggt ctactgtaaa ataataaaga gaacagtttg cagaaccaca gatacag
//
