LOCUS       NM_001015008            1240 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus transcription elongation factor A3 (Tcea3), mRNA.
ACCESSION   NM_001015008 XM_216552
VERSION     NM_001015008.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1240)
  AUTHORS   Kwak,H. and Lis,J.T.
  TITLE     Control of transcriptional elongation
  JOURNAL   Annu Rev Genet 47, 483-508 (2013)
   PUBMED   24050178
  REMARK    Review article
REFERENCE   2  (bases 1 to 1240)
  AUTHORS   Nishiyama,A., Xin,L., Sharov,A.A., Thomas,M., Mowrer,G., Meyers,E.,
            Piao,Y., Mehta,S., Yee,S., Nakatake,Y., Stagg,C., Sharova,L.,
            Correa-Cerro,L.S., Bassey,U., Hoang,H., Kim,E., Tapnio,R., Qian,Y.,
            Dudekula,D., Zalzman,M., Li,M., Falco,G., Yang,H.T., Lee,S.L.,
            Monti,M., Stanghellini,I., Islam,M.N., Nagaraja,R., Goldberg,I.,
            Wang,W., Longo,D.L., Schlessinger,D. and Ko,M.S.
  TITLE     Uncovering early response of gene regulatory networks in ESCs by
            systematic induction of transcription factors
  JOURNAL   Cell Stem Cell 5 (4), 420-433 (2009)
   PUBMED   19796622
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC091180.1.
            
            [WARNING] On Mar 20, 2025 this sequence was replaced by
            NM_001015008.2.
            
            On Apr 20, 2005 this sequence version replaced XM_216552.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC091180.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5756307, SAMEA5760383
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1240
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..1240
                     /gene="Tcea3"
                     /note="transcription elongation factor A3"
                     /db_xref="GeneID:298559"
                     /db_xref="RGD:1311369"
     exon            1..152
                     /gene="Tcea3"
                     /inference="alignment:Splign:2.1.0"
     CDS             84..1130
                     /gene="Tcea3"
                     /note="transcription elongation factor A (SII), 3"
                     /codon_start=1
                     /product="transcription elongation factor A protein 3"
                     /protein_id="NP_001015008.1"
                     /db_xref="GeneID:298559"
                     /db_xref="RGD:1311369"
                     /translation="MGLEEELLRIAKKLEKMVARKKTEGALDLLKKLNSCQMSIQLLQ
                     TTRIGVAVNGVRKHCSDKEVVSLAKVLIKNWKRLLDSPRTTKGEREAREKAKKKEKGL
                     GSSGWKPEAGLSPPRKKEGGEPKTRRDSVDSRSSTTSSPKRPSLERSNSSRSKVETPK
                     TPSSPSTPTFAPAVCLLASCYLTGDSVRDKCVEMLSAALKAEDDFKDYGVNCDKLASE
                     IEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGTISPELIAKMTAEEMA
                     SDELRELRNAMTQEAIREHQMAKTGGTTTDLLRCSKCKKKNCTYNQVQTRSADEPMTT
                     FVLCNECGNRWKFC"
     exon            153..215
                     /gene="Tcea3"
                     /inference="alignment:Splign:2.1.0"
     exon            216..321
                     /gene="Tcea3"
                     /inference="alignment:Splign:2.1.0"
     exon            322..463
                     /gene="Tcea3"
                     /inference="alignment:Splign:2.1.0"
     exon            464..526
                     /gene="Tcea3"
                     /inference="alignment:Splign:2.1.0"
     exon            527..690
                     /gene="Tcea3"
                     /inference="alignment:Splign:2.1.0"
     exon            691..747
                     /gene="Tcea3"
                     /inference="alignment:Splign:2.1.0"
     exon            748..902
                     /gene="Tcea3"
                     /inference="alignment:Splign:2.1.0"
     exon            903..1049
                     /gene="Tcea3"
                     /inference="alignment:Splign:2.1.0"
     exon            1050..1121
                     /gene="Tcea3"
                     /inference="alignment:Splign:2.1.0"
     exon            1122..1216
                     /gene="Tcea3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtgtgtttgc ggcccgtgcc gctcgcgctt tggcgcccgc tgctgccctg agcccctaac
       61 cccaccgagc gtcgtggacc aacatgggct tggaagaaga gctgctgagg atcgccaaaa
      121 aactggagaa gatggtggcc cggaagaaga cggaaggggc cctggacctt ctgaagaaac
      181 tgaacagttg ccagatgtcc atccagctgc tacagaccac caggatcgga gtcgctgtca
      241 atggagttcg caagcactgc tcagacaagg aggtggtgtc cttggccaaa gtcctcatta
      301 aaaactggaa gcggctgctg gattccccca gaaccaccaa aggagagaga gaagcaagag
      361 aaaaagcaaa gaagaaggag aaaggactcg gctcttcagg ctggaaacca gaagcaggtc
      421 tttccccacc aaggaagaaa gaaggaggag agcccaaaac caggagagac tccgtagact
      481 ccaggtcatc caccacctcc tctccaaaaa ggccttcgct ggaaagatcc aacagcagca
      541 gatctaaagt ggaaaccccc aagaccccca gcagcccctc aactcccaca ttcgcccccg
      601 ctgtctgtct cctggcctcc tgctatctca ccggggactc tgtccgggac aagtgtgtgg
      661 agatgctgtc agccgctctg aaggcggaag atgatttcaa ggactatgga gtcaactgtg
      721 acaagctggc ctcagaaata gaagaccata tctaccaaga actcaagagc acggacatga
      781 agtaccggaa ccgtgtgcgc agccgcatca gcaacctgaa ggaccccagg aacccgggcc
      841 tgaggcggaa cgtgctcagc gggaccatct ccccagagct cattgccaag atgacagccg
      901 aggaaatggc cagtgacgag ctgagggagc tgaggaacgc catgactcaa gaggccatcc
      961 gcgagcacca gatggccaag acaggcggta ccaccactga cctcttgcgg tgtagcaagt
     1021 gcaagaagaa gaattgtacc tataaccagg tgcagacacg cagtgctgat gagcccatga
     1081 ccacctttgt cttatgcaat gaatgtggga atcgctggaa gttctgctga ctgaaccacc
     1141 tgccaggaga ggaagacgga gcaggaagca cagaccccat gacctggaac aaaataaaag
     1201 ttcaaaagat ggaaaaaaaa aaaaaaaaaa aaaaaaaaaa
//
