LOCUS       NM_057098               1151 bp    mRNA    linear   ROD 13-FEB-2025
DEFINITION  Rattus norvegicus transcription elongation factor A2 (Tcea2), mRNA.
ACCESSION   NM_057098
VERSION     NM_057098.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1151)
  AUTHORS   Kwak,H. and Lis,J.T.
  TITLE     Control of transcriptional elongation
  JOURNAL   Annu Rev Genet 47, 483-508 (2013)
   PUBMED   24050178
  REMARK    Review article
REFERENCE   2  (bases 1 to 1151)
  AUTHORS   Xu,Q., Nakanishi,T., Sekimizu,K. and Natori,S.
  TITLE     Cloning and identification of testis-specific transcription
            elongation factor S-II
  JOURNAL   J Biol Chem 269 (4), 3100-3103 (1994)
   PUBMED   8300645
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Nov 26, 2020 this sequence version replaced NM_057098.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760383,
                              SAMEA5760386 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-148               JAXUCZ010000003.1  189173826-189173973
            149-211             JAXUCZ010000003.1  189176626-189176688
            212-317             JAXUCZ010000003.1  189177004-189177109
            318-408             JAXUCZ010000003.1  189177875-189177965
            409-539             JAXUCZ010000003.1  189179262-189179392
            540-596             JAXUCZ010000003.1  189179663-189179719
            597-751             JAXUCZ010000003.1  189180076-189180230
            752-898             JAXUCZ010000003.1  189180306-189180452
            899-970             JAXUCZ010000003.1  189181139-189181210
            971-1151            JAXUCZ010000003.1  189181452-189181632
FEATURES             Location/Qualifiers
     source          1..1151
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q43"
     gene            1..1151
                     /gene="Tcea2"
                     /note="transcription elongation factor A2"
                     /db_xref="GeneID:29575"
                     /db_xref="RGD:61825"
     exon            1..148
                     /gene="Tcea2"
                     /inference="alignment:Splign:2.1.0"
     CDS             80..979
                     /gene="Tcea2"
                     /note="testis-specific S-II; transcription elongation
                     factor TFIIS.l; transcription elongation factor S-II
                     protein 2; transcription elongation factor A (SII), 2"
                     /codon_start=1
                     /product="transcription elongation factor A protein 2"
                     /protein_id="NP_476439.1"
                     /db_xref="GeneID:29575"
                     /db_xref="RGD:61825"
                     /translation="MGKEEEIARIARRLDKMVTRKNAEGAMDLLRELKNMPITLHLLQ
                     STRVGMSVNALRKQSSDEELIALAKSLIKSWKKLLDVSDGKSRDQGRGTPLPTSSSKD
                     ASGTTDLSCKKPDPPRTSSTPRITTFPQVPITCDAVRNKCREMLTLALQTDHDHVAVG
                     VSCEHLSSQIEECIFLDVGNTDMKYKNRVRSRISNLKDAKNPGLRRNVLCGAITPQQI
                     AVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCNKCRKKNCTYTQVQT
                     RSSDEPMTTYVVCNECGNRWKFC"
     exon            149..211
                     /gene="Tcea2"
                     /inference="alignment:Splign:2.1.0"
     exon            212..317
                     /gene="Tcea2"
                     /inference="alignment:Splign:2.1.0"
     exon            318..408
                     /gene="Tcea2"
                     /inference="alignment:Splign:2.1.0"
     exon            409..539
                     /gene="Tcea2"
                     /inference="alignment:Splign:2.1.0"
     exon            540..596
                     /gene="Tcea2"
                     /inference="alignment:Splign:2.1.0"
     exon            597..751
                     /gene="Tcea2"
                     /inference="alignment:Splign:2.1.0"
     exon            752..898
                     /gene="Tcea2"
                     /inference="alignment:Splign:2.1.0"
     exon            899..970
                     /gene="Tcea2"
                     /inference="alignment:Splign:2.1.0"
     exon            971..1151
                     /gene="Tcea2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggaccgcgga tctaggcggc ggcggccgag gtccggccgg gcggcgcaac cggcgcaatc
       61 cgccgccacc gaggtagtga tgggcaagga ggaggagatt gctcgtatcg cccggaggct
      121 ggacaaaatg gtgaccagga agaacgcgga gggagccatg gatttgctgc gggagctgaa
      181 gaatatgcct attacattgc acttgctcca gtccacccgt gttgggatgt ctgtcaacgc
      241 tctgcggaag cagagttcag acgaggagct cattgcactt gccaagtccc tcatcaagtc
      301 ctggaagaag ctcttggatg tttctgatgg caaatccagg gatcaaggga ggggcacacc
      361 tttgcctaca tcgtcctcaa aggatgcctc agggactacg gatctcagct gcaagaaacc
      421 agacccacct aggacctcat ccactccgag gatcaccaca tttccccaag tgcccatcac
      481 ctgtgatgct gtgcgaaaca aatgtcgtga gatgctgact ttggccctgc aaactgacca
      541 cgaccacgtg gctgttggtg tgagctgtga gcatctgtca tctcagatcg aggagtgcat
      601 cttcctggat gtgggaaaca ctgacatgaa gtacaagaac cgtgttcgga gccgaatctc
      661 taacctgaaa gatgccaaga accctggcct acgccggaat gtgttgtgtg gtgccattac
      721 accccagcag atagctgtga tgacatcaga ggagatggcc agtgacgagc tgaaggagat
      781 ccgcaaggct atgaccaagg aggccatccg agagcaccag atggcccgta caggtggcac
      841 acagaccgac ctgttcacct gcaacaagtg caggaagaag aactgcacct acacgcaggt
      901 gcagacccgt agctctgatg agcccatgac cacctatgtt gtctgcaatg agtgtgggaa
      961 tcgatggaag ttctgctgag tccttgtact gatgtagccc tggccatggc taaccctgaa
     1021 cctcctgcaa cgctcttggt ggacacagct tctctggaga taccctgcag gtggcatgcc
     1081 ccgttccagc ctgcctggtg tgcacctgcc tgccctttgc ccctcatcat taaatgtttc
     1141 ttttttgcct t
//
