LOCUS       XM_039108650            5260 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus TRPM8 channel associated factor 2C
            (Tcaf2c), mRNA.
ACCESSION   XM_039108650
VERSION     XM_039108650.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5260
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5260
                     /gene="Tcaf2c"
                     /note="TRPM8 channel associated factor 2C; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 16 ESTs, 5 long SRA reads, 5 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 107 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:100912416"
                     /db_xref="RGD:1591778"
     CDS             1044..3803
                     /gene="Tcaf2c"
                     /codon_start=1
                     /product="TRPM8 channel-associated factor 2"
                     /protein_id="XP_038964578.1"
                     /db_xref="GeneID:100912416"
                     /db_xref="RGD:1591778"
                     /translation="MATTPDAAFEALMNGVTSWDLPKEFTPNELLLIGEAAFPVMVND
                     KGQVLIAASFYGQSRLVVLSHEGYLLHAGLAPFLLNAVSWLCPSPGAPIAVHSSLASL
                     VNILGDSGVKTVVQPEPGEALGVFCIDAYNDTLTEKLVQFVKHGGGLLIGGQACNWAS
                     QQGSDKVLFSFPGNQVTSVAGVYFTDVYGDINRFKVSKKVPKIPLHIRCWEELRRDQE
                     QLLDGISMLDIRTGGVPSQLLVHGSLAFPVGLDNSFLSCFLAAARYGCGRVVLAAHEA
                     MLCAPKMEPFLLNAIRWLSRDQGKTIGVNKSLKNLNSLLLKHGVKCSLESHLTSDMGV
                     YCCVAYSDQDAKKIQEFVAEGGGLLIGGQSWWWASQNQGSSALRSFPGNVVLNPFGLS
                     ILPQTISPGCFPVLPIDIRNYHFRRALSEFQAMVNHKGGNLEKKYFGKLGVDGAGFLQ
                     IPAKGVPAYISVHRILRKMLRQAGLPAVSKNNPVSSQSCEAALLCLATELAHSGTDCS
                     QIAHNHGTQTCSSDLCSSEHPITVEINGTNTGDSDVWMSTGLYLLEGQSTEISLSEPA
                     ASAGLKVQIGCHTDNLSHARQLFRAPVVTYQCCMDRTQRSVSCLWGGLLYIIVPKGCQ
                     LGPVSVTITKAVPAPYYKLGKTSLEEWKSCMQKNLGPWGELATDSVILTVPTESLKNL
                     EDPAPLLQLWDEIMKAVAKLAAQPFPFERPERIVTDVQISNGWMHSGYPIMCHVESVQ
                     ELVSLADIRSKGLWGPIHELGHNQQRSGWEFRPHTTEATCNLWSVYVHETVLGIPRAQ
                     AHPQLKPEEREKRIKEHLQKGAPLSDWKVWTALETYLQLQEVFGWEPFMNLFAEYQCI
                     VHIPKDNESKMNLWLKLFSEKVQKNLVPFFEAWGWPIQKPVAEALACFPSWQDHPLKM
                     YIGME"
ORIGIN      
        1 tggccaagta tccatggctc cctccagtac ctgaaactaa ctggatgtca gtttacaacc
       61 attggtgggg ttccctgtca atcatgtgag actgtggagg aggtcctcca tagtgagcta
      121 ctcagaggtg ggaatagcta agttgggtgg atctccagct acactccatg gcactcaagg
      181 aagggagaca ggggagaaga gataaaggcc ctcacattgc tcactatgcc tgtaccactt
      241 acagtgtagc ctgtaaaaca atggccctct ggcctgagtg actggttcag aaagagaaaa
      301 gtctgaaggg agaactggag taagctcagc tctcagcata ccaggcttca gaagaatttg
      361 aaaagacctt gcccagacag ttgaaaggag ttggatgggg agtttccact atggcagact
      421 tgatcatttg gaagccattg tcaatgaggt aaacaaagct gtcagaatgg atgcactttc
      481 tgaaaggtca tgcaacccca actaatggac tttctagcag gtcatatgac ccttttctca
      541 gaaagaatta aacaaacagc aagtcaaccc ctacatttga ttcatcagat cctactggaa
      601 gctgcacctc cttcaaagga cctgttcctc tctgcctttt gctctgctgt tgccctggtg
      661 ttcctcttat caaaatgttc ctcccacacc atttcaggtt tcagctttaa gtttcacatg
      721 ttcctaccaa ccaggtcttt cctgtcatgc agtctaaagc agccttcccg tcgactggtc
      781 cacagttcat caacagatag taatgggaaa ttgctgcgtt tgtatttatt tataagccta
      841 cttatttatt gtctttactc ttcttatatg ttgagtcatg aaagtggaat ccttgtctgt
      901 tttgcacttc aatttatctt caaagggaga aacaaataca ttttgtggac tgaatgcatt
      961 tagttaactg cctttctcac tgcttcctca ttctgctttg accaacctga gtctctgctt
     1021 cctttgtagc aattggcaga accatggcaa caactcctga tgctgctttt gaggccctca
     1081 tgaatggagt gaccagctgg gatctcccta aagaattcac tcccaatgaa ctccttctta
     1141 ttggagaggc agccttccca gtgatggtga acgacaaggg ccaggtgctc attgctgcct
     1201 ctttctatgg ccaaagccgc ctggtggtcc tatcccatga gggctacctt ctgcatgctg
     1261 gattggctcc atttcttctc aatgcagtga gctggctctg cccctcccca ggggctccca
     1321 ttgcagtgca ttcttccttg gcatccttag ttaacatcct cggggactct ggggtaaaga
     1381 cagtggttca gcctgagcct ggagaggctc tgggagtttt ttgcattgat gcctacaatg
     1441 acaccttgac cgagaagcta gttcagtttg ttaagcatgg tgggggcttg ctcattggag
     1501 gccaggcctg caattgggcc agtcaacagg ggagtgacaa agtgctgttc agtttccctg
     1561 ggaaccaggt gacaagtgtg gctggagtgt acttcactga tgtctatggg gatataaacc
     1621 ggttcaaggt ctctaagaag gtacccaaga tccccctcca tatcaggtgt tgggaggagc
     1681 tcaggcgtga ccaggagcag cttctggatg ggatctctat gttggacatc aggactgggg
     1741 gtgtcccctc acagctgttg gtacatgggt ccctggcctt ccctgtgggc cttgataact
     1801 ccttccttag ctgcttccta gcagctgccc gctatggttg tggtcgggtg gtgttggctg
     1861 cacacgaggc catgctctgt gctcctaaaa tggaaccctt tttgctcaat gctatacgtt
     1921 ggttgtccag agaccaggga aagactattg gggtgaacaa aagtctcaag aatctgaatt
     1981 ccctattgtt gaagcatgga gtgaagtgca gcctggagtc ccatttgacc agtgatatgg
     2041 gtgtctactg ctgtgtagct tatagtgacc aggatgccaa gaaaatacag gagtttgtag
     2101 cagagggtgg ggggttgctc attggtggtc agtcctggtg gtgggcttcc cagaaccaag
     2161 gcagctctgc attgcgtagt ttccctggga atgtcgtcct caatcccttt ggcctcagca
     2221 ttttgcctca gaccatcagc ccaggctgtt tccctgtcct tcctatagac ataaggaact
     2281 accattttcg aagggctctt tctgagttcc aggctatggt gaaccacaag ggtgggaact
     2341 tggaaaagaa gtattttgga aaattgggag tagatggagc aggctttctt cagattcctg
     2401 caaagggagt tcctgcttat atatctgtgc accggatcct gaggaagatg ctacgtcagg
     2461 caggcctccc tgctgtgagc aagaataacc cggtgtccag tcagtcctgt gaggctgcac
     2521 tgctctgtct agccacagag ctggcacatt ctgggactga ttgctcccag atagctcata
     2581 accatggcac tcagacctgc tcctctgatc tctgctcctc agaacatccc attacagtgg
     2641 agatcaatgg aaccaacaca ggtgacagtg atgtctggat gagtactggg ctctacctcc
     2701 tggaaggaca aagcacagag atttctctct ctgaacctgc tgcctcggct ggcctgaagg
     2761 tgcagatcgg atgtcacact gataatctca gtcatgccag acagctgttc cgagcccctg
     2821 tggtaacgta tcagtgctgt atggacagaa cccaacggtc agtctcctgc ctctggggtg
     2881 gtctcctgta catcattgtg cccaaaggct gtcaacttgg ccctgtatct gtcaccatca
     2941 caaaggcagt gcctgcccca tactacaagc taggtaagac atcactggag gagtggaaga
     3001 gctgcatgca gaagaacctg gggccctggg gagagttggc cacagacagt gtcatcctga
     3061 cagtgccaac cgaaagcctg aagaatctgg aagatccagc tcctctgctc caactctggg
     3121 atgagattat gaaggctgtg gccaagctgg cagcccagcc cttccctttt gaaaggcctg
     3181 agagaattgt cactgatgtt cagatatcaa atggctggat gcattcagga taccccatca
     3241 tgtgccatgt ggaatctgtg caagaactag tcagtttggc agacataaga agtaagggcc
     3301 tatggggacc catccatgag ctgggccaca atcagcaacg cagtggttgg gagttccgcc
     3361 cacataccac cgaggccacc tgcaatctct ggtcagtcta tgttcatgag acagtcctgg
     3421 ggattcccag agctcaggcc caccctcaac tgaaacctga agaaagagag aagaggatca
     3481 aagaacacct tcagaaggga gcacccctga gtgactggaa ggtttggaca gcactggaga
     3541 catatctgca gctccaggag gtctttgggt gggagccatt catgaacctc tttgctgaat
     3601 accaatgcat tgttcacatc cccaaagaca atgagagcaa gatgaactta tggctgaagt
     3661 tgttctctga gaaagtgcag aagaacctgg ttcctttctt tgaagcctgg ggctggccta
     3721 tccagaagcc agtggctgaa gccctggcct gctttccttc ctggcaggat caccccttga
     3781 agatgtacat tgggatggag tagtaggggc tgtggagaca gttggggtgg gagaggtcat
     3841 tgggtagggg aaatgggtgg gataaggaag gaccacagta ctagcttcac tgtggtctag
     3901 cttgagacac tcactgctta actatttttc tctactgttt gattttcaaa tatattttgg
     3961 gcggttttaa atatcattcc atgctttctt gcaaaaacta cttgtgatag tgaacctagt
     4021 gaatgttcct ttccacatcc catcagcata tcccaaactc agggactttt tcctctgata
     4081 ctacttgtat cccttggcag cttcttggca catgaaaagc actaaaaaaa tacttgctat
     4141 atgaaagaac actaaagtgt tgtgacatag aaggaacagt cagtgcatgg tcctaagact
     4201 gtgtacagca ttttctctga gttactggga taatcttcca ccagttaata tctccttatc
     4261 gtacaggaga aaatagcatg gatattaaac aacttctgca gtcaagactg agaagagaaa
     4321 gtgtcaaatt tcacagatgt ccataagggt gataaactgt ggatcttatc ctcaacggat
     4381 tgagaatgtt aacaaaactt tgcccaaaag atacatgaaa gtttattgac ctttacttgc
     4441 tttcctgtgt tcattattga aatgtgacaa aataccaaat tggatctcta aatgttttgg
     4501 taattaatct tctctttacg ttgccagaca ttcatttgtc ttggaaggaa cctggccttg
     4561 ggaaaaaaat ttaaaccaag gaaattcatt ttccaaactg gtgatcatct tcattgtgat
     4621 gggagggaga ggtgagtaga cagataatgc tggaattggg gggttaccta agagatcaga
     4681 ccaaatccta accttgtgca caccacctct ctggaggatc tggagccctg tggggttttc
     4741 ttctcattcc tgaaaagaga tcctggctct gcctctcgtt tttatgctct tggttatctg
     4801 tgactgcaat acccacagat tatgcttgtg tacataaaaa caagactttt ttctgctcaa
     4861 aattttatag ttctgtgttt agaaatctta tttaggaaaa aaatattgaa gagtattaag
     4921 ctcagtcaaa gtctcagcat aagtggggta gggatcagga agtcccatcc ctagttggag
     4981 atctgttggg atgactgctg ggaggagagt cagctttcgt cagatatgtg gtccctgaga
     5041 ggctacccat gctgtacacc tgcacttagc gctacatata ggcagcgcta agggattcag
     5101 tgagctgtaa aagaaagcac atgagtttag gtggaaatag atatgtagga ctaggagatg
     5161 aatgagaagg acatgcatta tggttttgat aaaagcacct tatatccatg tatggaattt
     5221 tcaacgaata aaaatgaata aaaagctata tgtaaatcca
//
