LOCUS       NM_001099361            1697 bp    mRNA    linear   ROD 09-APR-2024
DEFINITION  Rattus norvegicus TATA box binding protein-like 2 (Tbpl2), mRNA.
ACCESSION   NM_001099361 XM_001055480 XM_001076920
VERSION     NM_001099361.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1697)
  AUTHORS   Gazdag,E., Rajkovic,A., Torres-Padilla,M.E. and Tora,L.
  TITLE     Analysis of TATA-binding protein 2 (TBP2) and TBP expression
            suggests different roles for the two proteins in regulation of gene
            expression during oogenesis and early mouse development
  JOURNAL   Reproduction 134 (1), 51-62 (2007)
   PUBMED   17641088
REFERENCE   2  (bases 1 to 1697)
  AUTHORS   Di Pietro,C., Ragusa,M., Duro,L., Guglielmino,M.R., Barbagallo,D.,
            Carnemolla,A., Lagana,A., Buffa,P., Angelica,R., Rinaldi,A.,
            Calafato,M.S., Milicia,I., Caserta,C., Giugno,R., Pulvirenti,A.,
            Giunta,V., Rapisarda,A., Di Pietro,V., Grillo,A., Messina,A.,
            Ferro,A., Grzeschik,K.H. and Purrello,M.
  TITLE     Genomics, evolution, and expression of TBPL2, a member of the TBP
            family
  JOURNAL   DNA Cell Biol 26 (6), 369-385 (2007)
   PUBMED   17570761
REFERENCE   3  (bases 1 to 1697)
  AUTHORS   Tanaka,Y., Nanba,Y.A., Park,K.A., Mabuchi,T., Suenaga,Y.,
            Shiraishi,S., Shimada,M., Nakadai,T. and Tamura,T.A.
  TITLE     Transcriptional repression of the mouse wee1 gene by TBP-related
            factor 2
  JOURNAL   Biochem Biophys Res Commun 352 (1), 21-28 (2007)
   PUBMED   17109819
REFERENCE   4  (bases 1 to 1697)
  AUTHORS   Persengiev,S.P., Zhu,X., Dixit,B.L., Maston,G.A., Kittler,E.L. and
            Green,M.R.
  TITLE     TRF3, a TATA-box-binding protein-related factor, is
            vertebrate-specific and widely expressed
  JOURNAL   Proc Natl Acad Sci U S A 100 (25), 14887-14891 (2003)
   PUBMED   14634207
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Nov 8, 2022 this sequence version replaced NM_001099361.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BK005774.1 [ECO:0000332]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-119               JAXUCZ010000003.1  27191547-27191665   c
            120-583             JAXUCZ010000003.1  27189656-27190119   c
            584-671             JAXUCZ010000003.1  27188746-27188833   c
            672-763             JAXUCZ010000003.1  27185817-27185908   c
            764-931             JAXUCZ010000003.1  27183732-27183899   c
            932-1026            JAXUCZ010000003.1  27173508-27173602   c
            1027-1697           JAXUCZ010000003.1  27170209-27170879   c
FEATURES             Location/Qualifiers
     source          1..1697
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3p13"
     gene            1..1697
                     /gene="Tbpl2"
                     /note="TATA box binding protein-like 2"
                     /db_xref="GeneID:680050"
                     /db_xref="RGD:1596837"
     exon            1..119
                     /gene="Tbpl2"
                     /inference="alignment:Splign:2.1.0"
     CDS             69..1103
                     /gene="Tbpl2"
                     /note="TATA box-binding protein-like protein 2; TBP-like
                     protein 2; TBP-related factor 3; TATA box-binding
                     protein-related factor 3; TBP-like 2"
                     /codon_start=1
                     /product="TATA box-binding protein-like 2"
                     /protein_id="NP_001092831.1"
                     /db_xref="GeneID:680050"
                     /db_xref="RGD:1596837"
                     /translation="MEEDMYVDIFLDPYTFQDDFPPATSQLFSPGAPLDVHPLNPSNP
                     ETVFHSHLGAVKKAPSDFSSVDLSFLPDELTQENKDRTVTGNKVTNEESFRTQDWQSQ
                     LQLPDEQGSGLNLNSNSSPDTQSCLCSHDADSNQLSSETPNSNALPVVLISSMTPMNP
                     VTECSGIVPQLQNVVSTANLACKLDLRKIALNAKNTEYNPKRFAAVIMRIREPRTTAL
                     IFSSGKVVCTGAKSEDESRLAARKYARVVQKLGFPVRFFNFKIQNMVASCDVKFPIRL
                     EILALTHRQFSSYEPELFPGLIYKMVKPQVVLLIFASGKVVLTGAKERSEIYEAFENM
                     YPILESFKKV"
     exon            120..583
                     /gene="Tbpl2"
                     /inference="alignment:Splign:2.1.0"
     exon            584..671
                     /gene="Tbpl2"
                     /inference="alignment:Splign:2.1.0"
     exon            672..763
                     /gene="Tbpl2"
                     /inference="alignment:Splign:2.1.0"
     exon            764..931
                     /gene="Tbpl2"
                     /inference="alignment:Splign:2.1.0"
     exon            932..1026
                     /gene="Tbpl2"
                     /inference="alignment:Splign:2.1.0"
     exon            1027..1697
                     /gene="Tbpl2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcgcctccca cgtgcctgga cgctgatgcc ttgcttgccc ctagctttac atagcgggct
       61 ctcccctcat ggaggaggac atgtacgtgg acattttcct ggacccttat accttccagg
      121 atgactttcc tccagctacg tctcaactat tcagcccagg agcgccttta gatgtgcacc
      181 cacttaatcc atccaatcca gagactgtat ttcattcaca tcttggtgca gtcaaaaagg
      241 cacccagtga cttttcatct gtggatctaa gcttcttacc agatgaactt acccaagaaa
      301 ataaagaccg aactgtcact ggaaacaaag tcacaaatga ggaaagcttt aggactcaag
      361 attggcaaag tcagttgcag ttgcctgatg aacaaggcag tgggctgaac ttgaatagca
      421 acagttcacc agatacccag tcatgtctgt gctctcatga tgctgactcc aaccagctct
      481 cttcagaaac accaaattcc aatgccttac ctgtggtatt gatatcatcc atgacaccaa
      541 tgaaccctgt tacagaatgt tctggaattg tgcctcaatt acagaatgta gtttccactg
      601 caaatctggc ctgtaaattg gatctgagaa aaatagcttt gaatgccaaa aacacagaat
      661 ataatccaaa gaggtttgct gcagtcataa tgaggatccg agagccaagg accacagctc
      721 ttatatttag ctctgggaaa gtggtctgta caggagccaa aagtgaagac gagtctcggc
      781 tggcagcaag aaagtatgct cgcgtggtgc agaagctggg gttccccgtc agattcttca
      841 attttaaaat tcagaacatg gttgcaagct gtgatgtgaa atttcccatc aggctggaga
      901 ttttggcact aacccatcgg cagttcagta gttatgagcc tgaactgttc cctggcctta
      961 tttataagat ggtgaaaccg caggttgtgc tgctcatctt tgcatctgga aaggttgtac
     1021 tgacaggtgc caaagagcgt tctgagatct acgaagcatt tgaaaacatg tatcctattc
     1081 tagaaagttt taagaaagtc tgagggtgtc attgggcttc tagcaatgat ttggatatgt
     1141 gcttaaacta agtacagcaa agagcaagct gattccttct atagaagctt ctcatatttt
     1201 ctagcagcca tgggcctctg ttattatgct aatagattat gttttctgtt tgatttttgt
     1261 cttgttttag aaacagggtc tgctatgtag cctaaagtgt aatttgattt attacagaat
     1321 aattctgtgt gaatagccat gattaagaaa tgaaaatttc ttgctcaaaa tgagtcttgt
     1381 atgttattta attataaata ataagaacaa gtaaacttat ttcagaattt gaaatatgtc
     1441 aagccttgct agactgagac attaagacca cactttattt attaagtata taatatatta
     1501 gtatatactt caagtgactg catatcttga tcatatctgt aatataacat ctatcaataa
     1561 aaactcatgt ttaatttttt ttttcatttc aagtatagaa aagacagaat ccagaccttt
     1621 tggtaacaga aactgtgaaa aatcagctgg ggagaaccaa taaaatatct caaaccttaa
     1681 aatcctttgt ttgaaat
//
