LOCUS       XM_039091312            1284 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus TATA-box binding protein like 1
            (Tbpl1), transcript variant X6, mRNA.
ACCESSION   XM_039091312
VERSION     XM_039091312.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039091312.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1284
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1284
                     /gene="Tbpl1"
                     /note="TATA-box binding protein like 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 mRNAs, 13 ESTs, 2 long SRA reads, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 146 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:689030"
                     /db_xref="RGD:1597456"
     CDS             219..839
                     /gene="Tbpl1"
                     /codon_start=1
                     /product="TATA box-binding protein-like 1 isoform X3"
                     /protein_id="XP_038947240.1"
                     /db_xref="GeneID:689030"
                     /db_xref="RGD:1597456"
                     /translation="METGERTRFIFILVLQLLLRVRRNQQQRCRRVLYDRPVFPRTRC
                     HLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATIWSSGKIICTGATSEEEAKFGAR
                     RLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASYEPELHPAVCY
                     RIKSLRATLQIFSTGSITVTGPNVKAVATAVEQIYPFVFESRKEIL"
ORIGIN      
        1 agagcagcga gaaccggaag tgagtggcta gcgcggatac ccggagtgcc cgggtccggc
       61 ggcactctag ctgcctcgtc ccatctctat gctcccgagc gtctagtcta tttattgtcg
      121 cgggggaagc agcggccgcc ctgtacccgg aacaacaaag cgagaaacgg agctcgagcc
      181 ttggggggct cctagcaacg ggccggggcg ggagttccat ggagactggg gagcgaaccc
      241 gtttcatctt catccttgtc ctccagcttc ttctccgcgt ccgacgcaac cagcagcagc
      301 gctgccgccg cgtcctttac gaccgccccg tcttcccacg aacaagatgc catttgaact
      361 taaggaagat tgctttggag ggagcaaatg taatttataa gcgtgatgtt gggaaagtat
      421 taatgaagct tagaaaacct agaattacag ctacaatttg gtcctcagga aaaattattt
      481 gcactggagc aacgagtgaa gaagaagcta aatttggtgc cagacgttta gcccgtagtc
      541 tgcagaaact aggttttcag gtaattttta cagattttaa ggttgtgaat gttttggcag
      601 tctgtaacat gccctttgaa atccgtttgc cagaattcac aaagaacaac agacctcatg
      661 ccagctatga acctgaactt catcctgctg tgtgctatcg gataaagtct ctaagagcta
      721 cgttacagat attttcaaca ggaagtatca cggtgacagg gcccaatgta aaggctgtgg
      781 ccacagccgt ggagcagatc tacccattcg tgtttgaaag caggaaggag attttgtaac
      841 tcagacttcg ttggttagag tctctaactg agcaccattt gaaacctgct gcacattgga
      901 ctcgaaacac aaggaaaact ggaccaacag tgactgagga cagagactcg tactcacggc
      961 tacagtgtaa gctccagtct ctttggattt tacttcaacc tttgctgtaa tataaaaagg
     1021 aagtttacaa gacatgacat tgctgctttt acaaaaggac gttctattta ttttcgcagt
     1081 gatctcatgt ccccacaggc agagctgtcg cagtgtgcac taccttacag ttgttttatt
     1141 gatgtcatta tttttccagt tggagctaat gtgtttgatt tgtgaatagt cttttacatt
     1201 tttgtatgct gaatataggc accaaagaac ctgtaaacgt tatcttttta aattgaatgt
     1261 gcacaaataa aagtttggaa aaga
//
