LOCUS       XM_039091288            1405 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus TATA-box binding protein like 1
            (Tbpl1), transcript variant X1, mRNA.
ACCESSION   XM_039091288
VERSION     XM_039091288.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039091288.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1405
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1405
                     /gene="Tbpl1"
                     /note="TATA-box binding protein like 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 11 ESTs, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 42 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:689030"
                     /db_xref="RGD:1597456"
     CDS             244..960
                     /gene="Tbpl1"
                     /codon_start=1
                     /product="TATA box-binding protein-like 1 isoform X1"
                     /protein_id="XP_038947216.1"
                     /db_xref="GeneID:689030"
                     /db_xref="RGD:1597456"
                     /translation="METGERTRFIFILVLQLLLRVRRNQQQRCRRVLYDRPVFPRTRC
                     HLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATIWSSGKIICTGATSEEEAKFGAR
                     RLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASYEPELHPAVCY
                     RIKSLRATLQIFSTGSITVTGNLDLMHTCSELHHSLLMDAALSCVGSRSSSSGPNVKA
                     VATAVEQIYPFVFESRKEIL"
ORIGIN      
        1 gagctagggg gccagggctg cgaggagagc agcgagaacc ggaagtgagt ggctagcgcg
       61 gatacccgga gtgcccgggt ccggcggcac tctagctgcc tcgtcccatc tctatgctcc
      121 cgagcgtcta gtctatttat tgtcgcgggg gaagcagcgg ccgccctgta cccggaacaa
      181 caaagcgaga aacggagctc gagccttggg gggctcctag caacgggccg gggcgggagt
      241 tccatggaga ctggggagcg aacccgtttc atcttcatcc ttgtcctcca gcttcttctc
      301 cgcgtccgac gcaaccagca gcagcgctgc cgccgcgtcc tttacgaccg ccccgtcttc
      361 ccacgaacaa gatgccattt gaacttaagg aagattgctt tggagggagc aaatgtaatt
      421 tataagcgtg atgttgggaa agtattaatg aagcttagaa aacctagaat tacagctaca
      481 atttggtcct caggaaaaat tatttgcact ggagcaacga gtgaagaaga agctaaattt
      541 ggtgccagac gtttagcccg tagtctgcag aaactaggtt ttcaggtaat ttttacagat
      601 tttaaggttg tgaatgtttt ggcagtctgt aacatgccct ttgaaatccg tttgccagaa
      661 ttcacaaaga acaacagacc tcatgccagc tatgaacctg aacttcatcc tgctgtgtgc
      721 tatcggataa agtctctaag agctacgtta cagatatttt caacaggaag tatcacggtg
      781 acaggtaacc tggacttgat gcacacctgt tccgaactgc atcactcgct tctcatggat
      841 gccgcgctgt cttgtgtggg ctcacggtca tcctcatcag ggcccaatgt aaaggctgtg
      901 gccacagccg tggagcagat ctacccattc gtgtttgaaa gcaggaagga gattttgtaa
      961 ctcagacttc gttggttaga gtctctaact gagcaccatt tgaaacctgc tgcacattgg
     1021 actcgaaaca caaggaaaac tggaccaaca gtgactgagg acagagactc gtactcacgg
     1081 ctacagtgta agctccagtc tctttggatt ttacttcaac ctttgctgta atataaaaag
     1141 gaagtttaca agacatgaca ttgctgcttt tacaaaagga cgttctattt attttcgcag
     1201 tgatctcatg tccccacagg cagagctgtc gcagtgtgca ctaccttaca gttgttttat
     1261 tgatgtcatt atttttccag ttggagctaa tgtgtttgat ttgtgaatag tcttttacat
     1321 ttttgtatgc tgaatatagg caccaaagaa cctgtaaacg ttatcttttt aaattgaatg
     1381 tgcacaaata aaagtttgga aaaga
//
