LOCUS       NM_001127201            1270 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus TATA-box binding protein like 1 (Tbpl1), mRNA.
ACCESSION   NM_001127201 XM_001056405 XM_001069243
VERSION     NM_001127201.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1270)
  AUTHORS   Andreev DE, O'Connor PB, Zhdanov AV, Dmitriev RI, Shatsky IN,
            Papkovsky DB and Baranov PV.
  TITLE     Oxygen and glucose deprivation induces widespread alterations in
            mRNA translation within 20 minutes
  JOURNAL   Genome Biol 16 (1), 90 (2015)
   PUBMED   25943107
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1270)
  AUTHORS   Wei SM, Yan ZZ and Zhou J.
  TITLE     Involvement of reactive oxygen species and TATA box-binding
            protein-related factor 2 in testicular torsion/detorsion-induced
            injury
  JOURNAL   Urology 81 (2), 466 (2013)
   PUBMED   23374846
  REMARK    GeneRIF: These findings have indicated that overproduction of
            reactive oxygen species after testicular torsion-detorsion can
            damage testicular spermatogenesis by downregulation of TRF2
            expression.
REFERENCE   3  (bases 1 to 1270)
  AUTHORS   Brancorsini S, Davidson I and Sassone-Corsi P.
  TITLE     TIPT, a male germ cell-specific partner of TRF2, is
            chromatin-associated and interacts with HP1
  JOURNAL   Cell Cycle 7 (10), 1415-1422 (2008)
   PUBMED   18418073
REFERENCE   4  (bases 1 to 1270)
  AUTHORS   Catena R, Ronfani L, Sassone-Corsi P and Davidson I.
  TITLE     Changes in intranuclear chromatin architecture induce bipolar
            nuclear localization of histone variant H1T2 in male haploid
            spermatids
  JOURNAL   Dev Biol 296 (1), 231-238 (2006)
   PUBMED   16765935
REFERENCE   5  (bases 1 to 1270)
  AUTHORS   Catena R, Argentini M, Martianov I, Parello C, Brancorsini S,
            Parvinen M, Sassone-Corsi P and Davidson I.
  TITLE     Proteolytic cleavage of ALF into alpha- and beta-subunits that form
            homologous and heterologous complexes with somatic TFIIA and TRF2
            in male germ cells
  JOURNAL   FEBS Lett 579 (16), 3401-3410 (2005)
   PUBMED   15927180
REFERENCE   6  (bases 1 to 1270)
  AUTHORS   Chong JA, Moran MM, Teichmann M, Kaczmarek JS, Roeder R and Clapham
            DE.
  TITLE     TATA-binding protein (TBP)-like factor (TLF) is a functional
            regulator of transcription: reciprocal regulation of the
            neurofibromatosis type 1 and c-fos genes by TLF/TRF2 and TBP
  JOURNAL   Mol Cell Biol 25 (7), 2632-2643 (2005)
   PUBMED   15767669
REFERENCE   7  (bases 1 to 1270)
  AUTHORS   Shultz MA, Zhang L, Gu YZ, Baker GL, Fannuchi MV, Padua AM, Gurske
            WA, Morin D, Penn SG, Jovanovich SB, Plopper CG and Buckpitt AR.
  TITLE     Gene expression analysis in response to lung toxicants: I.
            Sequencing and microarray development
  JOURNAL   Am J Respir Cell Mol Biol 30 (3), 296-310 (2004)
   PUBMED   12947022
REFERENCE   8  (bases 1 to 1270)
  AUTHORS   Martianov I, Brancorsini S, Gansmuller A, Parvinen M, Davidson I
            and Sassone-Corsi P.
  TITLE     Distinct functions of TBP and TLF/TRF2 during spermatogenesis:
            requirement of TLF for heterochromatic chromocenter formation in
            haploid round spermatids
  JOURNAL   Development 129 (4), 945-955 (2002)
   PUBMED   11861477
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BF414163.1, CF109177.1 and AW434020.1.
            
            On or before May 9, 2008 this sequence version replaced
            XM_001056405.1, XM_001069243.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ213420.1, FQ234587.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-335               BF414163.1         1-335
            336-648             CF109177.1         28-340
            649-1270            AW434020.1         1-622               c
FEATURES             Location/Qualifiers
     source          1..1270
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="Sprague-Dawley"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1p12"
     gene            1..1270
                     /gene="Tbpl1"
                     /note="TATA-box binding protein like 1"
                     /db_xref="GeneID:689030"
                     /db_xref="RGD:1597456"
     exon            1..209
                     /gene="Tbpl1"
                     /inference="alignment:Splign:2.1.0"
     exon            210..388
                     /gene="Tbpl1"
                     /inference="alignment:Splign:2.1.0"
     CDS             254..814
                     /gene="Tbpl1"
                     /note="TATA box-binding protein-like protein 1; TBP-like
                     1"
                     /codon_start=1
                     /product="TATA box-binding protein-like 1"
                     /protein_id="NP_001120673.1"
                     /db_xref="GeneID:689030"
                     /db_xref="RGD:1597456"
                     /translation="MDADSDVALDILITNVVCVFRTRCHLNLRKIALEGANVIYKRDV
                     GKVLMKLRKPRITATIWSSGKIICTGATSEEEAKFGARRLARSLQKLGFQVIFTDFKV
                     VNVLAVCNMPFEIRLPEFTKNNRPHASYEPELHPAVCYRIKSLRATLQIFSTGSITVT
                     GPNVKAVATAVEQIYPFVFESRKEIL"
     exon            389..471
                     /gene="Tbpl1"
                     /inference="alignment:Splign:2.1.0"
     exon            472..535
                     /gene="Tbpl1"
                     /inference="alignment:Splign:2.1.0"
     exon            536..639
                     /gene="Tbpl1"
                     /inference="alignment:Splign:2.1.0"
     exon            640..734
                     /gene="Tbpl1"
                     /inference="alignment:Splign:2.1.0"
     exon            735..1259
                     /gene="Tbpl1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcggccgccc tgtacccgga acaacaaagc gagaaacgga gctcgagcct tggggggctc
       61 ctagcaacgg gccggggcgg gagttccatg gagactgggg agcgaacccg tttcatcttc
      121 atccttgtcc tccagcttct tctccgcgtc cgacgcaacc agcagcagcg ctgccgccgc
      181 gtcctttacg accgccccgt cttcccacgg atgtgatctt cgtggtggga aaccaagttt
      241 ctaaactacc ccaatggatg cagacagtga tgttgcattg gacattttaa ttacaaatgt
      301 agtctgtgtt tttagaacaa gatgccattt gaacttaagg aagattgctt tggagggagc
      361 aaatgtaatt tataagcgtg atgttgggaa agtattaatg aagcttagaa aacctagaat
      421 tacagctaca atttggtcct caggaaaaat tatttgcact ggagcaacga gtgaagaaga
      481 agctaaattt ggtgccagac gtttagcccg tagtctgcag aaactaggtt ttcaggtaat
      541 ttttacagat tttaaggttg tgaatgtttt ggcagtctgt aacatgccct ttgaaatccg
      601 tttgccagaa ttcacaaaga acaacagacc tcatgccagc tatgaacctg aacttcatcc
      661 tgctgtgtgc tatcggataa agtctctaag agctacgtta cagatatttt caacaggaag
      721 tatcacggtg acagggccca atgtaaaggc tgtggccaca gccgtggagc agatctaccc
      781 attcgtgttt gaaagcagga aggagatttt gtaactcaga cttcgttggt tagagtctct
      841 aactgagcac catttgaaac ctgctgcaca ttggactcga aacacaagga aaactggacc
      901 aacagtgact gaggacagag actcgtactc acggctacag tgtaagctcc agtctctttg
      961 gattttactt caacctttgc tgtaatataa aaaggaagtt tacaagacat gacattgctg
     1021 cttttacaaa aggacgttct atttattttc gcagtgatct catgtcccca caggcagagc
     1081 tgtcgcagtg tgcactacct tacagttgtt ttattgatgt cattattttt ccagttggag
     1141 ctaatgtgtt tgatttgtga atagtctttt acatttttgt atgctgaata taggcaccaa
     1201 agaacctgta aacgttatct ttttaaattg aatgtgcaca aataaaagtt tggaaaagaa
     1261 aaaaaaaaaa
//
