LOCUS       XM_006227980            1843 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus TATA box binding protein (Tbp),
            transcript variant X1, mRNA.
ACCESSION   XM_006227980
VERSION     XM_006227980.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006227980.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006227980.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1843
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1843
                     /gene="Tbp"
                     /gene_synonym="TFIID"
                     /note="TATA box binding protein; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 28
                     ESTs, 6 long SRA reads, 33 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 234 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:117526"
                     /db_xref="RGD:67398"
     CDS             239..1195
                     /gene="Tbp"
                     /gene_synonym="TFIID"
                     /codon_start=1
                     /product="TATA-box-binding protein isoform X1"
                     /protein_id="XP_006228042.1"
                     /db_xref="GeneID:117526"
                     /db_xref="RGD:67398"
                     /translation="MDQNNSLPPYAQGLASPQGAMTPGIPIFSPMMPYGTGLTPQPVQ
                     NTNSLSILEEQQRQQQQQQQQQQQQQQQAVATAAASVQQSTSQQPTQGASGQTPQLFH
                     SQTLTTAPLPGTTPLYPSPMTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLK
                     TIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYAR
                     VVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIK
                     PRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKTT"
ORIGIN      
        1 caactggcgg aagtgacggc atcagatgtg cgtcaggcgt tcggtggggt cgagtccggt
       61 agcggtggcg ggtatctgct ggcggtttgg ctaggtttct gcggtcgcgt cattttctcc
      121 gcagtgccca gcatcactgt ttcatggtgc gtgacgataa cccagaaagt cgaagacgtt
      181 tctaaggaga taagaggatg ctctaggaaa aatctgagta ccgaagaaag tgagagtcat
      241 ggaccagaac aacagccttc caccttatgc tcagggcttg gcctccccac agggtgccat
      301 gactcctgga attcccatct tcagtccaat gatgccttac ggcacagggc ttactccaca
      361 gcctgttcag aacaccaata gtttatctat tttggaagag caacaaagac agcagcagca
      421 gcagcagcag cagcaacagc agcagcaaca gcaggcagta gcaactgcag cagcctcagt
      481 acagcaatca acatctcagc agcccacaca gggtgcctca ggccagaccc cacaactctt
      541 ccattctcaa actctaacca cagcaccatt gccaggcacc acccccttgt atccttcacc
      601 aatgactcct atgaccccta tcactcctgc cacaccagcc tctgagagct ctgggattgt
      661 accacagctc caaaatattg tatccaccgt gaatcttggc tgtaaacttg acctaaagac
      721 cattgcactt cgtgccagaa atgctgaata taatcccaag cggtttgctg cagtcatcat
      781 gagaataaga gagccacgaa caactgcgtt gatcttcagt tctgggaaaa tggtgtgcac
      841 aggagccaag agtgaagaac aatccagact agcagcaaga aaatacgcta gagttgtgca
      901 gaagctgggc ttcccagcta agttcttaga cttcaagatc cagaacatgg tggggagctg
      961 tgatgtgaag ttccccataa ggctggaagg ccttgtgttg acccaccagc agttcagtag
     1021 ctatgagcca gaattatttc ctggattaat ctacagaatg atcaaaccca gaattgttct
     1081 ccttattttt gtttctggaa aagttgtatt aacaggtgct aaagttagag cagagattta
     1141 tgaagcattt gaaaacatct accccatctt aaagggattc aggaagacca catagttgtc
     1201 tgccatggac tcctgtctcc cctacccacg tgtttttttt tttaaaacca gtcagttttg
     1261 gtaccactga aggtacagtt gtgaggacac tcagttacag gtggcagcat gaagtgacac
     1321 tgtgtgtcct actgcaggat actagaaagg ttccctcctc tgcactgaga tcaccctgca
     1381 gcatcactgt gagttgcttg ctctgtgctg ctacttgggc ggcactgccc atttatttat
     1441 atttagattg taaacactgc tgctggtgat tgttggttta agggacagaa cttttaagtg
     1501 ttcaagccac ctgtacaatt ggacttttta ttttaacctt tcccacacaa gcaagttttt
     1561 atatttctac cagaaaagta aaaatctttt ttaaaagtgt tgtttttcta gtttgtaact
     1621 cttaggagtt ctttttgtgc cagatacatt ccgccttccc agtattgcag gactgaatag
     1681 tggtattcat caaaacaaat gactgtacat acttttcttt cctgagtact ctgcacaaaa
     1741 gtgcagctgt aaattgttag atttttgtta taaatgatac cttgtaagtc atgtgatcat
     1801 actgtcaaag aaatttattt tagatataat gcctgagacc att
//
