LOCUS       NM_001014089            1536 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus tubulin folding cofactor E-like (Tbcel), mRNA.
ACCESSION   NM_001014089 XM_236125
VERSION     NM_001014089.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1536)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1536)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
REFERENCE   3  (bases 1 to 1536)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            On Nov 27, 2020 this sequence version replaced NM_001014089.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC087163.1, SRR26643429.29829.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760389 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-202               JAXUCZ010000008.1  51751359-51751560   c
            203-352             JAXUCZ010000008.1  51731713-51731862   c
            353-492             JAXUCZ010000008.1  51730065-51730204   c
            493-674             JAXUCZ010000008.1  51724633-51724814   c
            675-931             JAXUCZ010000008.1  51723037-51723293   c
            932-1058            JAXUCZ010000008.1  51719163-51719289   c
            1059-1175           JAXUCZ010000008.1  51717362-51717478   c
            1176-1536           JAXUCZ010000008.1  51695889-51696249   c
FEATURES             Location/Qualifiers
     source          1..1536
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q22"
     gene            1..1536
                     /gene="Tbcel"
                     /gene_synonym="Lrrc35; RGD1308880"
                     /note="tubulin folding cofactor E-like"
                     /db_xref="GeneID:315591"
                     /db_xref="RGD:1308880"
     exon            1..202
                     /gene="Tbcel"
                     /gene_synonym="Lrrc35; RGD1308880"
                     /inference="alignment:Splign:2.1.0"
     exon            203..352
                     /gene="Tbcel"
                     /gene_synonym="Lrrc35; RGD1308880"
                     /inference="alignment:Splign:2.1.0"
     CDS             220..1494
                     /gene="Tbcel"
                     /gene_synonym="Lrrc35; RGD1308880"
                     /note="leucine-rich repeat-containing protein 35; leucine
                     rich repeat containing 35"
                     /codon_start=1
                     /product="tubulin-specific chaperone cofactor E-like
                     protein"
                     /protein_id="NP_001014111.1"
                     /db_xref="GeneID:315591"
                     /db_xref="RGD:1308880"
                     /translation="MDQPSGRSFMQVLCEKYSPENFPYRRGPGMGVHVPATPQGSPMK
                     DRLNLPSVLVLNSCGITCAGDEREIAAFCAHVSELDLSDNKLQDWHEVSKIVSNVPQL
                     EFLNLSSNPLSLSVLERTCAGSFSGVRKLVLNNSKASWETVHTILQELPDLEELFLCL
                     NDYETVSCPSVCCHSLKLLHITDNNLQEWTEIRKLGVMFPSLDTLVLANNHVNAIEEP
                     ADSLARLFPNLRSISLHKSGLQSWEDIDKLNSFPKLEEVRLLGIPLLQPYTTEERRKL
                     VVARLPSVSKLNGSVVTDGEREDSERFFIRYYVDVPQEEVPFRYHELITKYGKLEPLA
                     EVDLRPQSSAKVEVHFNDQVEEVSIRLDQTVAELKRQLKTLVQLPTSSMLLYYFDHEA
                     PFGPEEMKYSSRALHSFGIRDGDKIFVESKTK"
     exon            353..492
                     /gene="Tbcel"
                     /gene_synonym="Lrrc35; RGD1308880"
                     /inference="alignment:Splign:2.1.0"
     exon            493..674
                     /gene="Tbcel"
                     /gene_synonym="Lrrc35; RGD1308880"
                     /inference="alignment:Splign:2.1.0"
     exon            675..931
                     /gene="Tbcel"
                     /gene_synonym="Lrrc35; RGD1308880"
                     /inference="alignment:Splign:2.1.0"
     exon            932..1058
                     /gene="Tbcel"
                     /gene_synonym="Lrrc35; RGD1308880"
                     /inference="alignment:Splign:2.1.0"
     exon            1059..1175
                     /gene="Tbcel"
                     /gene_synonym="Lrrc35; RGD1308880"
                     /inference="alignment:Splign:2.1.0"
     exon            1176..1536
                     /gene="Tbcel"
                     /gene_synonym="Lrrc35; RGD1308880"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcaggacact gggctccagc ggccggagag ggggtcgagg tgaagcggag ctggtccggg
       61 gccggcctgg aacaggccgg aagccgagcg gaggcgacgg cggtggccgg gcgggcggag
      121 gcgcagcccg aggagccgcc gcctcccggg ccgaggggtg agtgtagccc ggccgccgct
      181 ccgctggggc tggaggcccg agacttttca gaaaagaaga tggaccagcc tagtgggaga
      241 agtttcatgc aagtattgtg tgaaaagtac agtcctgaaa acttccctta ccgccgtggt
      301 cctgggatgg gagtccatgt cccagccact cctcagggct ctcctatgaa agatcgcctc
      361 aacctcccaa gcgtgctcgt gctgaacagc tgcgggatta cctgtgcggg agacgaaaga
      421 gaaatcgcag ccttctgcgc tcacgtgtca gagctcgatc tttctgacaa caagctccaa
      481 gactggcatg aggtcagtaa gattgtgtca aacgttcctc aactggagtt tctcaacctg
      541 agttccaatc ctctgagttt gtcagtttta gaaagaacat gcgctgggtc cttctctggg
      601 gttcgcaaac ttgtcctcaa caacagcaaa gcatcatggg aaacagtgca cacaatactg
      661 caggagttgc cagatttgga ggagctcttc ctgtgcctta atgactatga aacagtgtct
      721 tgtccttctg tttgctgtca ttcccttaag ctcctacaca taacagacaa taacctccaa
      781 gagtggactg aaatccgaaa gctgggtgta atgttccctt cgctggatac cctggtcctg
      841 gccaacaatc acgtgaatgc catcgaggag cctgctgact ccctggctag gttgttccct
      901 aatctgcggt ccatcagcct ccacaagtca ggtttgcagt cctgggaaga cattgacaaa
      961 ctcaattcat tccccaaact cgaagaagtg agattgttag gaatccctct cctgcagcca
     1021 tataccaccg aggagcgcag gaaattggtg gtagccagat tgccctccgt ttccaagctc
     1081 aatggcagtg ttgtgacgga tggtgagcgc gaggattctg agaggttctt catccggtac
     1141 tatgtggatg ttccccagga ggaagtgcca ttcaggtatc atgagctcat tacaaagtat
     1201 gggaaactgg agcctttggc agaagtggac ctgagacccc agagcagtgc gaaagtcgaa
     1261 gtccacttca acgaccaggt ggaggaagtg agcatccgtc tggaccagac ggtggcggag
     1321 ctgaagagac agctgaagac tctggtgcag ctgcccacga gcagcatgct cctctactac
     1381 tttgaccacg aggccccgtt tggcccggag gagatgaagt acagctcgcg agctctgcac
     1441 tctttcggca ttagggatgg agacaaaatt tttgtggaat caaaaacaaa ataacctcta
     1501 ccagccttgt aaaaactcac ataaggactt cctgca
//
