LOCUS       XM_006247864            3716 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus tubulin folding cofactor D (Tbcd),
            transcript variant X4, mRNA.
ACCESSION   XM_006247864
VERSION     XM_006247864.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006247864.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006247864.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3716
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3716
                     /gene="Tbcd"
                     /note="tubulin folding cofactor D; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 32 ESTs, 3 long SRA reads, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 100 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:100361417"
                     /db_xref="RGD:2320148"
     CDS             1..3429
                     /gene="Tbcd"
                     /codon_start=1
                     /product="tubulin-specific chaperone D isoform X4"
                     /protein_id="XP_006247926.1"
                     /db_xref="GeneID:100361417"
                     /db_xref="RGD:2320148"
                     /translation="MVLSNEPAASAAEEEVEDDALVRASTLEAFGESAETRALLRSLP
                     AVHRERAAREVAEERFRVIMDKYQEQPHLLDPHLEWMMNSLLDIVQDETSLPDLVHLA
                     FKFLYIITKVRGYKVFLRLFPHEVADVQPVLDMFTGQNPKDHETWETRYMLLLWLSVT
                     CLIPFDFSRLDGNLPTQSGETRMPIMDRILQIAQSYLVVSDKARDAAAVLVSKFITRP
                     DVKQRKMASFLDWSLCTLAHSSFQTIDGVITMDGMLQALAQIFKHGKREDCLPYANTV
                     LQCLDGCRLPESSHTLLRKLGVKLVQRLGLTFLKPKVATWRYQRGCRSLAANLQLRAP
                     GKSEQKLLSDSLTSDGDEDYDVPEGVETVIEQLLVGLKDKDTIVRWSAAKGIGRMAGR
                     LPRELADDVVGSVLDCFSFQETDKAWHGGCLALAELGRRGLLLPSRLSEVVTVILKAL
                     TYDEKRGACSVGANVRDAACYVCWAFARAYEPQELTPFVTAISSALVIAAVFDRNVNC
                     RRAASAAFQENVGRQGTFPHGIDILTTADYFAVGNISNCFLIISVFIAGFQEYTKPMI
                     DHLVSMKINHWDGAIRELSAKALHNLTSLVPEYMATHVFPALLLMTQSPDLHTRHGAI
                     LACAEVTYALYELAAQSNRLVTDYLDEKAVQSLKQIHQQLCDRHLYRGLGGELMRQAV
                     CILIEKLSLSRMPFKGDTVIEGWQWLINDTLRSLHLVSSHSREQIKEVAVSALAAVCN
                     EYYKKEPGEAGSTITEELIPQYLAELRSPEEMTRCGFSSALGALPCFLLRGHLQQVLS
                     GLRRVTCTTSPMDVSFAEARRDGLKAISRICQTVGVNTQGPPDEVICQENISEVYAAL
                     LGCMSDYTTDSRGDVGAWVREASMTSLMDLMLLLAQTEPVLIEAHICERVMCCVAQQA
                     SEKIDRFRAHAARVFLTLLHFDSPPIPHVPHRKELESLFPRSDVATVNWNAPSQAFPL
                     ITQLLGLPTYRYHVLLGLAVSVGGLTESTVRHSTQSLFEYMKGIQKDAQVLESFSETL
                     LKVFEDNLLNDRVSVSLLKMLDQLLANGCFDIFTAEENHPFCVKLLTLCKEEIKKSKD
                     IQKLRSSIAVLCGMVQFSGDVRKKVLLQLFLLLGHPFPVGLRASRCKRTAESPV"
ORIGIN      
        1 atggtactga gcaacgagcc ggctgcgagc gccgcggagg aggaggtgga ggatgatgcg
       61 cttgtccgcg cctccaccct ggaagcgttc ggcgagagtg cggagacccg cgcgctgctc
      121 cgcagcttgc cggcggtgca ccgcgagcgc gcggcccggg aggtggcgga ggagcggttc
      181 cgcgtaatta tggacaaata ccaggagcag ccccacctcc tggacccaca cctcgagtgg
      241 atgatgaact cactgttgga catagtacag gatgagacat ctctgcccga ccttgtacat
      301 ctggctttta aatttctgta tatcatcacc aaggttcgtg gatataaagt atttctgcgt
      361 ctgtttcccc atgaagtagc tgatgttcag cctgtgttag atatgttcac aggacagaac
      421 cctaaagacc atgagacatg ggaaactcgc tacatgcttt tactgtggct gtctgtgacc
      481 tgcttgatcc cttttgattt ttcacgcctt gatgggaacc tgcccactca atctggagaa
      541 acacggatgc ccataatgga ccgaattctg caaatagcac agtcttactt ggtggtcagt
      601 gacaaggcgc gagatgcggc tgctgtcctt gtgtccaagt ttatcacacg tcctgatgtc
      661 aagcagagaa agatggccag ctttctggac tggagccttt gtaccttggc ccactcttcc
      721 ttccagacca ttgacggtgt cattaccatg gatgggatgt tgcaggccct ggctcaaata
      781 tttaagcatg gaaaacgtga agactgtcta ccctatgcca acactgtgct ccagtgcctt
      841 gatggatgta gactccctga gagcagtcac accttactgc ggaagcttgg tgtgaagctt
      901 gtccagaggc tggggctgac tttcctgaag ccaaaggtgg ccacgtggag gtatcagcgt
      961 ggctgtcggt ctttggctgc caacctgcag ctccgtgctc cgggtaagag tgaacagaag
     1021 ctgctgtctg atagtttgac ctctgatggt gatgaagact atgatgtccc agagggggtg
     1081 gaaactgtga tagagcaact gctggttggg ctgaaggaca aggacacgat agtgcggtgg
     1141 tctgcagcta aaggaattgg taggatggct ggaaggcttc ccagagagct ggcagatgat
     1201 gtggtggggt ccgtgttgga ctgtttcagc tttcaggaga cagataaggc atggcatggt
     1261 ggatgtctgg cactggcaga gctgggtaga cgaggcctgt tgctgccatc gagactctca
     1321 gaggttgtca cagtgatcct gaaggccctt acctacgatg agaagcgggg tgcctgcagc
     1381 gtgggggcca acgtcaggga tgctgcctgc tatgtgtgct gggcttttgc acgtgcctac
     1441 gagcctcagg agttgacacc tttcgtgact gccatttcaa gtgccctggt cattgctgct
     1501 gtatttgacc gaaacgtgaa ctgcagaaga gcagcctctg ctgccttcca ggagaacgtg
     1561 gggagacagg gtacttttcc tcatggaatt gatattttga ctacagcaga ctattttgca
     1621 gttggtaaca tttctaactg tttcctgatt ataagcgtgt ttattgctgg cttccaggaa
     1681 tacaccaagc caatgatcga ccacctggtc tccatgaaaa tcaaccactg ggatggggcc
     1741 atccgagaac tgtctgcaaa ggcactgcac aacctgactt cactagtacc cgagtacatg
     1801 gccactcacg tattcccagc actactgctg atgacacaga gtccagatct acacacgaga
     1861 catggtgcca tccttgcctg tgcagaggtc acctatgccc tgtacgagct ggccgcacag
     1921 agtaacaggc ttgtcacaga ctatctggat gagaaggcag tgcaaagcct gaagcagatc
     1981 caccagcagc tttgtgatcg ccatctctac cggggtctgg gaggagagct tatgagacaa
     2041 gcagtgtgca tcttaataga gaaattgtca ctttccagaa tgccctttaa aggtgacacc
     2101 gttattgagg gatggcagtg gctgataaat gacactctca ggagccttca ccttgtttca
     2161 agccattcca gagaacagat caaggaggtg gctgtctctg ccctggctgc cgtctgcaat
     2221 gaatactaca agaaggagcc tggggaggca ggctctacca tcacagagga gctgattcca
     2281 cagtaccttg ctgaactccg aagcccagag gagatgaccc gttgtggctt ttcctcagcc
     2341 ttgggtgccc tcccgtgttt ccttctcagg ggccatctgc agcaggttct ctcaggtctg
     2401 agaagagtca cctgtactac ttctcccatg gatgtgagct ttgctgaggc caggagagac
     2461 ggtttgaaag caatctcgag aatttgccag acagttggtg tgaacacaca gggacctcca
     2521 gatgaagtca tatgccaaga gaacatctct gaggtttatg ctgcattgct gggctgcatg
     2581 agtgattaca ccacagacag cagaggcgat gtgggagcct gggttcgtga ggcttccatg
     2641 accagcctca tggatttgat gcttttgctg gcacagactg agccagtgct gattgaggcc
     2701 cacatctgtg agcgtgtcat gtgttgcgtt gcccagcagg caagtgagaa gattgatcgg
     2761 ttccgtgctc atgctgcccg ggtattcctg actctcttgc acttcgacag ccctcccatt
     2821 ccccatgttc cccaccgcaa ggaactggaa agtctgtttc ccaggtctga tgtggccact
     2881 gtgaactgga atgcaccttc acaggccttc cctcttatca cccagctctt gggactgcct
     2941 acctatagat accatgtcct gctggggctg gccgtgtccg tgggtggctt gacagagtct
     3001 acggtcaggc attctacaca gagcctcttc gagtacatga aggggattca gaaggatgct
     3061 caggtcctgg agagcttcag tgagaccctc ctaaaggtct ttgaggacaa cctcttgaat
     3121 gacagagtgt ctgtatcgct gctgaaaatg ttggaccagc tgttggccaa tgggtgcttt
     3181 gacatcttta ctgccgagga gaaccacccc ttttgtgtga agttgctcac actttgtaag
     3241 gaagaaatca agaagtcaaa agacatccag aaacttcggt caagcattgc agtgctctgt
     3301 gggatggtgc agttcagtgg tgatgtgaga aagaaggttc ttctgcagct cttcctcctc
     3361 cttggccacc cttttcctgt gggactcaga gcttcccgtt gtaagaggac agcggaatca
     3421 cctgtgtgac ctccttggtg tgcccagacc ccaactggtt ccaaagcctg ttccaggaag
     3481 ctgagccttg cccgcctagc tgggatgctt tgccctgagg ctccacaaca ggctttacca
     3541 tcatggaaac ttggtgccac agacttctga gaaaggtagc acctgctgct agatggattg
     3601 ggaggccatc cccagagagc agcaattcct catggatgct gtgctctggt gacctggact
     3661 gcccatactt ttgctgtcac acagatgtgc ttctcattaa atcatgtatc acacag
//
