LOCUS       NM_001394243            4493 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus TBC1 domain family member 9B (Tbc1d9b),
            transcript variant 1, mRNA.
ACCESSION   NM_001394243 XM_006246291
VERSION     NM_001394243.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4493)
  AUTHORS   Yoshimura,S., Egerer,J., Fuchs,E., Haas,A.K. and Barr,F.A.
  TITLE     Functional dissection of Rab GTPases involved in primary cilium
            formation
  JOURNAL   J Cell Biol 178 (3), 363-369 (2007)
   PUBMED   17646400
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On Apr 8, 2021 this sequence version replaced XM_006246291.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643298.60082.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760386, SAMEA5760393
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-211               JAXUCZ010000010.1  34961012-34961222
            212-322             JAXUCZ010000010.1  34965650-34965760
            323-441             JAXUCZ010000010.1  34970642-34970760
            442-670             JAXUCZ010000010.1  34974612-34974840
            671-929             JAXUCZ010000010.1  34975649-34975907
            930-1137            JAXUCZ010000010.1  34977091-34977298
            1138-1350           JAXUCZ010000010.1  34978762-34978974
            1351-1512           JAXUCZ010000010.1  34980307-34980468
            1513-1663           JAXUCZ010000010.1  34980907-34981057
            1664-1878           JAXUCZ010000010.1  34981574-34981788
            1879-1996           JAXUCZ010000010.1  34983987-34984104
            1997-2282           JAXUCZ010000010.1  34985253-34985538
            2283-2412           JAXUCZ010000010.1  34986963-34987092
            2413-2511           JAXUCZ010000010.1  34987183-34987281
            2512-2580           JAXUCZ010000010.1  34987992-34988060
            2581-2821           JAXUCZ010000010.1  34989786-34990026
            2822-2887           JAXUCZ010000010.1  34990387-34990452
            2888-2959           JAXUCZ010000010.1  34992021-34992092
            2960-3010           JAXUCZ010000010.1  34992358-34992408
            3011-3067           JAXUCZ010000010.1  34994530-34994586
            3068-3174           JAXUCZ010000010.1  34994991-34995097
            3175-4493           JAXUCZ010000010.1  34996909-34998227
FEATURES             Location/Qualifiers
     source          1..4493
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q22"
     gene            1..4493
                     /gene="Tbc1d9b"
                     /gene_synonym="RGD1310147"
                     /note="TBC1 domain family member 9B"
                     /db_xref="GeneID:360520"
                     /db_xref="RGD:1310147"
     exon            1..211
                     /gene="Tbc1d9b"
                     /gene_synonym="RGD1310147"
                     /inference="alignment:Splign:2.1.0"
     CDS             94..3885
                     /gene="Tbc1d9b"
                     /gene_synonym="RGD1310147"
                     /note="isoform 1 is encoded by transcript variant 1;
                     BUB2-like protein 1; vascular Rab-GAP/TBC-containing; TBC1
                     domain family, member 9B (with GRAM domain)"
                     /codon_start=1
                     /product="TBC1 domain family member 9B isoform 1"
                     /protein_id="NP_001381172.1"
                     /db_xref="GeneID:360520"
                     /db_xref="RGD:1310147"
                     /translation="MWLGPEEVLVANALWVTERANPFFVLQRRRGHGKGGGLTGLLVG
                     TLDVVLDSSARVAPYRILHQTQDSQVYWTVACGSSRKEITKHWEWLENNLLQTLSIFD
                     NEEDITTFVKGKIHGIIAEENKNLQPQGDEDPGKFKEAELKMRKQFGMPEGEKLVNYY
                     SCSFWKGRVPRQGWLYLTVNHLCFYSFLLGKEVSLVVQWVDVTRLEKNATLLFPESIR
                     VDTRDQELFFSMFLNIGETFKLMEQLANLAMRQLLDSEGFLEDKALPRPIRPHKNISA
                     LKRDLDARAKNECYRATFRLPKDERLDGHTGCTLWTPFNKLHIPGQMFISYNYICFAS
                     KEEDACRLIIPLREVTIVEKADSSSVLPSPLSISTKSKMTFLFANLKDRDFLVQRISD
                     FLQKTPSKQTGSIAGGTKASVPDPAPESLPTPQEASEPPTSPTSPLSSPLSFSTQEIP
                     TTSQGLLKVFQKNSPMEDLGAKGAKEKMKEESWNIHFFEYGRGVCMYRTAKTRELVLK
                     GIPESLRGELWLLFSGAWNEMVTHPGYYAELVEKSMGKYSLATEEIERDLHRSMPEHP
                     AFQNELGIAALRRVLTAYAFRNPTIGYCQAMNIVTSVLLLYGSEEEAFWLLVALCERM
                     LPDYYNTRVVGALVDQGIFEELTRDVLPRLSEKMQELGVISSISLSWFLTLFLSVMPF
                     ESAVVIVDCFFYEGIKVILQVALAVLDANMEQLLDCSDEGEAMTVLGRYLDNVVNKQS
                     ISPPIPHLHALLTSGDDPPAEVDIFDLLKVSYEKFSSLRADDIEQMRFKQRLKVIQSL
                     EDTAKRSVVRAIPGDIGFSIEELEDLYMVFKAKHLASQYWGGNRSAAIHRDPSLPYLE
                     QYRIDASQFRELFASLTPWACGSHTPVLAGRMFRLLDQNKDSLINFKEFVTGMSGMYH
                     GDLTEKLKALYKLHLPPALIPEEAESALEAAHYFPEDSSSEASPLASDLDLFLPWEAQ
                     AGLQEQQEGRGSEDIQERREEKETSPPDYRHYLRIWAKEKEAQKETIKDLPKMNQEQF
                     IELCKTLYNMFSEDPLEQDLYHAIATVASLLLRIGEVGKKFSALTTKKPRDGAHSGDH
                     NSATEEDEPPISKLHQDPARECQPPAAGDPQAKASGDMHLGKALQDSHVIVEGGSGEG
                     QGSPSLLLSDDETKDDMSMSSYSVVSTGSLPCEDLTEDTVLVGGEACSPTATSRMGGT
                     VDMDWCISFEQILASILTESVLVNFFEKRVDIGLKIKDQKKVERQFSTSSDHEPPGVL
                     G"
     exon            212..322
                     /gene="Tbc1d9b"
                     /gene_synonym="RGD1310147"
                     /inference="alignment:Splign:2.1.0"
     exon            323..441
                     /gene="Tbc1d9b"
                     /gene_synonym="RGD1310147"
                     /inference="alignment:Splign:2.1.0"
     exon            442..670
                     /gene="Tbc1d9b"
                     /gene_synonym="RGD1310147"
                     /inference="alignment:Splign:2.1.0"
     exon            671..929
                     /gene="Tbc1d9b"
                     /gene_synonym="RGD1310147"
                     /inference="alignment:Splign:2.1.0"
     exon            930..1137
                     /gene="Tbc1d9b"
                     /gene_synonym="RGD1310147"
                     /inference="alignment:Splign:2.1.0"
     exon            1138..1350
                     /gene="Tbc1d9b"
                     /gene_synonym="RGD1310147"
                     /inference="alignment:Splign:2.1.0"
     exon            1351..1512
                     /gene="Tbc1d9b"
                     /gene_synonym="RGD1310147"
                     /inference="alignment:Splign:2.1.0"
     exon            1513..1663
                     /gene="Tbc1d9b"
                     /gene_synonym="RGD1310147"
                     /inference="alignment:Splign:2.1.0"
     exon            1664..1878
                     /gene="Tbc1d9b"
                     /gene_synonym="RGD1310147"
                     /inference="alignment:Splign:2.1.0"
     exon            1879..1996
                     /gene="Tbc1d9b"
                     /gene_synonym="RGD1310147"
                     /inference="alignment:Splign:2.1.0"
     exon            1997..2282
                     /gene="Tbc1d9b"
                     /gene_synonym="RGD1310147"
                     /inference="alignment:Splign:2.1.0"
     exon            2283..2412
                     /gene="Tbc1d9b"
                     /gene_synonym="RGD1310147"
                     /inference="alignment:Splign:2.1.0"
     exon            2413..2511
                     /gene="Tbc1d9b"
                     /gene_synonym="RGD1310147"
                     /inference="alignment:Splign:2.1.0"
     exon            2512..2580
                     /gene="Tbc1d9b"
                     /gene_synonym="RGD1310147"
                     /inference="alignment:Splign:2.1.0"
     exon            2581..2821
                     /gene="Tbc1d9b"
                     /gene_synonym="RGD1310147"
                     /inference="alignment:Splign:2.1.0"
     exon            2822..2887
                     /gene="Tbc1d9b"
                     /gene_synonym="RGD1310147"
                     /inference="alignment:Splign:2.1.0"
     exon            2888..2959
                     /gene="Tbc1d9b"
                     /gene_synonym="RGD1310147"
                     /inference="alignment:Splign:2.1.0"
     exon            2960..3010
                     /gene="Tbc1d9b"
                     /gene_synonym="RGD1310147"
                     /inference="alignment:Splign:2.1.0"
     exon            3011..3067
                     /gene="Tbc1d9b"
                     /gene_synonym="RGD1310147"
                     /inference="alignment:Splign:2.1.0"
     exon            3068..3174
                     /gene="Tbc1d9b"
                     /gene_synonym="RGD1310147"
                     /inference="alignment:Splign:2.1.0"
     exon            3175..4493
                     /gene="Tbc1d9b"
                     /gene_synonym="RGD1310147"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggcctctcgg ctcagctcgg ctagactcgg gcgcagcgac cgcggcgcgc gcttccgcct
       61 cacgggctct ggcccggtgt gagctgccgc gggatgtggc tcggcccgga ggaggtgctg
      121 gtggccaacg cgctatgggt gacggagcgg gccaacccct tcttcgtgct gcagcggcgc
      181 cgaggccatg gcaagggtgg cggcctcacg ggtcttcttg tgggcaccct ggatgtggtg
      241 ctggactcca gtgcccgtgt ggccccctac cgcatcctgc accagaccca ggactcacag
      301 gtctactgga cggtggcatg tggttcttcc cgcaaagaga tcaccaaaca ctgggagtgg
      361 ctggaaaaca acttacttca gacgctgtcc atcttcgaca acgaggagga catcactacc
      421 ttcgtcaagg gcaagataca cggcatcatc gcagaagaga acaagaacct gcagccccag
      481 ggggacgagg acccagggaa attcaaggag gcagagctaa agatgcggaa gcagttcggc
      541 atgccagagg gagagaagct ggtcaactac tactcctgta gcttctggaa gggccgagtg
      601 cctcggcagg gctggctcta cctgaccgtc aaccacctgt gtttctactc cttcttgctg
      661 gggaaggaag tgagcctggt ggtacagtgg gtggacgtta cacgcttgga gaagaatgcc
      721 actttactct tccccgagag catccgtgtg gacacgcggg accaggagct attcttctcc
      781 atgttcctaa acattggtga gaccttcaag ctcatggaac agctggccaa cctggccatg
      841 cgacaactgc tggacagcga gggcttcctg gaggacaagg ccctgcccag gcctatccgg
      901 ccacataaga acatctcagc tctaaagcga gacctggatg cccgagctaa gaacgagtgc
      961 tacagggcca cgttccggct cccaaaagat gaacggctgg atggacacac aggttgcacc
     1021 ctgtggacac catttaacaa gctacacatc cccggccaga tgttcatctc ctataactac
     1081 atctgctttg ccagcaaaga ggaagatgcg tgccgcctca tcatacccct gagggaggtg
     1141 accattgttg agaaagctga cagctccagt gtcctgccca gccctctgtc tatcagcact
     1201 aagagtaaaa tgaccttctt gtttgccaac ctgaaagacc gtgacttcct ggttcagagg
     1261 atctctgact tcctccagaa aacaccgtcc aaacagacag gcagcatcgc tgggggaaca
     1321 aaggccagtg ttccagaccc agccccagag tctctcccaa ctcctcagga ggcatcagag
     1381 ccacccacca gcccaacctc tcccctaagc agccctctga gtttcagtac acaggagatt
     1441 cctactactt cccagggcct gctcaaagtc ttccagaaga actcacccat ggaggacctc
     1501 ggcgccaaag gggccaagga gaagatgaag gaagagtcct ggaacatcca cttctttgag
     1561 tacgggcgtg gcgtgtgcat gtaccgaaca gccaaaactc gggagctggt cctgaaaggc
     1621 atccccgaga gcctccgagg ggagctttgg ctcctcttct cgggggcctg gaatgagatg
     1681 gtgacccatc ctggctacta cgctgagcta gtagagaagt ccatggggaa gtacagcttg
     1741 gccaccgaag agatcgagcg ggacctccat cgctccatgc ctgagcaccc tgccttccag
     1801 aacgagctgg ggatcgctgc actccggcgg gtgctgaccg cctacgcctt ccgaaacccg
     1861 actattggct actgccaggc aatgaacatc gtgacctcgg tgctcctgct ctatggcagt
     1921 gaggaagaag ccttctggct actggtggcc ctgtgtgagc gcatgctgcc cgactactac
     1981 aataccagag tagtgggggc cctcgtagac caaggtatct ttgaagagct cacaagagac
     2041 gtcctgcccc ggctctcaga gaagatgcag gagctggggg tgatctccag catctcgctg
     2101 tcctggttcc tgaccctctt cctcagcgtc atgccctttg agagcgcagt ggttattgtt
     2161 gactgctttt tctacgaggg catcaaagtg atactgcagg tggccttggc tgtgctggac
     2221 gccaacatgg aacagctgct ggactgcagt gacgagggcg aggccatgac cgtgctgggc
     2281 aggtacctgg acaatgtggt caacaagcag agcatttctc cacctatccc acacctccat
     2341 gctctgctga ccagtggaga tgaccctcct gcagaggtgg acatctttga cctcctgaaa
     2401 gtgtcttatg agaagttcag cagcctgagg gctgacgaca ttgaacagat gcggtttaaa
     2461 cagaggctga aggtgatcca gtccttggaa gacacagcca agagaagcgt ggtccgggcc
     2521 ataccagggg acattggctt ctccatcgaa gagctggagg atctttacat ggtgtttaag
     2581 gccaagcatc tggcaagcca gtactggggt ggtaaccgct cagcagccat ccaccgagac
     2641 cccagcctgc cctacctgga gcagtaccgg atcgatgcca gccagtttcg ggagctcttt
     2701 gccagcctga cgccttgggc ctgtggctct cacacgcctg tcttggcagg ccgcatgttc
     2761 cgcctcctgg accaaaacaa ggactcactg atcaacttca aggagtttgt gacagggatg
     2821 agtgggatgt accatggaga cctcacagag aagctcaaag cgctctacaa gctgcacctg
     2881 cccccagctc tgatcccaga ggaagcggag tcagccctgg aggccgccca ttatttccca
     2941 gaggatagct cctcagaagc atctcctctg gcctcagatc tggatctttt cctgccttgg
     3001 gaggctcaag caggactgca ggagcagcag gaaggaagag gaagtgagga catccaggaa
     3061 aggagagagg agaaggagac cagcccccct gactaccgac actaccttcg aatatgggct
     3121 aaggagaaag aggctcagaa ggaaaccatc aaggaccttc ccaagatgaa ccaggagcaa
     3181 ttcattgagc tgtgtaaaac actttacaac atgtttagcg aagacccttt ggaacaggac
     3241 ttgtaccatg ccatcgccac tgtggccagc cttctcctcc gcattggtga ggtggggaag
     3301 aagttttcgg ccctgaccac caagaagccc agggatggtg cccacagtgg ggatcacaac
     3361 agtgccacag aagaggatga gccacccata tccaaactcc atcaggaccc agcacgggaa
     3421 tgccagccac cagctgcagg ggatccgcag gccaaagcca gtggcgacat gcatcttggg
     3481 aaagcattgc aggacagtca cgtgatagtg gagggaggca gcggcgaggg gcagggctct
     3541 ccttccctgc ttttgtctga tgatgaaacc aaagatgaca tgtccatgtc ctcctactca
     3601 gtagtcagca cggggtccct gccgtgcgag gacctcacag aagacacagt gctggtggga
     3661 ggagaagcct gcagccccac tgccacctca cggatgggag gcaccgtgga catggattgg
     3721 tgcatttcct tcgagcagat cctggcctcc atcctgacag agtctgtgct agtgaacttc
     3781 tttgagaaga gggtagacat tggactcaag atcaaagacc agaagaaagt cgaaaggcag
     3841 ttcagcacct ccagtgacca tgagccccct ggggtcttgg gctgagctgt gaaatggaag
     3901 ttggtctctg tctccttcct ttatcccttg ctgtgttctc ctcacagata cacctgttct
     3961 tgaagcaggg tgtcacagaa gcaaatgtca ggtcaatgca gacccagttg ccttacaggg
     4021 attccctagg ccagggcaac ctcttcctcc ctgcacttgg ttacctggag gacctgcctc
     4081 ctgtacccat agcattagag ccttttgggt ctgcccctgc ctgcttcttg ctcctgcact
     4141 ctgtgctgtg cacacactac atcagttgct ctatctatgg aaagacctac agccatgtgg
     4201 cctggccacc agttgtcatt ttgccatgtg cttgggctcc aaaggatgca accttctaga
     4261 caccctctga agttcttcag cctgaatcta agtcttagga ctgaggaagc aggagaatgt
     4321 ctgttgcatg ggtaggagca ccgcactcct aacttatgag gtctccattc ctctgcatca
     4381 ttaactttaa aagcacatcc ctcaggtcct cctctcttcc cttgccctca ttttagttgg
     4441 ctaaaaacca cactgtgctc aatgccttaa taaatccctg aaagaaagaa aaa
//
