LOCUS       NM_001415072            5834 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus TBC1 domain family member 9 (Tbc1d9), mRNA.
ACCESSION   NM_001415072 XM_006255246
VERSION     NM_001415072.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5834)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000019.1.
            
            On Dec 21, 2022 this sequence version replaced XM_006255246.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643298.75917.1,
                                           SRR26643429.55577.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-850               JAXUCZ010000019.1  41846834-41847683   c
            851-961             JAXUCZ010000019.1  41803590-41803700   c
            962-1080            JAXUCZ010000019.1  41793494-41793612   c
            1081-1309           JAXUCZ010000019.1  41784157-41784385   c
            1310-1571           JAXUCZ010000019.1  41783491-41783752   c
            1572-1779           JAXUCZ010000019.1  41782200-41782407   c
            1780-1980           JAXUCZ010000019.1  41779111-41779311   c
            1981-2151           JAXUCZ010000019.1  41777530-41777700   c
            2152-2302           JAXUCZ010000019.1  41776580-41776730   c
            2303-2517           JAXUCZ010000019.1  41769557-41769771   c
            2518-2635           JAXUCZ010000019.1  41765608-41765725   c
            2636-2921           JAXUCZ010000019.1  41764422-41764707   c
            2922-3051           JAXUCZ010000019.1  41763500-41763629   c
            3052-3150           JAXUCZ010000019.1  41760247-41760345   c
            3151-3219           JAXUCZ010000019.1  41760023-41760091   c
            3220-3460           JAXUCZ010000019.1  41758251-41758491   c
            3461-3526           JAXUCZ010000019.1  41754855-41754920   c
            3527-3613           JAXUCZ010000019.1  41753533-41753619   c
            3614-3688           JAXUCZ010000019.1  41750452-41750526   c
            3689-3792           JAXUCZ010000019.1  41750262-41750365   c
            3793-5834           JAXUCZ010000019.1  41746732-41748773   c
FEATURES             Location/Qualifiers
     source          1..5834
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /map="19q11"
     gene            1..5834
                     /gene="Tbc1d9"
                     /gene_synonym="RGD1308221"
                     /note="TBC1 domain family member 9"
                     /db_xref="GeneID:304645"
                     /db_xref="RGD:1308221"
     exon            1..850
                     /gene="Tbc1d9"
                     /gene_synonym="RGD1308221"
                     /inference="alignment:Splign:2.1.0"
     CDS             721..4509
                     /gene="Tbc1d9"
                     /gene_synonym="RGD1308221"
                     /note="vascular Rab-GAP/TBC-containing; TBC1 domain
                     family, member 9 (with GRAM domain)"
                     /codon_start=1
                     /product="TBC1 domain family member 9"
                     /protein_id="NP_001402001.1"
                     /db_xref="GeneID:304645"
                     /db_xref="RGD:1308221"
                     /translation="MWVNPEEVLLANALWITERANPYFILQRRKGHGGDGGGGGGLAG
                     LLVGTLDVVLDSSARVAPYRILYQTPDSLVYWTIACGGSRKEVTEHWEWLEQNLLQTL
                     SIFENENDVTTFVRGKIQGIIAEYNKINDVKEDEDTEKFKEAIVKFHRLFGMPEEEKL
                     VNYYSCSYWKGKVPRQGWMYLSINHLCFSSFLMGREAKLVIRWVDITQLEKNATLLLP
                     DMIKVSTRSSEHFFSVFLNINETFKLMEQLANIAMRQLLDNEGFEQDRSLPKLKKKSP
                     KKVSALKRDLDARAKSERYRALFRLPKDEKLDGHTDCTLWTPFNKMHILGQMFVSTNY
                     ICFTSKEENLCSLIIPLREVTIVEKADSCSVLPSPLSISTRNRMTFLFANLKDRDFLV
                     QRISDFLQQTTSRIYSEFSGSCNSSDDEVYSRPSSLVSSSPQRSTSSDADGERPFNLN
                     GNSVPTATQTLMTMYRRRSPEEFNPKLAKEFLKEQAWKIHFAEYGQGICMYRTEKTRE
                     LVLKGIPERMRGELWLLLSGAINEKATHPGYYEDLVEKSMGKYNLATEEIERDLHRSL
                     PEHPAFQNEMGIAALRRVLTAYAFRNPNIGYCQAMNIVTSVLLLYAKEEEAFWLLVAL
                     CERMLPDYYNTRVVGALVDQGVFEELARDYVPQLYDCMQDLGVISTISLSWFLTLFLS
                     VMPFESAVVVVDCFFYEGIKVIFQLALAVLDANVDKLLGCKDDGEAMTVLGRYLDSVT
                     NKDSTLPPIPHLHSLLSDDVGPYPAVDIFRLIGTSYEKFGTIRADLIEQMRFKQRLKV
                     IQTLEDTTKRNVVRTIVTETSFTIDELEELYALFKAEHLTSCYWGGSSNAPDRHDPSL
                     PYLEQYRIDFEQFKGMFVLLFPWACGTHSDVLASRLFQLLDENGDSLINFREFVSGLS
                     AACHGDLTEKLKLLYKMHVLPEPSCDQDEPDSAFEATQYFFEDITPECTHVVGLDSRG
                     KQSADEGFVTVSLKQDRGKRANSQENRHYLKLWTAENKSKSKNAKDLPKLNQGQFIEL
                     CKTMYNMFSEDPNEQELYHATAAVTSLLLEIGEVGKFFITQPAKEDAVPGPPCSQAIP
                     GMLFPKKGSSQSYVVESTDPLPASLAGDREEHSLGGQMEDIKLEDSSPRDNGACSSML
                     ISDDDTKDDSSMSSYSVLSAGSHEEDKLHCEDIGEDTVLVRSSQGRAALPRSSSLDRD
                     WAITFEQFLASLLTEPALVRYFDKPVCMMTRVTSAKNIRMMGKPLTSASDYDISALSG
                     "
     exon            851..961
                     /gene="Tbc1d9"
                     /gene_synonym="RGD1308221"
                     /inference="alignment:Splign:2.1.0"
     exon            962..1080
                     /gene="Tbc1d9"
                     /gene_synonym="RGD1308221"
                     /inference="alignment:Splign:2.1.0"
     exon            1081..1309
                     /gene="Tbc1d9"
                     /gene_synonym="RGD1308221"
                     /inference="alignment:Splign:2.1.0"
     exon            1310..1571
                     /gene="Tbc1d9"
                     /gene_synonym="RGD1308221"
                     /inference="alignment:Splign:2.1.0"
     exon            1572..1779
                     /gene="Tbc1d9"
                     /gene_synonym="RGD1308221"
                     /inference="alignment:Splign:2.1.0"
     exon            1780..1980
                     /gene="Tbc1d9"
                     /gene_synonym="RGD1308221"
                     /inference="alignment:Splign:2.1.0"
     exon            1981..2151
                     /gene="Tbc1d9"
                     /gene_synonym="RGD1308221"
                     /inference="alignment:Splign:2.1.0"
     exon            2152..2302
                     /gene="Tbc1d9"
                     /gene_synonym="RGD1308221"
                     /inference="alignment:Splign:2.1.0"
     exon            2303..2517
                     /gene="Tbc1d9"
                     /gene_synonym="RGD1308221"
                     /inference="alignment:Splign:2.1.0"
     exon            2518..2635
                     /gene="Tbc1d9"
                     /gene_synonym="RGD1308221"
                     /inference="alignment:Splign:2.1.0"
     exon            2636..2921
                     /gene="Tbc1d9"
                     /gene_synonym="RGD1308221"
                     /inference="alignment:Splign:2.1.0"
     exon            2922..3051
                     /gene="Tbc1d9"
                     /gene_synonym="RGD1308221"
                     /inference="alignment:Splign:2.1.0"
     exon            3052..3150
                     /gene="Tbc1d9"
                     /gene_synonym="RGD1308221"
                     /inference="alignment:Splign:2.1.0"
     exon            3151..3219
                     /gene="Tbc1d9"
                     /gene_synonym="RGD1308221"
                     /inference="alignment:Splign:2.1.0"
     exon            3220..3460
                     /gene="Tbc1d9"
                     /gene_synonym="RGD1308221"
                     /inference="alignment:Splign:2.1.0"
     exon            3461..3526
                     /gene="Tbc1d9"
                     /gene_synonym="RGD1308221"
                     /inference="alignment:Splign:2.1.0"
     exon            3527..3613
                     /gene="Tbc1d9"
                     /gene_synonym="RGD1308221"
                     /inference="alignment:Splign:2.1.0"
     exon            3614..3688
                     /gene="Tbc1d9"
                     /gene_synonym="RGD1308221"
                     /inference="alignment:Splign:2.1.0"
     exon            3689..3792
                     /gene="Tbc1d9"
                     /gene_synonym="RGD1308221"
                     /inference="alignment:Splign:2.1.0"
     exon            3793..5834
                     /gene="Tbc1d9"
                     /gene_synonym="RGD1308221"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aggaaacaaa aacattacca accattggct gcgtccacct tcgactcctg gctctagagc
       61 cgggtctaaa acctggagca cacgtttcca gggcaggggt ggcgctgtcc cgtcgagcgt
      121 caaccttgaa tacacacgac acacgcaggc tctgcgatcg gggcagcttc ctccacgctg
      181 ggatgggcgt ggggccctgc gctccgcaca cagttcccac cgggctcgcg agaagccacc
      241 cgccgtcacc cgggctcgcg gcgactgagc cgcgctgtcg tcattcattc gctgctcccg
      301 gagcgtcctt ccagctagct gccccgacgc tcagtgttca cgagcagtga tctccggctg
      361 ggctactgga gatcaccgcg ccctgagggc tctgattccc gcacaagctc gcccttgaac
      421 agcgccgcgc accgagaccg agccctgcag cttgctcgcc cctccgtggg tcgggccggg
      481 ctgcgaggct gtgcgcctgg cgagcgcggc gccgcggaga ggatgctact tgctcggtcc
      541 caatccccgt cgtcgttccc ggctgcccgc tggatctttg tcgcgggccg ggagccgcgg
      601 gccgcagtct gctgaaggcc atcgcggccc cgcacccaca gacgggcggg cgcgcgtgtg
      661 cccgggagag cgcgccagtg tctgggcccc tttgtgcgac tgcccgaggc caccgggacc
      721 atgtgggtga atcccgagga ggtgctgctg gccaacgcgc tgtggatcac tgagagagcc
      781 aacccctact tcattctgca acgaaggaag ggccacgggg gcgacggagg cggcggcggc
      841 ggattggcgg gcctcctcgt gggtaccctt gacgtagtat tggactccag tgcccgtgtc
      901 gcaccgtacc gaatcctcta tcagactccg gactctctag tctattggac catcgcctgt
      961 ggtggttcca ggaaggaggt taccgagcac tgggaatggc tcgagcagaa tctactgcag
     1021 acgctctcca tctttgagaa cgagaatgat gtcaccacat ttgtaagagg aaaaatacag
     1081 ggcatcattg cagaatacaa caagatcaac gatgtaaaag aagatgagga cacagagaag
     1141 tttaaagagg ccatcgtgaa gttccataga ctgtttggga tgcccgagga agagaaactc
     1201 gtcaactatt actcctgtag ctactggaag gggaaggtcc cccggcaggg ctggatgtac
     1261 ttaagcatca accacctgtg tttttcctcc ttcctgatgg ggagggaagc caagctggtg
     1321 atccggtggg tggacatcac tcagctggag aagaacgcca cgttgcttct gccggatatg
     1381 atcaaagtga gcacacggtc cagtgagcat ttcttctctg tgttcctcaa catcaatgag
     1441 acattcaagc tgatggaaca gcttgccaac atagccatga ggcagctctt ggacaatgaa
     1501 ggatttgaac aagaccggtc cctgccaaaa ctcaagaaga aatcacccaa gaaagtgtct
     1561 gctctgaaac gtgatctgga tgccagggca aagagtgagc gataccgcgc cctttttcgg
     1621 ctgcccaaag atgaaaagct ggacgggcac actgactgca ccctctggac cccgtttaac
     1681 aagatgcaca ttttgggtca gatgtttgtc tccacaaatt atatctgctt taccagcaag
     1741 gaggaaaacc tctgcagcct cataattcca ctccgggaag taaccatcgt ggagaaggct
     1801 gacagctgca gtgtgctccc cagccctctg tccatcagca ccagaaacag gatgaccttc
     1861 ttgttcgcca acttgaaaga cagagacttt ctggtgcaaa ggatctcaga tttcttgcag
     1921 caaacgactt ctagaatcta ctcggagttc tcaggaagct gcaacagctc agatgatgag
     1981 gtgtattctc ggcccagcag ccttgtttcc tccagtcccc agagaagcac cagctcagac
     2041 gctgatggag agcgcccctt taaccttaac ggcaacagcg tccccacagc cacacaaacc
     2101 ctcatgacca tgtaccggcg gcgatctcct gaagaattca acccaaaatt ggccaaagag
     2161 tttttgaaag aacaagcctg gaagattcac tttgctgagt atgggcaggg gatctgcatg
     2221 taccgcacgg agaagacccg cgagctggtg ctaaagggca tcccagagcg catgcgcggg
     2281 gagctctggc tgctgctttc aggggccatc aatgaaaagg ccacacaccc cgggtactat
     2341 gaggacctgg tggagaagtc tatgggaaag tacaatcttg ccacagagga gattgagaga
     2401 gacttacacc gttcccttcc agagcaccca gctttccaga acgaaatggg catcgcggct
     2461 ctgaggagag tcttaacggc ttatgctttt cgaaatccca acatagggta ttgccaggcc
     2521 atgaacattg tcacttcagt gctgctgctt tatgccaaag aggaggaggc cttctggctg
     2581 ctggtggcct tgtgtgagcg catgcttccg gattactaca acaccagggt tgtaggtgcc
     2641 ctggtggacc agggagtctt cgaggagctg gctcgagact atgtccccca gctgtatgac
     2701 tgcatgcagg acctgggggt gatctctacc atctccctgt catggttcct cacgctcttt
     2761 ctcagtgtga tgccatttga gagtgccgtg gtggtcgtgg actgtttctt ctatgaagga
     2821 atcaaagtga tattccagct ggccctcgct gtactggatg ccaatgtgga taaactgtta
     2881 ggctgcaagg acgatgggga ggctatgact gttctgggaa ggtacttaga cagcgtgacc
     2941 aacaaagaca gcactctgcc acccatccct catctccact ccctgctcag tgacgacgtg
     3001 gggccctacc ctgcggtgga catcttcaga ctcataggaa catcctacga gaaatttgga
     3061 actatccggg cagatttgat tgagcaaatg agatttaagc agaggctgaa agtgatccaa
     3121 accctggagg acaccaccaa acgcaatgtg gtacggacca ttgtgacgga gacctccttc
     3181 accattgatg agctggaaga actatatgcg cttttcaagg ctgaacatct gaccagctgc
     3241 tactggggtg ggagcagcaa tgccccggac cggcacgacc ccagcctgcc ttacctggag
     3301 cagtaccgca tcgacttcga gcagttcaag ggcatgtttg tgctcctctt tccctgggcg
     3361 tgtggcactc attctgatgt gctggcctcc cgcttgttcc agctactgga cgagaatggg
     3421 gactccttga ttaacttccg agagttcgtc tctgggctga gtgctgcgtg ccatggggac
     3481 ctcacagaga aactcaaact cctgtacaaa atgcacgtct tgcctgagcc atcctgcgat
     3541 caagacgagc ccgactctgc ctttgaagcg acccagtact tctttgaaga tatcacccca
     3601 gaatgcacac atgttgttgg cttggacagc agaggcaagc agagtgctga tgagggtttc
     3661 gtcaccgtga gtctgaagca ggacagaggg aaaagggcaa attctcaaga gaaccgccac
     3721 tatctaaaac tctggactgc agaaaataag tcaaagtcaa aaaatgccaa agatttgccc
     3781 aagttgaatc aggggcagtt tatcgagctc tgtaagacca tgtacaacat gttcagtgaa
     3841 gaccccaatg aacaggagct gtaccacgcc acggctgcgg tgaccagcct cctactggag
     3901 atcggagagg tcggcaagtt cttcattact cagcccgcca aggaagatgc ggttcctgga
     3961 ccaccctgca gccaggccat ccccggcatg ctcttcccca agaaggggtc cagccagtcc
     4021 tatgtggtgg aatccacaga cccactccca gctagcctgg cgggtgacag ggaggagcac
     4081 tccctgggag gacagatgga ggacattaaa ctagaggact cctcacccag ggacaacggg
     4141 gcctgctcct ccatgttgat ctccgatgac gacaccaagg acgacagctc catgtcatcc
     4201 tactcggtgc tgagtgccgg ctcccacgag gaggacaaac tgcactgtga ggacattggg
     4261 gaggacactg tcctggtgcg aagcagtcag gggagagctg ccctgcccag gagcagcagc
     4321 ctggaccggg actgggccat taccttcgag cagttcctag cctcgctcct gacggagcct
     4381 gctctcgtga ggtactttga caagccggtg tgcatgatga ccagggtcac cagtgcgaag
     4441 aatatccgta tgatgggcaa gcccctcacc tcagccagtg actacgacat ctctgccctg
     4501 tcaggctgat gcgaagggaa gccaaggatt ttttttatgt ctgtctgtgt tggggggtgg
     4561 ggggactctt tccttttaaa ttaaatattt attagtcctg gcttaaaaag cctagtgttt
     4621 tcataatgta acacaatgaa aaatgttgaa aaatagatac cccaaagtga ggcactaaca
     4681 gtctgcctac gaggcatggc taccagaacc tagtttattc agtgatttct ccccaaagac
     4741 caaaccgtca ttgaaatgtg tattataact tagtactctt gctgtatcca tagtaagaaa
     4801 atagctctgt tcgacgctaa taaagtcagc catgctctga gataaaatta gacctaggga
     4861 ggaaaatgga gtgtcgtgag cacgactgtt tttagaagga aatgaattgt cagctggggg
     4921 taaatctcga agtactttag tgagacttaa aactattttt taagatttga aatatatttc
     4981 gtaaaaattc tctatccaaa aaatcatatt ctacgctggt ccccctccaa gggggacacg
     5041 tttgggtttc aggtggttat gaaaatatta atcgttttac atgatgctgg aaggacacat
     5101 ttgatcagtg tggacattga caacttgctc tgtttattta tgttagctgt gggggagggg
     5161 tgacaatgca atccatctga caaccaaatg tgaacacaga gaggccccag gacacaggat
     5221 ccagcttttt ttttcagttt ttgcttttga agaaccagaa gtcctgatac ttctcgtact
     5281 gggtttttat gcttgttact cattgaaaat acagcaaaat acttataata aaattaaaac
     5341 aacagtcttt accacttcca tattttctgt agagaaatta tatatcacgt atgaccaact
     5401 tcccattaag tcactataga ggttacgttc gccgcaaagg gattctgcaa gatgacgtag
     5461 tgtttaaagc agagcctgtc actttatatg gcagaatgga tgttctggct cctgaagggg
     5521 cgtggccatc aaagctcgca cgcctgcact ttgaattctt atttctgttt actgctcttg
     5581 gtttttgttc gttacagacg ctgggagact ttccgctccg ctctcagcct cacaatcatg
     5641 tccacgttac ccctgcttgt tccgatgtta ttttccaaca ctcctttctt ttattacata
     5701 ccgagtcctt tctttactgt cccagctgtg attttttttt attttattta cagaatgatt
     5761 tttaaactgt caaatgaagt agttatgaac ctcgactagg ataaatgtga acaaataaaa
     5821 tacttcagat atgg
//
