LOCUS       XM_039099304            5859 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus TBC1 domain family, member 32
            (Tbc1d32), transcript variant X1, mRNA.
ACCESSION   XM_039099304
VERSION     XM_039099304.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051355.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039099304.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5859
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5859
                     /gene="Tbc1d32"
                     /note="TBC1 domain family, member 32; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     ESTs, 1 long SRA read, 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 51 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:100359595"
                     /db_xref="RGD:2323599"
     CDS             628..4533
                     /gene="Tbc1d32"
                     /codon_start=1
                     /product="protein broad-minded isoform X1"
                     /protein_id="XP_038955232.1"
                     /db_xref="GeneID:100359595"
                     /db_xref="RGD:2323599"
                     /translation="MAHFSGEDEVMLQAMLRQLFQSVKEKITGAPSLECAEEILLRLE
                     ETDENFHNYEFVKYLRQYICNTLGSMIEEEMEKCTSGQNQGEEFGYDTVVQHVTKRTQ
                     ESKEYKEMMHSLKNIMMVVVESMINKFEEDETRSQDRQRKVQKEQSGSCCTDNCSDSD
                     SSFNQSYKFCQGKLQLILDQLDPGQPKEVRYEALQALCSAPPSDVLSCENWTTLCEKL
                     TTSLSDPDPMFTDRILKFYAQTFTLSPLHMTKEIYTSLAKYLELYFLSRENHLPTLSS
                     GVDITSPNVTRLLKKVRLLNEYQKEVPSFWIRHPEKYMEEIVESTLSLLSVKHEQSHL
                     ASQKILDPIYFFALVDTKAVWFKKWMHAYYSRTAVLRLLEKKYKCLITTAVQQCVQYL
                     ELCETMKADEILGHSKHCGNKQKNFYYSGQELQYIYFIHSLCLLGRLLIYTQGRKLFP
                     IKLKNRKDSVSLTNLLVLFTQLIYYSPSCRKMAPVVYSENYSPASMVTDVLRMLCDQK
                     ECAVECLYNSTVTEALLQPIQNLMKGTAAAPDFSEIALIHIADILARIASVEEGLILL
                     LYGENMNSSEEESPTGAHIIAKFSKKLLEDAISIFPGSETLPVVKGAFISVCRQIYST
                     CEGLQVLLPYGLHDSIAKAWKKTSLLSERIPTPVEGSDSVSSVSQESPNSVAVAWEDN
                     LLDDLLNFAATPKGLLLLQRTGAISDCVTFMFSQYAKQPQVNRQKKFGYEVLVVQVAS
                     TAAGAVALQNSGFISALITELWANLECGRDDVRLTHPRATPVDPIDRSCQKSFLALVN
                     LLSFPAVYELTANQELPNKAEYSLREVPTCIIDILDRLIVLNSEAKIRSLLNYEQSHT
                     FGLRLLSVVCCDLDALLLLEAQYQVSSMLLHAQEENTFETSENHRSFIIDGLSVERNH
                     VLVRINLIGGPLERILPPRMLEKGDDPYPWPMFSSYPLPHAYLSEGAQSADVKQDNDI
                     GNLLSCFKMSDKQTEWIENCRKQFCKTMKSKPDVVRGSVLGELLEKFVLLLTENPSEC
                     YFPSVEYTATDANVKNESLSSVQQLGIKMTVRYGKFLNLLKDGAENDLALVLKHCEKF
                     LKQQQSPVKSSLLCLQGNYAGHDWFVSSLFIIMLGDKEKTLHFLQHFSRLLTSAFLWV
                     PRLHMSRYLPVDTLETGIRPVYFCSAYYIEMLLKAEVPLVFSAFHMSGFAPSQICLQW
                     ITQCFWNYLDWIEICHYIATCVVLGPDYQVYICIAILKHLQRDILHHTQTQDLQVFLK
                     EEALHGFRVSNYFEYMETLEQNYRPVLLRDMRSVRGQST"
ORIGIN      
        1 tcccagtctg tcatatggca tttccttacc aattacataa ttgcgctaaa cttaattgtt
       61 agtttctttt ctgtttggag tgccatcctt ataggaaggg aacagttgtt atagttgctg
      121 tataaacacg gtttttccac actgcgatat cactcaatct ccagttgata cttcagtttg
      181 gcttcctttg ccctgctttt attagctgcc ccttaccatt ctgtcccctc cctccttcct
      241 gcaggtcaat gcacccgcct cctggattca cccctccctt gggcgggtca gccagatgac
      301 gtcaggcgca gccgggcggt ttcccgttag gcccgccccc tagatcctga ggtgtctgta
      361 gttcctgttg gggtccgcct gagttctgca cgtatggacg aacgtcaagc agctaacgcc
      421 ggcctcaacc agttcctgca ctccaaaccc agagccgggt cttccagcac aacgccactc
      481 aaccgctgcc ccgcccccag gcgctagctg tggtttccta gggaacgacg ctgcgcgtcg
      541 gcggcgagtg ggccgggtcg cgcgtgcgca gtgcgctatg ttggtggcga ccccgtggag
      601 gttgcagaga tttgactgcc gcccagcatg gcccatttct ccggcgagga tgaagtgatg
      661 ctgcaggcga tgctccggca gctgttccag agcgtgaagg agaaaatcac tggagctccc
      721 tccttggagt gcgcagagga gatcctcttg cggctggagg aaactgacga aaattttcac
      781 aactatgaat ttgtgaaata cctcagacag tacatatgta acacgttggg gtcgatgatt
      841 gaagaagaaa tggaaaaatg cacatctggt cagaatcagg gagaggagtt tggctatgac
      901 accgttgtgc agcacgtcac caaaagaacg caggaatcca aagagtataa ggagatgatg
      961 cattccctga agaacattat gatggtggtg gtcgagtcga tgatcaacaa gttcgaggaa
     1021 gatgagacac gcagtcagga caggcagagg aaagtgcaga aggagcagag tggcagctgc
     1081 tgtacagaca actgctccga cagtgactcc tccttcaacc agagttacaa attctgtcaa
     1141 gggaaactac agttgatttt agatcagttg gatcctgggc aacctaagga ggtgagatat
     1201 gaagctttac aagctctatg ctcagctccc ccatccgacg tcctgagctg tgaaaactgg
     1261 accactctct gtgagaaact gaccacgtct ctgtctgatc cagatcctat gttcactgac
     1321 cggattttaa agttctacgc gcagactttt acactctcac cgctacacat gaccaaggaa
     1381 atttatacaa gcttagctaa atatctggag ttatattttc tttctagaga aaatcacctt
     1441 cctactcttt caagtggagt agatataact agccccaatg tgacccgctt actgaaaaag
     1501 gtccgccttc tgaacgagta tcagaaagag gttccgtctt tttggattcg tcacccagag
     1561 aagtatatgg aagagattgt ggagagcact ctgtccctgt tgtcagtcaa acatgagcaa
     1621 agccaccttg cgtcacagaa gattttggat cccatctatt tttttgcgtt agttgatact
     1681 aaggctgtgt ggttcaaaaa atggatgcat gcatattaca gcagaactgc agtactaaga
     1741 cttcttgaaa agaaatataa gtgtctgata actacagccg ttcagcagtg tgttcagtac
     1801 ttagaattat gtgagactat gaaagctgat gaaattttgg gacattcaaa gcattgtgga
     1861 aacaagcaaa aaaatttcta ctactcgggc caagaattgc aatacattta tttcatccac
     1921 tcactgtgcc ttttaggaag attgctgatc tatacacaag gcaggaaatt attccccata
     1981 aagctgaaga acagaaaaga ttcagtttcc ctcacaaatc tgctggtttt gtttactcaa
     2041 cttatctatt attcaccaag ttgtcgaaag atggcgcccg tcgtgtattc agagaattat
     2101 tctcctgcga gcatggtgac tgatgttctg cggatgctgt gcgaccagaa ggaatgtgca
     2161 gttgagtgct tatacaacag cactgtgacc gaggcccttc tccagcccat tcagaacctg
     2221 atgaaaggca ctgcggctgc tccagatttc tctgaaatag ctctaattca catagctgat
     2281 attttggcaa gaattgcttc tgttgaggaa ggacttattt tacttctgta tggagaaaat
     2341 atgaactctt ctgaagaaga gagccctaca ggtgctcata taatagccaa gttttcaaag
     2401 aaacttctag aagacgctat ttctattttt cctggatcgg aaacgttgcc tgtagtaaaa
     2461 ggagcattta tttctgtgtg tcgtcagata tatagtacat gtgaaggctt gcaggtgctg
     2521 cttccttacg gcttacatga ttctatagca aaggcatgga agaagacaag cttgctatca
     2581 gaaaggatcc ccactccagt agagggctct gactcagttt cttcagtgag ccaggagtct
     2641 cccaacagtg tggctgtggc ttgggaagac aatttgttgg atgatttact caattttgct
     2701 gccaccccca aaggactgct gcttcttcag aggacaggtg ccatcagtga ctgtgtgacg
     2761 tttatgttca gccagtacgc aaaacagcca caggtcaaca ggcagaagaa gttcggctat
     2821 gaagtcttgg ttgtgcaggt ggcatccaca gcagcgggtg cagtggctct gcagaattca
     2881 ggcttcatta gtgccttgat aactgaatta tgggccaacc ttgaatgtgg aagagatgat
     2941 gtaaggctaa ctcatcccag agctacccca gtggacccaa ttgaccgaag ctgtcagaag
     3001 tccttcctcg cgctggtgaa cctgttgtcc ttccctgcag tatatgaact aacagccaat
     3061 caggagcttc ctaataaggc agagtattct cttcgtgaag tcccaacatg tatcattgat
     3121 atattggata ggcttatcgt tttgaactct gaagctaaga ttcggtcttt actgaattat
     3181 gaacaatcac acacctttgg cctaaggtta ctaagcgtgg tgtgctgtga tctggatgcc
     3241 cttctcttat tggaggctca gtatcaagta tccagcatgt tattacatgc acaggaagaa
     3301 aacacctttg agacctcaga gaaccacagg agttttataa ttgatggatt atcagtggag
     3361 agaaatcatg ttcttgtaag gattaatctc attggtggac ctttggagcg gattttgccc
     3421 ccgaggatgc ttgagaaggg ggacgacccg tatccttggc caatgttttc ttcatatcca
     3481 ctgccacacg cttacctgtc agaaggtgca caaagtgctg atgtaaagca agacaatgat
     3541 attggaaacc tgttatcatg cttcaagatg tcagataagc aaacggagtg gatagagaac
     3601 tgccgaaaac agttttgtaa aacaatgaag tccaagccgg atgtagtccg tggaagtgtt
     3661 ttaggagaac tacttgaaaa atttgtgctt cttctcactg aaaacccatc tgaatgctac
     3721 ttcccttcag tggaatacac agctactgat gcaaatgtga agaatgagag tctctcatct
     3781 gtgcagcagc ttggcattaa aatgactgtc aggtatggga agtttctcaa cttgttaaaa
     3841 gatggtgcag aaaatgatct tgctttggtc ttaaagcact gtgagaaatt cctgaaacaa
     3901 cagcagtcgc cagtcaagtc ttctctcctg tgccttcaag gaaactacgc aggccatgac
     3961 tggtttgtgt cttctctgtt catcataatg cttggggaca aagagaagac actccacttt
     4021 ctccagcatt tctccaggct tctgacgtct gccttccttt gggtaccaag gctacatatg
     4081 tcaaggtacc tgcctgtcga caccctagag actggtatcc gtcccgtcta cttctgcagc
     4141 gcctactaca tcgaaatgct gctgaaggcc gaggtgccgc tcgtgttttc cgctttccac
     4201 atgtctgggt ttgctccatc ccagatttgc ctacagtgga taactcagtg tttttggaat
     4261 tacctagatt ggatagaaat atgccattat attgctactt gtgttgtcct tggccctgat
     4321 tatcaagtgt atatctgcat agccatcctc aaacatctgc agcgagacat tctccaccac
     4381 acccagactc aagatctgca agtctttctc aaagaagaag cactgcacgg gtttcgagtg
     4441 agcaactatt ttgagtacat ggagactttg gagcagaact accgaccagt gctgctgcgg
     4501 gacatgcgca gcgtcagagg gcagagcaca tagatcagaa gaaacactcg gatgttatgt
     4561 cctattcatc tgtaaaggag acaaggcaac ttgatggtgt tctgtctcca tctgtaagat
     4621 gctctgtgtg tccgtgctct gtaaatcagc accgcgggct ttggaacaga atacattcac
     4681 cttgcaattt gctcagtgtg tgagacgaag caagttcatt tgtgaagtcc cttgttcttt
     4741 acagctttag aatcagttct agcttatagt ttttatttta tgtttggctt acaaagggat
     4801 caaagaccta tttgttttta cattctagta gtatttttct atttgaaact actagaagaa
     4861 aaactctcga aaatatgaac atagccaatg gcttctgagt aagattccaa tagctaagga
     4921 aataagggaa gcgagggtat aaatcacgga aaatcctggc caattactca cccaataaag
     4981 ggataatatt tagaacatat gttgagctaa gtaaattaca aatggtagaa gaacaaaaat
     5041 ctccagtcaa taagcgggca gggatggtag caaagccttc acatgatgaa gtgcccgtgg
     5101 aaaacgggtt tatgaaggga ggctctctgc ctttatccac ctggagaatg cccatccaaa
     5161 ccactttacc tcatcaaaat ggccatcatc aagaaaacca atgctaggca ggactggtaa
     5221 ggagatggga gttaggaatt attagtggct atgtaaattc ttctagcaac tatggaaata
     5281 ggtgtggagg ttcctcaaaa tagaacttgg cctaaccata cagcttacat gatatagatg
     5341 aatacataaa tgtcagatga caatggagat ccctgagcat ctttatttat cttgacacga
     5401 ctcataatag ccaggttgtg gagtgtgcca cggtattcat ggtgtgtgag tacaataggg
     5461 gttttctcag ccacaaagag cgaagtggag catttgcagg aaattgggat cggagatcat
     5521 gtaggtgtta aaagccagac acctaacgac atgtacatat gttttatctt ctttgtaccc
     5581 ccagcaggag gtgggtcact aaactaaaag aataagcagt gggaacggta cagggattct
     5641 aagaatgcag tggaggtctg aggaccacag acgtggctcg gtgtcaaagg aacttacctc
     5701 tgaggctgac agcttggtat caacccctct aacacatgtg gtcaaagaag agaagcgacc
     5761 ctcaagagct cctctctgac ctccatatgc acactgtagg tgggcctgga actgtgaagt
     5821 caaagttttt acaaataaaa gagtaatgtg agacacata
//
