LOCUS       NM_001134842            3475 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus TBC1 domain family, member 31 (Tbc1d31), mRNA.
ACCESSION   NM_001134842 XM_216928
VERSION     NM_001134842.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3475)
  AUTHORS   Jakobsen,L., Vanselow,K., Skogs,M., Toyoda,Y., Lundberg,E.,
            Poser,I., Falkenby,L.G., Bennetzen,M., Westendorf,J., Nigg,E.A.,
            Uhlen,M., Hyman,A.A. and Andersen,J.S.
  TITLE     Novel asymmetrically localizing components of human centrosomes
            identified by complementary proteomics methods
  JOURNAL   EMBO J 30 (8), 1520-1535 (2011)
   PUBMED   21399614
REFERENCE   2  (bases 1 to 3475)
  AUTHORS   Florea,L., Di Francesco,V., Miller,J., Turner,R., Yao,A.,
            Harris,M., Walenz,B., Mobarry,C., Merkulov,G.V., Charlab,R.,
            Dew,I., Deng,Z., Istrail,S., Li,P. and Sutton,G.
  TITLE     Gene and alternative splicing annotation with AIR
  JOURNAL   Genome Res 15 (1), 54-66 (2005)
   PUBMED   15632090
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000007.1.
            
            On Sep 9, 2008 this sequence version replaced XM_216928.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360186.2650187.1,
                                           SRR26643290.26511.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-160               JAXUCZ010000007.1  91335047-91335206
            161-307             JAXUCZ010000007.1  91339452-91339598
            308-423             JAXUCZ010000007.1  91345472-91345587
            424-602             JAXUCZ010000007.1  91349257-91349435
            603-754             JAXUCZ010000007.1  91359620-91359771
            755-914             JAXUCZ010000007.1  91362844-91363003
            915-1115            JAXUCZ010000007.1  91364856-91365056
            1116-1292           JAXUCZ010000007.1  91367885-91368061
            1293-1372           JAXUCZ010000007.1  91369916-91369995
            1373-1519           JAXUCZ010000007.1  91370082-91370228
            1520-1653           JAXUCZ010000007.1  91377565-91377698
            1654-1787           JAXUCZ010000007.1  91379227-91379360
            1788-1967           JAXUCZ010000007.1  91379893-91380072
            1968-2200           JAXUCZ010000007.1  91380954-91381186
            2201-2353           JAXUCZ010000007.1  91381621-91381773
            2354-2489           JAXUCZ010000007.1  91383664-91383799
            2490-2582           JAXUCZ010000007.1  91386360-91386452
            2583-2723           JAXUCZ010000007.1  91388707-91388847
            2724-2918           JAXUCZ010000007.1  91389906-91390100
            2919-3039           JAXUCZ010000007.1  91391629-91391749
            3040-3135           JAXUCZ010000007.1  91394114-91394209
            3136-3475           JAXUCZ010000007.1  91396095-91396434
FEATURES             Location/Qualifiers
     source          1..3475
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q33"
     gene            1..3475
                     /gene="Tbc1d31"
                     /gene_synonym="Wdr67"
                     /note="TBC1 domain family, member 31"
                     /db_xref="GeneID:299949"
                     /db_xref="RGD:1587370"
     exon            1..160
                     /gene="Tbc1d31"
                     /gene_synonym="Wdr67"
                     /inference="alignment:Splign:2.1.0"
     CDS             84..3269
                     /gene="Tbc1d31"
                     /gene_synonym="Wdr67"
                     /note="WD repeat-containing protein 67; WD repeat domain
                     67"
                     /codon_start=1
                     /product="TBC1 domain family member 31"
                     /protein_id="NP_001128314.1"
                     /db_xref="GeneID:299949"
                     /db_xref="RGD:1587370"
                     /translation="MQSTNLGNKESGKIWHRKPSPATHNGIIVNVVHSTSEYHPKVLR
                     FLNVAFDGSGDSFIAGDHQGNIYVFDLHGNRFNLVQRTAQACTALAFNLRRKSEFLVA
                     LADYSIKCFDTVTKELVSWMRGHESSVRSISVHTSGRYAITTSSDTAQLWDLDTFQRK
                     RKLNVRQSVGIQKVFFLPLSNTILSCFKDNSIFAWECDTLFCKYQLPGPPEGCNILYK
                     VFAVTRDGRILAAGGKSNHVHLWCLEATQLFRIIQMPTKVRAVRHLEFLPDSFDAGSN
                     QVLGVLSQDGIMRFVNIQTCKLLFQIGTVEEGVSSSVISPHGRYITAIMENGSLNVYS
                     VQALTQEINKPPPPLVKVIEDLPNNTVSSNNLKVKVMSGRVQRPARCKERKNQTRVLK
                     QDLTGNLENKENELSEGLNKKRLQVLLKGYGEYPTKYRMFIWRSLLQLPENHTAFSSL
                     MDKGTHAAYLDLQKKYPIKSRRLLRVLQRTLSALAHWSAIFSDMPYLPLLAFPFVKLF
                     QNNQLICFEVVATLIINWCQHWFEYFPNPPINILTMIENVLAFHDKELLQHFIDRDIT
                     SQVYAWPLLETLFSEVLTREEWLRLFDNIFSSHPSFLLMTVVAYNTCSRAPLLNCTLK
                     DDFEYFFHHRNNLDLNVVIREVYHLMETTPADIHPNSMLDAFVALTKGQYPIFNQYPK
                     FIVDYQTKERERIRNDELDFLRERQTVENMQAEVDEQRAKDEAWYQKQEMLRRAEETR
                     REMLLQEEEKMAQQRHRLAAVKRELEIKEIHLQDAARRRLLKLQQDQREMELRRLEDE
                     IERKVQMRDQEIAATAKDLEMRQLELEARKRLYEKDLTASQEAIAKGIREDTDAHRRK
                     MVLEEHVFQKLLENSQMGSRRTPRVMEDNLAKAEQACLNADWQIQTLHKQNREDRQRS
                     EGYYEVATLLRKDRQKEIQVLDAMMEEEAKKWKEAREKEFHLQSEKKASALSDASRKW
                     FLGQETNAALEHEEVPWLQKQHMDSTCLPQTLRLNDVSDMDSSTQIFSRDKPTEWNHT
                     ESDLLKNVRDLRRGLTARARSSCPRPHLLVT"
     exon            161..307
                     /gene="Tbc1d31"
                     /gene_synonym="Wdr67"
                     /inference="alignment:Splign:2.1.0"
     exon            308..423
                     /gene="Tbc1d31"
                     /gene_synonym="Wdr67"
                     /inference="alignment:Splign:2.1.0"
     exon            424..602
                     /gene="Tbc1d31"
                     /gene_synonym="Wdr67"
                     /inference="alignment:Splign:2.1.0"
     exon            603..754
                     /gene="Tbc1d31"
                     /gene_synonym="Wdr67"
                     /inference="alignment:Splign:2.1.0"
     exon            755..914
                     /gene="Tbc1d31"
                     /gene_synonym="Wdr67"
                     /inference="alignment:Splign:2.1.0"
     exon            915..1115
                     /gene="Tbc1d31"
                     /gene_synonym="Wdr67"
                     /inference="alignment:Splign:2.1.0"
     exon            1116..1292
                     /gene="Tbc1d31"
                     /gene_synonym="Wdr67"
                     /inference="alignment:Splign:2.1.0"
     exon            1293..1372
                     /gene="Tbc1d31"
                     /gene_synonym="Wdr67"
                     /inference="alignment:Splign:2.1.0"
     exon            1373..1519
                     /gene="Tbc1d31"
                     /gene_synonym="Wdr67"
                     /inference="alignment:Splign:2.1.0"
     exon            1520..1653
                     /gene="Tbc1d31"
                     /gene_synonym="Wdr67"
                     /inference="alignment:Splign:2.1.0"
     exon            1654..1787
                     /gene="Tbc1d31"
                     /gene_synonym="Wdr67"
                     /inference="alignment:Splign:2.1.0"
     exon            1788..1967
                     /gene="Tbc1d31"
                     /gene_synonym="Wdr67"
                     /inference="alignment:Splign:2.1.0"
     exon            1968..2200
                     /gene="Tbc1d31"
                     /gene_synonym="Wdr67"
                     /inference="alignment:Splign:2.1.0"
     exon            2201..2353
                     /gene="Tbc1d31"
                     /gene_synonym="Wdr67"
                     /inference="alignment:Splign:2.1.0"
     exon            2354..2489
                     /gene="Tbc1d31"
                     /gene_synonym="Wdr67"
                     /inference="alignment:Splign:2.1.0"
     exon            2490..2582
                     /gene="Tbc1d31"
                     /gene_synonym="Wdr67"
                     /inference="alignment:Splign:2.1.0"
     exon            2583..2723
                     /gene="Tbc1d31"
                     /gene_synonym="Wdr67"
                     /inference="alignment:Splign:2.1.0"
     exon            2724..2918
                     /gene="Tbc1d31"
                     /gene_synonym="Wdr67"
                     /inference="alignment:Splign:2.1.0"
     exon            2919..3039
                     /gene="Tbc1d31"
                     /gene_synonym="Wdr67"
                     /inference="alignment:Splign:2.1.0"
     exon            3040..3135
                     /gene="Tbc1d31"
                     /gene_synonym="Wdr67"
                     /inference="alignment:Splign:2.1.0"
     exon            3136..3475
                     /gene="Tbc1d31"
                     /gene_synonym="Wdr67"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggggactgct gggaagctct cgggacggtt accccatcgg gtcagctgta gtccagagtc
       61 gggggggggg cgggggattc gacatgcaga gcactaacct gggcaacaag gagagcggca
      121 agatatggca ccgcaagcca tcgccagcca ctcacaacgg aattatagtg aatgttgttc
      181 acagcacctc tgaataccat ccgaaagtct tgcggttctt gaatgtggct tttgatggct
      241 caggagattc cttcattgct ggggaccatc aggggaacat ctatgttttt gacttgcatg
      301 gaaacaggtt taatcttgtt cagcgaacag cacaagcatg cacagctctg gcctttaatc
      361 ttcgtaggaa gtctgagttc cttgtggcat tagctgatta ttctattaaa tgttttgata
      421 cagtcactaa ggagctggtt agctggatga gaggacatga atcgtctgtg cgttccattt
      481 ctgtgcacac atctgggaga tacgccatta cgacttcctc tgatacagct cagctctggg
      541 acttggatac cttccagagg aaaaggaagc tgaacgtccg ccagtccgtg gggatccaga
      601 aggttttctt tctaccatta agtaacacca tcctcagttg ttttaaggac aactccatct
      661 tcgcctggga atgtgacact ctgttttgca agtaccaatt gccaggtcca cctgaaggct
      721 gtaacatctt atacaaagtg tttgcggtga ccagagatgg ccgaatcttg gctgctggag
      781 gcaaatccaa tcacgtgcat ctgtggtgct tggaggccac acagctcttc agaatcattc
      841 agatgcctac gaaggtacga gctgttcgcc atctggaatt cctgcctgat agctttgatg
      901 ctggctccaa tcaggtgctt ggtgtgctaa gtcaagatgg gattatgagg tttgtcaaca
      961 tacagacttg taaacttctc tttcaaatcg ggactgttga agaaggagtt agctcatcag
     1021 taattagccc acacggtcgc tacataacag ctatcatgga aaatggaagt ctgaatgtgt
     1081 attcagtcca ggctttaaca caagaaataa ataagcctcc tcctcctcta gttaaggtga
     1141 ttgaagattt gcctaacaat acagtgagtt ccaataatct gaaggtaaaa gtaatgtcag
     1201 gaagggtaca gcgcccagca agatgtaaag agaggaaaaa tcaaactaga gtactcaagc
     1261 aggacctgac tgggaactta gaaaacaagg agaacgaatt gtcagaagga ctaaataaaa
     1321 agcgcttgca agtcttatta aaaggctatg gggaatatcc aacaaaatac aggatgttta
     1381 tttggcgttc cttgctacag ctgcctgaaa accacactgc gtttagtagc ctgatggata
     1441 aagggaccca cgcggcctat ctcgaccttc agaagaaata ccccatcaaa agtagaaggc
     1501 tgctgagagt actacagaga accctgtctg cattagctca ctggtctgca atcttcagtg
     1561 acatgccgta tcttccactt ttggcatttc catttgtaaa attattccag aacaatcagc
     1621 tcatctgttt tgaagttgtt gctactctca taatcaattg gtgtcaacat tggtttgagt
     1681 actttcccaa tcctcccatc aatattctta ctatgataga aaatgttttg gcatttcatg
     1741 acaaggaact gctacagcac ttcatagacc gtgatataac ttcccaggtg tatgcctggc
     1801 ctctccttga aacgttgttc tctgaagtgc tgacaagaga ggagtggctt cggttgttcg
     1861 ataatatctt ctccagtcac ccttccttcc tcctgatgac cgtggtggcc tacaatacct
     1921 gttctagagc gcctttgctc aactgcactc ttaaggatga ttttgagtac ttttttcacc
     1981 atcggaataa cctggactta aatgttgtaa ttagagaagt ttatcatctc atggagacca
     2041 cgcctgctga tattcatcca aatagcatgc tggatgcttt tgttgcacta acaaaagggc
     2101 agtatcctat atttaatcaa tatccaaagt tcattgtgga ctatcagaca aaggaacggg
     2161 aaaggataag gaacgatgaa ctggactttt tgagagagag gcagacagtt gaaaatatgc
     2221 aagctgaagt ggatgagcag agagctaagg atgaggcgtg gtaccagaag caagagatgc
     2281 tccgtagagc tgaggagaca agaagagaga tgcttcttca agaggaggag aagatggccc
     2341 agcagagaca caggctagct gctgtgaaaa gggaactgga gataaaggaa atacacttac
     2401 aggatgctgc aagaagacgt ttgctaaagc ttcagcaaga tcaacgtgaa atggagctac
     2461 gcaggctgga agatgaaatt gagagaaagg tacaaatgag agatcaagaa attgctgcca
     2521 cagccaaaga cctggaaatg agacagctgg aactggaagc acggaaacga ctttatgaaa
     2581 aggatcttac tgcaagtcag gaggccattg ccaagggaat tcgagaagac acagatgcgc
     2641 acaggcggaa aatggttctc gaagaacacg tgttccagaa gctgctagag aacagccaga
     2701 tggggagcag aaggactccg agggtgatgg aggacaattt ggcaaaggcg gaacaagcct
     2761 gtctgaatgc tgactggcag attcagactt tacataagca gaatcgtgag gatcgacagc
     2821 gcagcgaggg ctactatgag gtcgccactc tcctccgcaa ggacagacag aaagaaatcc
     2881 aagtgttaga tgcaatgatg gaggaggagg ctaagaagtg gaaggaagcc agagagaagg
     2941 aattccattt gcaatcagaa aagaaagcct ctgccctttc agatgcctct agaaagtggt
     3001 ttttagggca ggagacaaat gcagctttgg aacatgaaga agtgccttgg ttacaaaagc
     3061 aacacatgga ctcaacctgc ttgcctcaaa ccttacgatt aaatgatgtt tccgacatgg
     3121 attcctcgac acagattttt tcaagagata agccaacaga atggaaccac acggaatccg
     3181 atcttctcaa gaatgtgcga gatcttcgca ggggactcac agcccgggct cggagcagct
     3241 gtccgcgccc tcatcttttg gtgacataga aggcatttca ccatgaagca atcagagata
     3301 tcttttttaa atcagtggca ctcattttcc aattatttat tctaattttt gtaacgatca
     3361 gccttttgta tagagaaata tatctataaa attatgtttt tattgaatta taatgctttg
     3421 gcttgtaaag ggcttctaga atatttcaca taaagctttt tggaaattat caaaa
//
