LOCUS       XM_039080139            5719 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus TBC1 domain family, member 30
            (Tbc1d30), transcript variant X1, mRNA.
ACCESSION   XM_039080139
VERSION     XM_039080139.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039080139.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5719
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5719
                     /gene="Tbc1d30"
                     /note="TBC1 domain family, member 30; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 17
                     ESTs, 3 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 19 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:299824"
                     /db_xref="RGD:1305255"
     CDS             156..2996
                     /gene="Tbc1d30"
                     /codon_start=1
                     /product="TBC1 domain family member 30 isoform X1"
                     /protein_id="XP_038936067.1"
                     /db_xref="GeneID:299824"
                     /db_xref="RGD:1305255"
                     /translation="MVKDFVELPGRSGSGGKEDSGAAPADVKPELRASAHWLAFRPLP
                     GTLYCPRGRALTELADAAAVRVMEVLPAGRMWDSQQAEEAAGHPAGEGDPEPQPDGRT
                     SRTASLVSGLLTELYSCTEEEDVAAGGDRSQGRPLRKDSLDSSTETSGSDVFLGGRGA
                     GDSRVLQELRERPSLRLQMQYLERKDSSELKTILRELKSRVGIQSAKLLRQLKQKDRL
                     LHKVQKNCDIVTACLQAVSQKRRVDTKLKFTLEPSLGQNGFQQWYDALKAVARLSTGI
                     PKEWRRKVWLTLADHYLHSIAIDWDKTMRFTFNERSNPDDDSMGIQIVKDLHRTGCSS
                     YCGQEAEQDRVVLKRVLLAYARWNKNVGYCQGFNILAALILEVMEGNEGDALKIMIYL
                     IDKVLPESYFVNNLRALSVDMAVFRDLLRLKLPELSQHLDTLQRTSNKESGGGYEPPL
                     TNVFTMQWFLTLFATCLPNHTVLKIWDSVFFEGSEIILRVSLAIWAKLGEQIECCETA
                     DEFYGTMGRLTQEMLEHDLLQSHELMQTVYSMAPFPFPQLAELREKYTYNITPFPATI
                     KPTSVSGRHSKSRDSDDENGPDDEDAVASAVGCLGPLSGLLAPELQKYQKQIKEGTEE
                     QTLRSNNIAELSPGAINSCRSEYHAAFNSMMTERMTTDINALKRQYSRIKKKQQQQLH
                     QVYIRADKGPVTSILPSQANSSPVINHLLLGKKMKITNRAAKNAVIHMPGHAGGKISP
                     VPYEDIKTKLNSPWRTHIRVHKKNMPRTKSHLGCGDTVGLIEEQNEGCKTSSLGAAEE
                     FPSSCAVTAQSEGSSGDSVTPRTIEGQSPEPVFGDADVDVTAVQVKLEALELNQRDTT
                     AETESKGQRHAPELVDAPGENQTVSKSLPGSNSKPPIFSPFPSVKPLRKSATARNLGL
                     YGPTERTPTMHFPQMSRGFSKSGMGSSSTKKR"
ORIGIN      
        1 gtcaaaatta gctctggcga ctttcattaa ctctgccaac tcacgaaggc ttgttaaacc
       61 cacagtcagt gtcacggaat ttcgttgatc tgaatccagg tcttttattg gaggaaaaag
      121 gttcacaacg tcactaaagt cccaggactt gccagatggt caaggatttt gtggagcttc
      181 ctggacgctc cgggtcaggt gggaaggagg actcgggcgc ggcgcccgcg gacgtgaagc
      241 cggaactccg ggcctccgcc cattggttgg catttcgacc cctgccgggg actctttact
      301 gcccgcgtgg ccgcgccctc acggaactgg cggacgccgc tgcggttcga gtcatggagg
      361 tccttcccgc gggcaggatg tgggactcgc agcaagccga ggaggcggcg gggcacccgg
      421 cgggtgaggg cgacccggag ccgcagcccg acggccgcac cagccgcacg gcgtccctag
      481 tgagcgggct gctcacggag ctctacagtt gcacagagga ggaggatgtg gcagccggtg
      541 gggaccggtc ccagggccgc cccctgcgca aggacagcct ggacagctcc actgagacct
      601 cgggttccga cgtgttcctg ggcggccgcg gcgctggcga ctcccgagtg ctgcaggagc
      661 tgcgggagcg accgagcctg cggctccaga tgcagtacct ggagcggaaa gactccagtg
      721 agctgaagac cattcttcgc gagctaaagt ccagggttgg catccagtcg gcaaagttac
      781 tccggcagct gaagcagaaa gacaggcttt tgcataaagt tcagaagaac tgcgacattg
      841 tgaccgcctg cttgcaggct gtgtcacaga agagaagagt tgatacaaaa ttgaagttca
      901 cacttgaacc atctttgggt caaaatggtt ttcagcagtg gtatgatgct ctcaaggcag
      961 ttgccagact gtcaacgggg atcccgaagg aatggaggag gaaagtttgg ttgaccttgg
     1021 cggatcacta tttgcatagt atagccatcg actgggacaa aaccatgcgc ttcactttca
     1081 acgagaggag caaccccgat gacgactcaa tggggattca gatcgtcaag gatctgcatc
     1141 gcacgggctg tagttcctac tgtggccagg aggcggagca agacagggtg gtactaaaga
     1201 gggtgctatt ggcttacgcc cggtggaaca agaatgtcgg gtactgtcaa ggcttcaaca
     1261 tcctggctgc cctcattctg gaagtgatgg aaggcaacga gggggacgcg ctgaagatta
     1321 tgatttacct gattgataag gtgctccctg aaagctactt tgtcaataat ctccgggcac
     1381 tgtctgtgga tatggctgtc ttcagagacc tcctgcgact gaagctccct gagctgtctc
     1441 agcacctcga cactcttcag agaacttcaa acaaagagag cggaggcgga tatgagcccc
     1501 cgctcaccaa tgtcttcacg atgcagtggt tccttacgct ctttgccacg tgcctcccta
     1561 accacacggt tctgaagatc tgggactcag tattctttga aggttcagag atcatcctga
     1621 gggtgtcgct ggctatctgg gcaaaactgg gagagcagat agaatgttgt gaaacagcag
     1681 acgagttcta cggtaccatg gggcgcctta cccaggagat gctggagcac gatctcttgc
     1741 agagccatga gctcatgcag acagtgtatt cgatggcccc attccctttc ccgcagttgg
     1801 cggagttgag ggagaagtat acctacaaca ttacaccatt tccagccaca atcaagccca
     1861 cttcagtttc tgggcgacac agtaagtcca gagatagtga cgatgagaac ggcccggacg
     1921 atgaggatgc tgtcgctagt gctgtggggt gccttggacc gctcagtggg ctcctggctc
     1981 ctgaactgca gaagtaccaa aagcagatta aagaagggac agaggaacag accctgaggt
     2041 cgaacaacat cgcagagctg agcccaggag ccatcaattc gtgtcgaagt gagtaccacg
     2101 cagcgttcaa cagcatgatg acagagcgga tgaccacgga catcaacgcc ctgaagaggc
     2161 agtactcgcg cattaagaag aagcagcagc agcagctcca ccaggtgtac ataagagcag
     2221 acaaagggcc agtgaccagc atcctcccat ctcaggcaaa tagttctccg gtgatcaacc
     2281 atcttcttct agggaaaaag atgaaaatta caaacagagc agccaagaat gcagtcatcc
     2341 acatgcctgg ccacgcggga ggaaaaatat ctcctgtccc ttacgaagac attaagacaa
     2401 agctcaactc tccgtggcgg actcacatcc gagtccacaa aaagaacatg ccaaggacca
     2461 agagccatct gggctgtgga gacacagtag ggctaataga agaacagaat gaaggctgta
     2521 agaccagcag cttgggggca gctgaggagt ttccctccag ttgtgcagta acagctcaga
     2581 gtgagggcag cagcggtgac agcgtcactc cgaggacaat cgaagggcag tctccagagc
     2641 ccgtatttgg ggatgctgac gttgatgtga ctgcagttca ggtgaaatta gaagccttgg
     2701 aacttaacca aagggatacc acggcagaaa ctgagtccaa ggggcagcgg catgccccag
     2761 agttagtcga tgcccctgga gaaaaccaga ctgtcagcaa atctctcccg ggaagcaact
     2821 caaaaccccc catcttcagc cccttcccca gtgtcaagcc gctgcgaaag tcagccacag
     2881 ccaggaattt gggattatat ggccctaccg aaagaacccc aaccatgcac ttccctcaga
     2941 tgagcagggg cttcagcaag tcaggcatgg ggagcagcag caccaagaag cgatgacgcc
     3001 tcctagtggt tggctcagcg gctagactca caaggcgagg catggtggct aaagcaagct
     3061 agccaggccc ttcctgtttc atttgtccaa taaaaaacga actgagaggt ttaaagctga
     3121 gcgccaacag ccctatccaa acgggtaccg gaagctccgt ggtgggaacc agatgggacc
     3181 ttttcccacc ttctgggtaa ctggtcaagt ggattcttgt gactaaataa atctcgtgct
     3241 tctcaagtat ggagtttccc caattttcct tgtgagctct ttagaaaaga caatctgtag
     3301 actgttaagt ccttttctgg ccttctcaga gcctttttgg gatccctgaa acaacacatt
     3361 ccttggcctt tccgtcctct ggacgtcact tactaaagca tgaacgaata ccagcttgct
     3421 agaactaaaa ccgtagaaag taagcttctt agttgcaaaa aacttctgat gttcctcttt
     3481 ctgctctgtt ggggacggga ggggatttgt gtgtgtatga gcaagagtgc ctgtgtgtgc
     3541 gtgtgtgagc atgtgcaagc atgtgtgtgt gtgtgtgtgt gtgtgcgtgc gtgcgtgcgt
     3601 gcatgcacgc gcctgtatac tttaatactt gtcttcagat tattttttat ttatatgcta
     3661 aagcatagca gaaatgtcaa gatagccttt ctgtaacttt ctatttctac ccgtgagaag
     3721 aaaaccttta aatcagttga aattgaagtt aataaccaaa tcgaagacca tatgcagaga
     3781 tcaccttggg ctatgcatta aacagctact ctgaacggtt tgctgatttc cacctttccc
     3841 aaggctcatt ttcttctcgc aaggatttga tgggctctgt gtggaacttg agcatcctct
     3901 gaacgtggtt ccgatagcta ccagctctca ctccattgca gatgcgcagc tcaaagccag
     3961 gacaccgcac agtgactgtt acttgaattt tgtggttttg ggttgtggta ctttgttact
     4021 tgaacactgc ctttctctgg agaagcccct cttcccctag ttctttctat ctttccactc
     4081 ctaccttggt cccagcagat cggagagagc atctcttgtc tttactatgc agtccggaac
     4141 tctgagccac acaggtgaaa cggcacttca gtaactcgag gtaaacaatc cagtgtgtca
     4201 caggacctca ctctgtttct tctagtacga taacctggct tactgctctt tgtccacgag
     4261 tactgacttc agagcttgtg ggagctgcga ctaggaagcc atttaataca cagcctcctg
     4321 actcaaaggc tctttctcta gatggtatag agtcctgtgt tcacagaagg agctgtgaaa
     4381 ctgcctcacc ttgaaaagtt agttcctttt caacatgctt catgcgtcta tcctttggaa
     4441 aaatgaaggg ctctccactc aggctccgcc gtcattagcc caatacggcg ccatcttaac
     4501 cttccttccc caaagccttt ggcagttctg ggaggaactc tgttgaagcc ggtagcgttg
     4561 gttcgagtga gttgctttgc tatttctgaa gccagggctg gttacagaag gttttttttt
     4621 tttacaatga gaagtactca ttttttaatc acatagagta gagttgtgtg ggctcttttg
     4681 aatgaaaagc tgctacagga ctgacacatt ttatccccca catagtattt ttaccggaaa
     4741 ggaccggaag atggaatagc tagaagtcat tacagtttgt ttggtcctgg agttctatct
     4801 gaagttatca gacagcttcc tctgcctgga gggaaggccg tgggtggggg tgggtggcct
     4861 tactttgaat gccatcccca ggtgatgcga cccactgttt tccaaagtta agcacaagaa
     4921 aagaatttct tttatccact aaacttcatt tacaatgacc ccctcattat cttctttttc
     4981 cttgataatt caaatccccc cacaccctct ggaagcctga cttgaataga aaatgtttct
     5041 ctcccaaccc agtaacctgg ctccctgagg gtctgggtgt ttggagggag gagatgggaa
     5101 atcaggtggg gctgtctacc aactgttctc tcagtatctc ttcctgctat gtcttcagaa
     5161 agagcccggt gagacagcac agggtatgga tgagtatcag ttgtacaaat agctgggaga
     5221 aaaaacattt ttttttttgg tggtaaaaat gaccaagtcg acttaggaaa cccaacagac
     5281 ccctgttaaa gctctctgta ctgaccatgc gcatgcacca tgccaggcaa tcacaatgtg
     5341 aactgatgga cttcttagcc ttgccactta gaacaagaac tctgtaatag cctcccctcc
     5401 cccaacccgc agcatgtaca aagggggcgg atatggactg gccgtcttcc ccaagtgtcg
     5461 gagactgtat gcgaacaccg gaagaactta atagttgcag ctatttccaa gtctgcctgt
     5521 acccttttca cacttttctg gacatcaact gcacctcagt cctctccaaa aaaaaaaaaa
     5581 aaaaccgatc tagatctaaa cctagtttgt aatgttgacc tatggctgta actgtttgga
     5641 acgatgttct ctctctcatc tgtcttgttc tggagaactg tactgatcac agataatatg
     5701 cataaagatt ctcactgtt
//
