LOCUS       XM_039087516            7090 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus TBC1 domain family, member 16
            (Tbc1d16), transcript variant X1, mRNA.
ACCESSION   XM_039087516
VERSION     XM_039087516.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086028) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7090
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..7090
                     /gene="Tbc1d16"
                     /note="TBC1 domain family, member 16; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     ESTs, 123 long SRA reads, 4 Proteins"
                     /db_xref="GeneID:303734"
                     /db_xref="RGD:1588560"
     CDS             183..2480
                     /gene="Tbc1d16"
                     /codon_start=1
                     /product="TBC1 domain family member 16 isoform X1"
                     /protein_id="XP_038943444.1"
                     /db_xref="GeneID:303734"
                     /db_xref="RGD:1588560"
                     /translation="MSLGRLLRRASSKASDLLTLTTGGSGGSLSVLDGEVIYSKNNVC
                     VHAPEGLQGPGEHHPGYLCLYMEKDELLGATLILAWVPNSRIQRQDEEALRYITPEGS
                     PVRKAPRPRRRRTTSLGATYQPSPTEPRPPLIPKDEDILVVVQNTQDSVHISPTDEDG
                     VKLAQGPEVDGPLPTSQPVHSDSGILSTVSSQDGTENGREPRPEAVEEEGSLELSADG
                     VSRDSSFDSDSDAFSSPFCLSPISAALAEGNSSAFLESEGSSPSSSDANLRFPDSNGL
                     LQTPRWDEPQRGCALEQICGVFRVDLGHMRSLRLFFSDEACTSGQLVVASRESQYKIF
                     HFHHGGLDKLSEVFQQWKFCTETHLRDQVTDERTCMQFSIRRPKLPSSEIHPEESLYR
                     RLDVSAWLNHLNDLGQVEEEYKLRQAIFFGGIDVSIRGEVWPFLLHYYSHESTSEERE
                     ALRSQKRKEYAAIQQKRLSMPPEEHRAFWRNVQFTVDKDVVRTDRNNQFFRGEDNPNV
                     ESMRRILLNYAVYNPAIGYSQGMSDLVAPILAEVLDESDTFWCFVGLMQNTIFVSSPR
                     DEDMERQLLYLRELLRLTHQRFYQHLVSLGEDGLQMLFCHRWLLLCFKREFPEGEALR
                     IWEACWAHYQTDYFHLFICVAIVAIYGDDVIEQQLATDQMLLHFGNLAMHMNGELVLR
                     KARSLLYQFRLLPRIPCSLHDLCKLCGTGMWDSGYMPAVECAGHHPGSESCPYGGTVE
                     TPSPKPPREGKKGPKAPREAFGFRR"
     polyA_site      7090
                     /gene="Tbc1d16"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 gcggggccgg cctctccaca tcccctcccc gccgcgcctc gctagcggcg gcggtggcag
       61 tggcggcggc agcggctgtg gctcctggag ccggcgcgtg tccagccctc gcggcgggac
      121 ccgggtcctg acaagccctg cctgggccca agtgcgcgga ggatggaaac gtgcgttcgg
      181 ccatgtctct gggccgcctc cttcgtcggg cctcctccaa ggcctcggac ctcctgaccc
      241 tcaccaccgg gggcagtggc gggtccctct ccgtcctgga tggagaggtc atctactcca
      301 agaacaatgt ctgcgtgcac gcacccgagg ggctgcaggg ccctggggag caccatccag
      361 ggtacctgtg tctgtacatg gagaaagatg agctgctggg ggctaccctc atcctggcat
      421 gggtccccaa ctctcgcatc cagaggcagg acgaagaggc cctacgctat atcacccccg
      481 agggctcccc tgtgcgcaag gcacctcgtc ctcgaaggcg tcgcaccaca agcctggggg
      541 ccacctacca accctctccc acagagccaa ggcctcccct gattcccaaa gacgaggaca
      601 tcctggtggt ggtccagaac acgcaggatt ctgtgcacat cagccctaca gacgaagatg
      661 gggtaaagct ggcccagggc ccagaggtgg atgggcccct gcccacctca cagcctgtgc
      721 atagtgactc tgggatcctg tctacagtca gctcccagga tgggacggag aatggccggg
      781 agccacggcc cgaggctgtg gaggaagagg gctccttgga gttgtcagct gatggcgtga
      841 gccgggatag ctcctttgac tcagactctg acgccttctc ctcgcccttc tgcctctccc
      901 ccatcagtgc ggccctggcg gaggggaaca gctctgcatt cctggagagt gagggcagct
      961 ccccctccag ctccgatgcc aacctgcggt tccctgacag caatggcctc ctgcagacgc
     1021 ctcgctggga cgaaccacag aggggatgtg ctctggagca gatctgtgga gtgttccgcg
     1081 tggacctggg ccacatgcgc tccctgcggc tcttcttcag cgacgaggct tgcacgagtg
     1141 gtcagctggt ggtggccagc cgagagagtc aatacaagat tttccacttt caccacggcg
     1201 gcctggacaa gctctccgag gtgttccagc aatggaagtt ctgcacagag acacacctca
     1261 gggaccaggt cacggatgag aggacgtgca tgcagttctc catccgaagg cccaagctgc
     1321 catcctctga aatccacccg gaggagagcc tgtaccggag gctggatgtg tccgcctggc
     1381 tcaatcacct gaatgacctg gggcaggtgg aggaggaata caagctacgc caggccattt
     1441 tctttggtgg cattgatgtg tcgatccggg gggaggtctg gcctttcctt ctgcactatt
     1501 atagccacga gtccacgtcg gaggaacgtg aggcgcttcg gtcgcagaag cgaaaggaat
     1561 atgcagctat ccagcaaaag aggctctcca tgcctcccga ggagcacaga gccttctggc
     1621 gtaacgtgca gttcactgtg gacaaagacg tggttcggac agataggaac aaccagttct
     1681 tccgagggga ggacaatccg aacgtggaga gcatgaggag gatcctgctg aattacgctg
     1741 tgtacaaccc agccatcggc tactcacagg ggatgtcaga tctggtggcg cctatcttgg
     1801 ctgaggtctt ggatgaatca gacaccttct ggtgcttcgt gggtttgatg cagaacacca
     1861 tctttgtcag ctctccccgg gacgaggaca tggagagaca gctgctgtac ctgcgggagc
     1921 tgctccggct gacacaccaa cgcttctacc aacacctggt ctctctgggt gaggacggcc
     1981 tccagatgct cttctgtcac cgatggctcc ttctctgctt caagcgggag tttcctgagg
     2041 gcgaggccct gcgcatctgg gaagcctgct gggcccacta ccagacggac tatttccacc
     2101 tgttcatctg tgtggccatt gtcgccatct acggggatga cgtcatcgag caacaactgg
     2161 ccacggatca gatgctcctg cacttcggaa acctggccat gcatatgaac ggagagttgg
     2221 tgctcaggaa ggccaggagt ctcctgtacc agttccgcct tctgccacgc atcccatgca
     2281 gcctacatga cctgtgtaag ctgtgtggga caggcatgtg ggacagtggg tacatgccag
     2341 ctgtggaatg tgccggccac cacccgggct cagagagctg tccctatggg ggtacagtgg
     2401 agacaccatc acccaagcct ccaagagaag gcaagaaagg cccaaaggca ccacgggagg
     2461 cctttggttt ccgaagatag aaaagctcct gcccttgacc atgggcgagg ggacctccat
     2521 gaggtccttg ggcaaggggg agggggaggg gatggatgtg gagaggacac gaggaaaagc
     2581 ttctggccag tcatgatgac aaaatcgggc tccagaactg acagcagata tcagctgtcc
     2641 aaagaactca gctcctgaaa ggctagccca ggatgtctgg ctagccactg gatgctagat
     2701 gcaagcacct tgagggattc cagcagaggc caggaggctc tccacaagct gtgggcaggg
     2761 cgggactagg taaggcctcg tcctcacacc agcaccaagg gacacagagg agcaggactg
     2821 ttgtctgagt gagtcgagca tacttgcgaa gcttcttggt cacagctgca agactggtat
     2881 gaagaagatg cctgtctaag aaagacagga aaaaagggag ggagggaggg agagagggtg
     2941 gggtaagaaa agctgtggga gcaggtcttt aggcctgggc ttctcacagt gccccggtga
     3001 gtgttgtgtg cgctcctacg tatgggaagg acatgcctac cctgagccag aggagcaggc
     3061 tggtagacaa gtgtcaggtg caccctccac tggggtcctc ccctgaggat gtaaggtttg
     3121 tcttcgctac cagaaacggc aacccactgg ggcctgaatg ggttgacgag tgtggtatgg
     3181 gaaccacaag gtcctctgaa tacttggtcc tggagaaggg gaagtatatc actccccagc
     3241 caagacaaag gcatctgaca tggctgggga ggtgtctctg ccaccatgca gggcctaggg
     3301 gacttctatt ccttggttta gccctagctg agcaacacca ggatgctctt cctcttaaga
     3361 aggaaacagt cacgcccaca ctccatccaa agctggggac tgtgcttgga taaaggtgtg
     3421 ttccaaagca ttcctagcca gtgtcccaga aactggtgca agcaaggagc ctggattcct
     3481 ccacaaaggg ctgaatcctc atagtgggta caggcggcag ggtgggtgga ggtgccctgc
     3541 tttttgggtt ttctcactga gagtggtgct gcgggacggt gccacgtcta aaaggtgctg
     3601 accagaacga gaaggggcga agcctcagaa taagaggagg cagcgagatg ggcgtgtcct
     3661 cagaataggg ggaggagcct aataatgagg gcggagtctc tgaacgagaa aggcggggcc
     3721 taggaaatga ggggcggggc atcagaatga gaggggagag gcctcagagt gagaggaggc
     3781 ctcagaatga gaatggtgga gtgtctcata ggtctccttt ctcagcttcc ctttctccat
     3841 gagttcacct cccctgcccc cgcaggtact tctaagaata tgggtccttc taggaagagc
     3901 ctttggaaga ggatgtcctg atcttggggg gtggggggcg tactctccgt tgtgagcgac
     3961 cgtgccatcc tgggagtgac ctttccactg aattgctttc tatactgact tctgatcctt
     4021 tctggaagct agagccacaa acaggtatat ccaccgcctg tcacccgggg aacagaaata
     4081 acagggcaga gcctcagtga cctagaactc tgtgcacctg gctggcacag agactgggcc
     4141 tgcagtccag gctgggtggt tctcgtcttg ggtggtttgg ctcattactt ctggggttgt
     4201 caccatctct gagatccctg tgggtaggta tatgggtgtg agacagcact ctggcctctg
     4261 ggccttaggt caccctatga cagtggaggc agaaatggat ggtgtttttg taagtgcata
     4321 cccactcgct aaccacgaca ccatccaatc aagttgaatg gctgaagtca acaactagca
     4381 ttgggaatgc aaacctttgt ttcggggcct tcttgtggta gtcatgtgac agaagcttgg
     4441 taattcagag ggattccaca agcccaccac cccaggaaat ctggacacag atccctcttt
     4501 tccaggaagg aaccaactcc ttccctagcc ctccccagta cttttgtact gcaccccagt
     4561 atctacactt tgctgtgttg ggtggggaca gcaggagcag atccagagtc tcgcttgccc
     4621 tggagcatct cagtcagaga gcatttattc taagtctcta gctctcacag gtcccccctc
     4681 ctactgctcc ccaagacctg acccaggctg ttcaatgaca gccttgtgcc aggcatcccc
     4741 tctagtccta tggactactg gaccccggtg ttgcctcagc gtcaggccag ctggagcctc
     4801 tgcagccaga catggtgtgt gggctctcgg agctctgccc tgctctgagg agcagagagg
     4861 ccccgcacag aacagcaacc ttaatctgga tgcaattaga ggaaaccagc caaatgccct
     4921 gtggcagctg ttaccccagg attgttcccg gccagcaaaa ggcattagag tgataattca
     4981 gtcattagac ttctagccgt ctcaccgcca agacgtacaa atcaagggta atcagcgtgc
     5041 gcgcgcaccg tcccctgacc acaaggctta tttaacccat ttttttttta aaagaaaaaa
     5101 aacgatgctt tatatgctac tggccagcac gtctgtgtgc gcatgccccg ccggtaatgt
     5161 ctgtgctgac gacattgcct aatgtcatca aggccctgtc atctagggct ctgggaaagg
     5221 aggacacctt tgatgtgcct gctgccaagg ctctctcgcc tctgactcac tctcctagga
     5281 gagggggcag tggaggggag ggggcagggt tggagcagaa tgtgtccgcc ttgctctgga
     5341 tgtcttcact ggggacagga aagacactgc ctccctacaa agtcccatct aagtgccagc
     5401 caggaggcct agcccatctc tgcagaggag ggctgaagcc ccagggaggc tctgttactg
     5461 agctgggcaa tctgcagaca gatctgtgtg gttgctcatc agactgacca gggaggggaa
     5521 catgttaaat tcaggagggg atggtttggg cctcagcttt tgagtgtagg acaccagccc
     5581 aaaagagggt atcctggagc cagtgccttt gatggcctgg ggcaggatgg caataaataa
     5641 gtagggagag gaacactggc tgtcaggcca gctcctgaaa ggctcctttg ccctcccgca
     5701 tgtatttgtg ttttccttgc tgctttgctg gggttttgct gtgctggagg cggggcagtg
     5761 cgtgaaactt ggggccgcac tcatgctaag ttatgagctg agcagtgcag tctgcttctg
     5821 actatgttaa tttaggtggc gatcaacccc agggtgccag gaatctgcct gggatctccc
     5881 tcccctaggt gggctccctt ccattggact gggggatgtt aggaacaccc tgggctggcc
     5941 ggacagaggg aaggaacctg gccgaggtcc ctggaggcca ccctgcctag aagggagatg
     6001 gatgagaaat cccccccccc cgaaaacgta tgcagggcta tgacctgggt cagaggtgag
     6061 tcaggactgc caccctcctg ggccaccagt gaggacacag ggaaactggc taggctgatg
     6121 ctggacctgc cagatctctg gactccctga agaaccaagt ggcctctaga tgttagtctt
     6181 gtgtttctac gggggttgta atacattttg tcctgggttg acctggtcca gcaggactgg
     6241 gataccccaa atctaagaag ccagtttccc ctagagcttc ccgcacgcag cagggagcga
     6301 ggggttcccc cagccaactt ccttgcctgt aaaaagagag cagggccctc tcacaggctt
     6361 cttcagaaga ctgctctaag gctgccatga gggtggctaa ccatggccca gggacctcac
     6421 ctgccactca gggaagagcc cactggcctt agccttccgc agcagtgacc gaaagggact
     6481 ccccactccc agtccagtgc cctccctggt ctgaagtcag tgaaccaatg cctttcctgc
     6541 acatctacct tgctgagtgt cctctgcaga gggcagatct ctctgtgacg tccattctgt
     6601 gtcacccatg cctaccctga agaaaaatga gccacaaagc cacctcagcg gtcttggtct
     6661 gcacctagct gtgcgcagag gtctgtgcag agctcttcca tggacagcct cacacctggg
     6721 cagagaagac ccttccctga ggactctgca ctttctgagc agccgcatgt ggatgcctgc
     6781 cgccacaggg cctttaaata cactgcgtcc aattccaggt gggaagatag catttcaggt
     6841 tctcagaaat caagtcacag gactgccttt cttccacact tcgaggataa ggagggcagc
     6901 ttttttgtgt gttctgtttt gtttttaaag taatgaaata tccccatcgc tgatgtctac
     6961 ggcaagtgat tcgtttctct gttgcgtttt gtttttttaa gcagttcccc ttccggtcaa
     7021 ggtcaggact ggtcaccatg acccccgtga tcatggatcc ccacaaaaca aataaaatag
     7081 tactgccaca
//
