LOCUS       XM_039080125            3243 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus TBC1 domain family, member 15
            (Tbc1d15), mRNA.
ACCESSION   XM_039080125
VERSION     XM_039080125.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts          :: corrected 1 indel
            internal stop codons :: corrected 1 genomic stop codon
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-155               JACYVU010000185.1  33490498-33490652   c
            156-254             JACYVU010000185.1  33477208-33477306   c
            255-329             JACYVU010000185.1  33476109-33476183   c
            330-468             JACYVU010000185.1  33467502-33467640   c
            469-479             JACYVU010000185.1  33464727-33464737   c
            480-653             JACYVU010000185.1  33463503-33463676   c
            654-679             JACYVU010000185.1  33463476-33463501   c
            680-782             JACYVU010000185.1  33456393-33456495   c
            783-980             JACYVU010000185.1  33455037-33455234   c
            981-1109            JACYVU010000185.1  33453839-33453967   c
            1110-1213           JACYVU010000185.1  33453186-33453289   c
            1214-1308           JACYVU010000185.1  33452224-33452318   c
            1309-1425           JACYVU010000185.1  33449087-33449203   c
            1426-1526           JACYVU010000185.1  33446175-33446275   c
            1527-1626           JACYVU010000185.1  33444351-33444450   c
            1627-1724           JACYVU010000185.1  33443587-33443684   c
            1725-1841           JACYVU010000185.1  33438814-33438930   c
            1842-1928           JACYVU010000185.1  33438221-33438307   c
            1929-3243           JACYVU010000185.1  33434933-33436247   c
FEATURES             Location/Qualifiers
     source          1..3243
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3243
                     /gene="Tbc1d15"
                     /note="TBC1 domain family, member 15; The sequence of the
                     model RefSeq transcript was modified relative to its
                     source genomic sequence to represent the inferred CDS:
                     deleted 1 base in 1 codon; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     mRNAs, 48 ESTs, 4 long SRA reads, 14 Proteins, and 97%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:366896"
                     /db_xref="RGD:1307920"
     CDS             126..2141
                     /gene="Tbc1d15"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon;
                     substituted 1 base at 1 genomic stop codon"
                     /codon_start=1
                     /transl_except=(pos:483..485,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: TBC1 domain family member
                     15"
                     /protein_id="XP_038936053.1"
                     /db_xref="GeneID:366896"
                     /db_xref="RGD:1307920"
                     /translation="MAAAGVVSGKIIYEQEGVYIHSSSGKANDQDSLISGILRVLEKD
                     AEVIVDWRPLDDALDSSSILYAGKDSSSVVEWTQAPKERAHRGSEHQSSYEAEWDMVT
                     TVSFKKKPHTNGDSSGPXKWKSKWSFLFCLADLKSIKQSKEGMGWSYLVFCLKDDVVL
                     PALHFHQGDSKLLIESLGKYVVLCESSQDSRTLLVNCQNKSLSQSFENLLDEPAYGLI
                     QKIKKDPYTATMVGFSKVTNYIFDSLRGSDPSTHQRPPSEMADFLSDAIPGLKINQQE
                     EPGFEVITRIDLGERPVVQRREPVSLEEWTKSLDSEGRLLNVESMKQMIFRGGLSHSL
                     RKQAWKFLLGYFPWDSTKEERTQLQKQKTDEYFRMKLQWKSVSEAQEKRNSRLRDYRS
                     LIEKDVNRTDRTNKFYEGQDNPGLILLHDILMTYCMYDFDLGYVQGMSDLLSPLLYVM
                     ENEVDAFWCFASYMDQMHQNFEEQMQGMKTQLIQLSTLLRLLDSGFCSYLESQDSGYL
                     YFCFRWLLIRFKREFSFLDILRLWEVMWTELPCKNFHLLLCCAILESEKQQIMEKHYG
                     FNEILKHINELSMKIDVEDILCKAEAISLQMAQCKELPQAVCEILGLQDSEVTTPDSD
                     TDENVGTPCPVSAFPSSTLPVVAASEAKEDSPAQTLASPNACRLTPA"
ORIGIN      
        1 gcagttcccg ctagtccccg cctctttcct gcccggatgt tattttagac cggccggatg
       61 ttgttgtgag tctgagagac acgtgaggtt ctgctacgtc atcaccaggc acggcgcggg
      121 ggaacatggc ggcggcgggc gttgtgagcg ggaagattat atatgaacaa gaaggggtat
      181 atattcactc atcttccgga aaggcaaatg accaagacag cttaatttca ggaatattgc
      241 gtgttttaga aaaggatgct gaagtaatag tggactggag accattggat gacgcattag
      301 attcttctag tattctgtat gctggaaagg actccagttc agttgtagag tggactcagg
      361 ctccaaaaga aagagctcat cgaggatcgg aacaccagag cagctatgaa gcagagtggg
      421 acatggttac tacagtgtcg tttaagaaga aaccacatac caatggagac agttcaggac
      481 catagaaatg gaaaagcaaa tggtcattcc tgttctgttt ggcagacttg aaatcaatca
      541 agcaaagcaa agagggcatg ggctggtcgt acttggtctt ctgtttaaag gatgatgtcg
      601 tgcttcctgc tctgcacttc catcaaggag atagcaaact actgatcgag tctctcggga
      661 aatatgtggt attgtgtgag tcatcacaag atagtagaac gcttcttgtc aattgtcaga
      721 ataagagtct ttcacagtct tttgaaaatc ttcttgatga accagcatat ggcttaatac
      781 aaaaaattaa aaaggatcct tacacagcaa ccatggtagg attttccaaa gttacaaact
      841 acatttttga tagtttgcga ggcagcgatc cctctacaca tcaacgacca ccttcagaaa
      901 tggcggattt tcttagtgat gctattccag gtctaaagat aaaccagcaa gaagaaccag
      961 gatttgaagt catcacaaga attgatttgg gagagcgacc tgttgttcaa aggcgggaac
     1021 cagtatccct ggaagagtgg accaaaagcc tggactctga aggaagactg ctaaatgtgg
     1081 agagcatgaa gcagatgata ttcagagggg gtcttagtca ttctttaaga aagcaagcat
     1141 ggaaatttct cctgggttat tttccttggg atagtaccaa agaggaaaga actcaattac
     1201 aaaaacagaa aactgacgag tacttcagga tgaagctgca gtggaagtct gtcagtgagg
     1261 cgcaggagaa gagaaactca cgcctgagag actatagaag tctgattgag aaagatgtca
     1321 acaggacaga tcgaacaaac aagttctatg aaggccaaga taacccaggt ctgattctgc
     1381 tccacgacat tttgatgacc tactgcatgt atgactttga tttaggatat gtgcaaggaa
     1441 tgagcgactt actttccccc cttctgtatg tgatggagaa tgaagtggat gccttttggt
     1501 gttttgcctc ttacatggac cagatgcatc aaaattttga agaacaaatg caaggcatga
     1561 agacccagtt aatccagttg agcaccttac tcagattact ggacagtgga ttttgtagct
     1621 atttagaatc ccaggactct ggatatctgt atttttgctt cagatggctt ttaatcagat
     1681 ttaaaaggga atttagtttt ctagatatac ttcgattatg ggaggtaatg tggactgaac
     1741 tgccctgtaa gaattttcat cttcttctgt gttgtgctat cttggaatca gaaaagcaac
     1801 agataatgga gaagcattat ggcttcaatg aaatccttaa gcacatcaat gaattgtcca
     1861 tgaaaattga tgttgaagat atactgtgta aagcagaagc aatttcccta cagatggccc
     1921 aatgcaagga attgccccaa gcagtttgtg agatcctggg acttcaggac agcgaagtta
     1981 caacgccaga ttccgacact gatgaaaatg ttggaactcc ttgtcccgta tctgcatttc
     2041 caagtagcac cttgcccgtc gttgctgcca gcgaagccaa agaggacagt ccagcacaga
     2101 cattagcatc cccaaatgcc tgcagactaa cacctgcatg atcattgtct tccgtgtttt
     2161 aagagataac tttgttgcaa ttccttttta agtacatgaa aggtagacat ttacagtctt
     2221 ggtattgatc atgctttaag ttttatggaa agacagtgta ctgatgttct tgcattaaag
     2281 ctttacaaag ttttaaacta attatttttg tagttacttc taccaaatag cctttccttt
     2341 tcaataacat tccttagtat ttttatagct aagcacatct tattttgttg ctgatgaacc
     2401 ggtgttggat aaatattaca agtggatgct ttggaaatta cgcactttga aaagcgttca
     2461 ctgtgtttac tccttagtgg ctttggactt gattaaatta agtgttgagc ctttataaag
     2521 cattctaagc tgagaagtag attgttactc ggtgatgaaa tttaaaatac aaacaaattt
     2581 ggtttttcta ttgtttacaa caatactcag cttacctatt tatgctggtt gaatgtgatt
     2641 taaataagaa tttttaccaa tgtagttagt cgtggataaa gaaccatttc aaccttagca
     2701 actggattgg cagtatgttt ttttacaaag aacttttctt tacttgtata taggctatat
     2761 atacgtacta tttatgagta taagaaagca tagtcctatt ttctttaact gaataaactt
     2821 gacttgattt atataagctg attcaacaaa attaatacat ggcttcaata taagatcttt
     2881 ttcaaaacta ttttcttaac tgaacattta tttaatgaga ctacattgaa ccctgtctat
     2941 acctggtata aatcactgta acctctttac taataatgtt tattatcttt cctaatactg
     3001 cactaattgg ttaatcgaat ctttacattt tttaaaatat tctttgcaaa aagcttatgt
     3061 caaaaatttc caggcactgt tatgagtctc aaaggaatat tttttgtata tgaatgaagc
     3121 tgtttttacc atgcagtgtt gcatgttttt aagttctgtg gaattaccat aacaaattcc
     3181 gttttaattg taatttgtta actcttgtac atatcattaa aataaaatca aatttaaatt
     3241 agt
//
