LOCUS       NM_001399454            3547 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus TBC1 domain family, member 13 (Tbc1d13), mRNA.
ACCESSION   NM_001399454 XM_575106
VERSION     NM_001399454.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3547)
  AUTHORS   Davey,J.R., Humphrey,S.J., Junutula,J.R., Mishra,A.K.,
            Lambright,D.G., James,D.E. and Stockli,J.
  TITLE     TBC1D13 is a RAB35 specific GAP that plays an important role in
            GLUT4 trafficking in adipocytes
  JOURNAL   Traffic 13 (10), 1429-1441 (2012)
   PUBMED   22762500
REFERENCE   2  (bases 1 to 3547)
  AUTHORS   Yoshimura,S., Egerer,J., Fuchs,E., Haas,A.K. and Barr,F.A.
  TITLE     Functional dissection of Rab GTPases involved in primary cilium
            formation
  JOURNAL   J Cell Biol 178 (3), 363-369 (2007)
   PUBMED   17646400
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Jan 7, 2022 this sequence version replaced XM_575106.6.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360176.1120651.1,
                                           SRR26643284.3962.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-149               JAXUCZ010000003.1  33806772-33806920
            150-223             JAXUCZ010000003.1  33807774-33807847
            224-264             JAXUCZ010000003.1  33809490-33809530
            265-326             JAXUCZ010000003.1  33809940-33810001
            327-426             JAXUCZ010000003.1  33810116-33810215
            427-509             JAXUCZ010000003.1  33812262-33812344
            510-669             JAXUCZ010000003.1  33814050-33814209
            670-880             JAXUCZ010000003.1  33817937-33818147
            881-1044            JAXUCZ010000003.1  33818608-33818771
            1045-1205           JAXUCZ010000003.1  33819966-33820126
            1206-1263           JAXUCZ010000003.1  33820292-33820349
            1264-3547           JAXUCZ010000003.1  33821063-33823346
FEATURES             Location/Qualifiers
     source          1..3547
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3p12"
     gene            1..3547
                     /gene="Tbc1d13"
                     /note="TBC1 domain family, member 13"
                     /db_xref="GeneID:499768"
                     /db_xref="RGD:1591937"
     exon            1..149
                     /gene="Tbc1d13"
                     /inference="alignment:Splign:2.1.0"
     CDS             127..1329
                     /gene="Tbc1d13"
                     /codon_start=1
                     /product="TBC1 domain family member 13"
                     /protein_id="NP_001386383.1"
                     /db_xref="GeneID:499768"
                     /db_xref="RGD:1591937"
                     /translation="MSSLHKSRIADFQDVLKEPSIVLEKLRELSFSGIPCEGGLRCLC
                     WKILLNYLPLERDSWDSILAKQRGLYSQFLREMIIQPGIAKANMGVSREDVTFEDHPL
                     NPNPDSRWNTYFKDNEVLLQIDKDVRRLCPDISFFQRATEYPCLLILDPQNEFETLRK
                     RVEQTTLKSQTVARNRSGVTNMSSPHKNNAPSALNEYEVLPNGCEAHWEVVERILFIY
                     AKLNPGIAYVQGMNEIVGPLYYTFATDPNSEWKEHAEADTFFCFTNLMAEIRDNFIKS
                     LDDSQCGITYKMEKVYSTLKEKDVELYLKLQEQSIKPQFFAFRWLTLLLSQEFLLPDV
                     IRIWDSLFADGNRFDFLLLVCCAMLILIREQLLKGDFTVNMRLLQDYPISDVCKILQK
                     AKELQDSK"
     exon            150..223
                     /gene="Tbc1d13"
                     /inference="alignment:Splign:2.1.0"
     exon            224..264
                     /gene="Tbc1d13"
                     /inference="alignment:Splign:2.1.0"
     exon            265..326
                     /gene="Tbc1d13"
                     /inference="alignment:Splign:2.1.0"
     exon            327..426
                     /gene="Tbc1d13"
                     /inference="alignment:Splign:2.1.0"
     exon            427..509
                     /gene="Tbc1d13"
                     /inference="alignment:Splign:2.1.0"
     exon            510..669
                     /gene="Tbc1d13"
                     /inference="alignment:Splign:2.1.0"
     exon            670..880
                     /gene="Tbc1d13"
                     /inference="alignment:Splign:2.1.0"
     exon            881..1044
                     /gene="Tbc1d13"
                     /inference="alignment:Splign:2.1.0"
     exon            1045..1205
                     /gene="Tbc1d13"
                     /inference="alignment:Splign:2.1.0"
     exon            1206..1263
                     /gene="Tbc1d13"
                     /inference="alignment:Splign:2.1.0"
     exon            1264..3547
                     /gene="Tbc1d13"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcgcacgctc gcggttttgc ttcccgccgg aggcttttgc ccagcgtccc ggtgttcccc
       61 gagggagggg ggcggtggtg gcagctgggg ctgcagttgc agcccagggg tccggaagtc
      121 aacaccatgt cgagtctgca caagagccgg attgcagatt tccaggatgt cctgaaggag
      181 ccctccattg tgttggaaaa gcttcgagaa ctcagtttta gtggcatccc ctgtgagggc
      241 ggactgcggt gcctctgctg gaagatcctc ctgaactacc tccctttgga gagagactcg
      301 tgggattcca tcctggccaa gcagaggggg ctttattcac agttcctgag agagatgatt
      361 attcagcctg gcattgcgaa ggccaacatg ggtgtgtcca gagaggacgt gacctttgag
      421 gaccatcccc tgaacccaaa ccctgacagc aggtggaaca cgtattttaa ggacaacgag
      481 gtgctattgc agattgacaa agatgtccgg aggctgtgcc cagatatatc cttcttccaa
      541 agagccactg agtacccctg cctcctcatc ctggacccgc agaatgagtt tgagaccctt
      601 cgtaagcgtg tggagcagac gacactgaag tctcagacgg tggcccggaa ccgaagcggg
      661 gtcacaaata tgagctcccc gcacaagaac aatgcaccat cagccctgaa cgagtatgag
      721 gttctaccca atggctgcga agcccactgg gaggtggtgg agcggatcct gttcatctat
      781 gccaagctca accctggcat cgcttatgtg cagggcatga atgagatcgt gggccccctc
      841 tactacactt ttgccactga ccctaacagc gagtggaaag agcacgctga agcagatacc
      901 tttttctgct tcaccaacct catggccgag atacgggaca acttcatcaa gagcctggat
      961 gactcccagt gcggcatcac ctacaagatg gaaaaggtgt actccacctt gaaggagaag
     1021 gacgtggagc tctacctgaa gctgcaagaa cagagtatca agcctcagtt ctttgccttc
     1081 cgatggctga cactactgct gtcccaggag ttcttgttac ctgatgtcat ccggatatgg
     1141 gactccctct ttgctgatgg caaccgcttc gatttcctcc tcctggtctg ctgtgctatg
     1201 ctcatactga tccgggagca gttgctgaag ggggacttca ctgtcaacat gcggcttctg
     1261 caggattacc ccatctcaga tgtctgcaag atcttacaga aagccaagga actccaagac
     1321 tcgaagtaac ccggcagcag gaggcccagg actagaacat tcacctgcgc tctgcaccct
     1381 tcattttggg acacaaagga gcctgtgaga gagccagcct gagggccagc tccgggtctg
     1441 cccagtctgc gtccagggtc caggctgctc ctggagcaca ccgtgctgcg ctccttccca
     1501 gtgctcagcc tgccacaccc tgcacttcag cctgggaccc tcaccagact gctcagaagg
     1561 gctggagctc ctcagctggc ttcctagggc tgtcactggg ggcctaggag gcttacaggt
     1621 cctgtcaggc ctctgcccag gggctcctca ccctttgtgc tttcaccttc cctgggccct
     1681 gatcagggag ggaatcggcg aatgggccgg aaaccacttc tgcgtgttgg tgctcaagct
     1741 acctggggaa gcacctccag aagagctgag tgactgccag ttctaggggc accgtttgtc
     1801 tccatcaggt gtttgctcgt ggccgttagg gctgtctccc gggtctctgc ttttgtgtgt
     1861 gtgtgtacat gtgtgttcac acatgccctg gcagtggggt gagggtgtgt gggaaccctc
     1921 taaggccctg cttccccttc tgtgtctacc tctgcctgtc cctttcttcc tttgccagag
     1981 gcatgtgtga ttcctgctat cttcctctgt cttttcctct tcacccttct cttggggcgc
     2041 cttaccctga ccctcttccc ttgctcctgc cctctgctcc ctgaagtcag cattcagaag
     2101 gagtgtagct tagtgaaagc cctggaggcc agctttgttg gcctcctgtt cccatcccca
     2161 gcctgaggcc tccaggtccc ctcatcagag caggagtccc tagtatttgg tcagcagact
     2221 tgaggaagcc aagtgctgct gacaacggca gcctgtgaag ctctgagcct ggctcccatt
     2281 ttctgcccaa gaatggagaa aggaaggacg ggagagtctt cagtcagaga tgaagacacc
     2341 atggcacctc agcctgggag ctgccacccc ttgacttcca tgtccccacc cagggtgtgc
     2401 aggtcttgtc aaaggcaagg ggaccaaaga atgcttctct gggtccaggg ttggcttgac
     2461 tggaaagcct ggagcctcac agtgccagag ggctacatct ggcctctgtt ccctcggggc
     2521 ggggctgggg aggctgcaga ggtgctggcc ttcctggtca tgtgcgtgat gtgtcttctg
     2581 gcgctggggc tgggttccct gcaccctgtt cagcaagtag actgtcctga ccatgtccct
     2641 tctggctctc atgtggaggg agggagggag ggaaggcggc ctgagtcctg aaggcaggct
     2701 ggcagcaagg gttctcacct gaggccccag cagcggccat ctgaagcctt ctggagagca
     2761 gtgtcaggca ggcagggctt ccggccaggg aggccgttgc tttagctgcc tgggctctgc
     2821 tgggatctgc ttgctgtttt gctaccctct ctccccacac aatgcctggg agatgtttta
     2881 ctatttattt agacataggc tagctattta ttgcagatta gcaaggacct gggactctgg
     2941 gtgggtagga gtggctgaga tggtaaagga gttggaggtg tggattctct catttcccaa
     3001 agttacccct gacatcctct ccccgttcct ggctgggagg gctgccagct ctacactaga
     3061 acccagtata agggaggcca gagctgatgg ctttgcattt gcaaagatgc aggccatata
     3121 cacccccacc gtcctgatgg ccctcaaacc tagcacttgt taactcagtc ccagacccct
     3181 ttgtcctggg acgcagcaga ggctccccag gacacaggcg cattccctct tgcctgtctc
     3241 ccaccacaac cttacctgcc cccttcctgg gaccatgcta ctggaatcgc tgcgtctggt
     3301 ttgtttctgt gggagaccta catcctgtgc ccaccacttg tccttgagat gaaggccaag
     3361 gacatggaga ctgtcttggg tagggtggct ccacagatgg gtgctgtctg aggaaaggat
     3421 ctgcccttga ttctgaagga ggagtcagag cctgagtgcc tgcgactcag ttgggagcag
     3481 ctcccaggag ctcagcaggc cagtgctgtt gatgagttct ctttaataaa ctgtgtgctc
     3541 tctacca
//
