LOCUS       NM_001377114            3910 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus TBC1 domain family, member 12 (Tbc1d12), mRNA.
ACCESSION   NM_001377114 XM_003753395
VERSION     NM_001377114.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3910)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Dec 13, 2019 this sequence version replaced XM_003753395.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR23984936.580302.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-838               JAXUCZ010000001.1  246015994-246016831
            839-962             JAXUCZ010000001.1  246042960-246043083
            963-1078            JAXUCZ010000001.1  246054496-246054611
            1079-1161           JAXUCZ010000001.1  246071268-246071350
            1162-1279           JAXUCZ010000001.1  246073953-246074070
            1280-1386           JAXUCZ010000001.1  246075929-246076035
            1387-1467           JAXUCZ010000001.1  246083458-246083538
            1468-1556           JAXUCZ010000001.1  246088582-246088670
            1557-1628           JAXUCZ010000001.1  246090992-246091063
            1629-1757           JAXUCZ010000001.1  246091757-246091885
            1758-1867           JAXUCZ010000001.1  246092131-246092240
            1868-2126           JAXUCZ010000001.1  246094394-246094652
            2127-3910           JAXUCZ010000001.1  246096458-246098241
FEATURES             Location/Qualifiers
     source          1..3910
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q53"
     gene            1..3910
                     /gene="Tbc1d12"
                     /note="TBC1 domain family, member 12"
                     /db_xref="GeneID:685933"
                     /db_xref="RGD:9377071"
     exon            1..838
                     /gene="Tbc1d12"
                     /inference="alignment:Splign:2.1.0"
     CDS             114..2195
                     /gene="Tbc1d12"
                     /note="TBC1 domain family member 12-like"
                     /codon_start=1
                     /product="TBC1 domain family member 12"
                     /protein_id="NP_001364043.1"
                     /db_xref="GeneID:685933"
                     /db_xref="RGD:9377071"
                     /translation="MMGPEDAGACSGRNAELLPVPGPMGQDGKTVPATGGFSGGAVAA
                     EPPGEAGEEEAPPPRQLLQRYLAAAAGPLQPGLGGVEAEAAAVPAARGSGMTNGDSGF
                     LLLQDRRGPEEARRRRTCGRPCLAEPADEGVDGAGGLDDWAAPLEDPLRSCCLAAGDT
                     DDPDPTATTSAGRDVGSAESSLGLPDARFGSRNTFEVSRRQSAGDLLPSAGQSAPLPA
                     AEQGPGGTTVRARRSGGFADFFARNLFPKRTKELKSVVHSAPGWKLFGKVPPRENLQK
                     TSKIIQQEYEARTGRTCKVPPQSSRRKNFEFEPLSTTALILEDRPSNLPAKSVEEALR
                     HRQEYDEMVAEAKKREIKEAHKRKRIMKERFKQEESIASAMVIWINEILPNWEVMRST
                     RRVRELWWQGLPPSVRGKVWSLAVGNELNITPELYEIFLSRAKERWKSFSESSSDSDM
                     EGLSVADREASLELIKLDISRTFPSLYIFQKGGPYHDVLHSILGAYTCYRPDVGYVQG
                     MSFIAAVLILNLEEADAFIAFANLLNRPCQLAFFRVDHSMMLKYFATFEVFFEENLSK
                     LFLHFKSYNLTPDIYLIDWIFTLYSKSLPLDLACRVWDVFCRDGEEFLFRTGLGILRL
                     YEDILLQMDFIHIAQFLTKLPEDITSEKLFSCIAAIQMQNSTKKWTQVFASVTKDIKE
                     GDKNNSPALKS"
     exon            839..962
                     /gene="Tbc1d12"
                     /inference="alignment:Splign:2.1.0"
     exon            963..1078
                     /gene="Tbc1d12"
                     /inference="alignment:Splign:2.1.0"
     exon            1079..1161
                     /gene="Tbc1d12"
                     /inference="alignment:Splign:2.1.0"
     exon            1162..1279
                     /gene="Tbc1d12"
                     /inference="alignment:Splign:2.1.0"
     exon            1280..1386
                     /gene="Tbc1d12"
                     /inference="alignment:Splign:2.1.0"
     exon            1387..1467
                     /gene="Tbc1d12"
                     /inference="alignment:Splign:2.1.0"
     exon            1468..1556
                     /gene="Tbc1d12"
                     /inference="alignment:Splign:2.1.0"
     exon            1557..1628
                     /gene="Tbc1d12"
                     /inference="alignment:Splign:2.1.0"
     exon            1629..1757
                     /gene="Tbc1d12"
                     /inference="alignment:Splign:2.1.0"
     exon            1758..1867
                     /gene="Tbc1d12"
                     /inference="alignment:Splign:2.1.0"
     exon            1868..2126
                     /gene="Tbc1d12"
                     /inference="alignment:Splign:2.1.0"
     exon            2127..3910
                     /gene="Tbc1d12"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcgatcccag cgcgtgcccg gcctcccgca actgccccag ccgcggggtg ggaggggtgg
       61 gtccgggaac gttgcggcgg ccgtggccgc ggacgcgtcc cccgccgcct cagatgatgg
      121 gtcccgagga tgccggagcc tgctcgggaa ggaacgccga gctgctccca gtcccggggc
      181 ccatgggtca ggacgggaag accgtcccgg ccaccggcgg ctttagcgga ggcgccgtcg
      241 ccgccgagcc gcccggggag gctggagagg aggaggcgcc gccgccgcgg cagctcctgc
      301 agcggtacct cgcggcggct gcgggcccgc tgcagccggg gctcggcggg gtggaagcgg
      361 aggcggcggc ggtccccgcg gcgcgcggct caggcatgac caacggagac tcgggctttt
      421 tgctgctcca ggaccgtcgc ggcccagagg aggcgcgtcg ccgccgaacc tgcggccgtc
      481 cctgcctggc ggagcccgcg gacgagggcg tggacggtgc gggtggcctg gacgactggg
      541 ccgcgccgct cgaggacccg ctgcggagct gctgcctggc ggccggggac acggacgacc
      601 cggaccccac agctaccacc tctgccggga gggacgttgg gagcgcggag tccagcctcg
      661 gcctccccga cgcccgcttc ggctctcgga acacgttcga ggtgagccgc cgtcagagcg
      721 ctggcgacct cctgccctcg gcggggcagt ccgcaccctt gccagcggca gagcagggcc
      781 ccgggggcac cacggttcgg gctcgacgga gcggtggctt cgcggatttc ttcgccagaa
      841 accttttccc aaaaaggaca aaggaactca aatcagttgt ccatagtgct cctggatgga
      901 aattatttgg taaagtccct cccagagaaa atcttcagaa aacctccaaa attattcagc
      961 aggagtatga agcgcggaca gggaggacct gtaaagtacc gcctcagtct tcaagacgta
     1021 agaattttga gtttgagcca ctttctacca ctgccctgat tcttgaggac cgaccatcga
     1081 atcttcctgc gaagtctgtg gaagaagctt tacgtcaccg gcaggagtat gatgagatgg
     1141 tggctgaagc taaaaaacga gaaattaaag aagcacataa aagaaaaaga ataatgaaag
     1201 agcggtttaa gcaggaggaa agcattgcca gtgcaatggt gatttggatc aatgagatac
     1261 tgcccaattg ggaagtgatg cgtagtacaa gaagagttcg agaattgtgg tggcagggat
     1321 tgccccctag tgttcgtggg aaagtttgga gtctagctgt aggaaatgaa ctaaatatca
     1381 ctcctgaact ttatgaaatc tttctttcaa gagcaaaaga acggtggaaa agcttcagtg
     1441 aatcaagttc tgatagtgac atggaaggtc tatctgttgc tgaccgagag gctagtctgg
     1501 aattaattaa gttggacata tctcgtacat ttccatctct ctacatcttt cagaagggtg
     1561 gcccatacca cgatgttttg catagtatcc taggggcata tacatgttac agacctgacg
     1621 ttggttacgt ccaagggatg tccttcatcg cagccgtact catcctcaat ctggaggaag
     1681 cagacgcctt cattgcgttt gcaaatctcc tgaacaggcc gtgccagctc gccttcttcc
     1741 gtgtggatca cagcatgatg ttgaagtatt ttgcaacatt tgaagtattc tttgaggaaa
     1801 acctatccaa actatttctt catttcaagt catacaatct tacaccagat atatatttga
     1861 tagattggat cttcacactg tacagcaaat cactgcctct tgatctggcc tgccgcgtct
     1921 gggatgtgtt ttgtagagat ggggaggaat ttttatttag gactggacta ggaatcctca
     1981 ggctatatga agatattctc ctacagatgg actttattca tatagcacaa tttcttacca
     2041 aattgccaga agacataaca tcagagaagc ttttcagctg catcgcagcc attcagatgc
     2101 agaatagcac caagaagtgg actcaggtct ttgcttctgt aacaaaggac attaaagaag
     2161 gggataagaa caacagtcct gctttgaaga gctaaccttt gagttagtga caaactgaaa
     2221 tgcaaaaggt agttttgggg gaaagttttt ctctttcctg tgtagatagt gtggaagaaa
     2281 atgttggaga gaagaatcaa gagctggaaa actgctgggt ttaaattcca tcgttgaagt
     2341 aaatgaaata cataatttat tgacagtatt aataaaaaac gtacctgggg agagccattt
     2401 ttcagaggaa aaggcttagt tggctattac atactccata atttggagtg aatattttaa
     2461 tgcaataatt ttttttaaat agcttcacag aaacttcaat tttttatgtc ctttcttttt
     2521 ttaacaatta actacaaatg cacatttggg gtcagagtag gattgttaaa tcctatttta
     2581 ctctccaaaa ctagatagaa cacatgtatt atctccagtt ctgagctttt gaagctatct
     2641 agaccattag caagcagcag ttccgttagt cactaaagcc cttgcttacc tcactcatag
     2701 gctacggaag ttcgttctca tcctctagaa ctggaatcct gatggatggg cattatttct
     2761 tgttttgctt atggtgttcc ccaaagtgtt gtgtcccttt gtttttgaag agaaattgtt
     2821 ttctaagtaa tttccatcac aaaagaattt tcaccttttt gtttcttgtc tgcaaattgt
     2881 tatgtagtaa cttaacatta aaaaactaag taactggtag aatggaagat ctttttgcac
     2941 tttagtgaac cgaagacttg actttgagaa taagaataaa aaaagcaatg aattctaaga
     3001 gttcgagata acacactact tacaagactt gaatttttta gttaaaatcc atgttctatc
     3061 tatagaaaca aattttatta atttcagttt gaaatttaaa actttatata gctaagtcta
     3121 agacttgtga aactctatgc atattttttc taattgatgg gaataatagt aaaagtaatt
     3181 ttaccttttt tcttagtcta atggcatctc atataaatta ttaatcattg gtaaattgac
     3241 attaaattta ttattcttaa tttttaacct aacctaaatc atttgagtat tatggttaat
     3301 atctgtgtaa aataccattt ggttattgac tagatttata ctgttttgat gttgcagttt
     3361 ggtttgaaac agcatagaag cacacatttc tgttagtatg gacatgcgta tttagtcttt
     3421 agactaacaa gccagagatt cttccttatt ggataataaa ctgccttagg agtatgggac
     3481 cagaggaagt acatatattt ttaccctatg ggttgatcct tctagcctca ggaaccctgt
     3541 ggaattaact cctgtcatag ggactggctc agtgaaactg gtagtataac agaatactga
     3601 gggagtttct agagtcttaa tagggtctag catcaggact atcccttgat atcggtggcc
     3661 ctcataaaag gcacataacc tctgggaata atctctttga atttatacta ctcggcctag
     3721 attaaacctt attttcatgt attagtttgc taaggtggtc ctacattctg tattcctttc
     3781 tcttattttt ttttattgta cagtttcttt acctaccaag tataaatgtg tatataaaat
     3841 gtaaatacaa aaaaattaac taaaatccat tagtaacaat tactatgaaa aataaaactt
     3901 gtacacagaa
//
