LOCUS       NM_001081980            1719 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus TBC1 domain family, member 10C (Tbc1d10c), mRNA.
ACCESSION   NM_001081980 XM_001071145 XM_341980
VERSION     NM_001081980.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1719)
  AUTHORS   Schickel,J.N., Pasquali,J.L., Soley,A., Knapp,A.M., Decossas,M.,
            Kern,A., Fauny,J.D., Marcellin,L., Korganow,A.S., Martin,T. and
            Soulas-Sprauel,P.
  TITLE     Carabin deficiency in B cells increases BCR-TLR9
            costimulation-induced autoimmunity
  JOURNAL   EMBO Mol Med 4 (12), 1261-1275 (2012)
   PUBMED   23109291
REFERENCE   2  (bases 1 to 1719)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   3  (bases 1 to 1719)
  AUTHORS   Yoshimura,S., Egerer,J., Fuchs,E., Haas,A.K. and Barr,F.A.
  TITLE     Functional dissection of Rab GTPases involved in primary cilium
            formation
  JOURNAL   J Cell Biol 178 (3), 363-369 (2007)
   PUBMED   17646400
REFERENCE   4  (bases 1 to 1719)
  AUTHORS   Fuchs,E., Haas,A.K., Spooner,R.A., Yoshimura,S., Lord,J.M. and
            Barr,F.A.
  TITLE     Specific Rab GTPase-activating proteins define the Shiga toxin and
            epidermal growth factor uptake pathways
  JOURNAL   J Cell Biol 177 (6), 1133-1143 (2007)
   PUBMED   17562788
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC099180.1, JAXUCZ010000001.1, CO564143.1 and BC105899.1.
            
            On or before Mar 8, 2007 this sequence version replaced
            XM_341980.3, XM_001071145.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC160813.1, FQ226277.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760389 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-511               BC099180.1         1-511
            512-515             JAXUCZ010000001.1  210911395-210911398 c
            516-1084            CO564143.1         42-610
            1085-1692           BC099180.1         970-1577
            1693-1719           BC105899.1         1221-1247
FEATURES             Location/Qualifiers
     source          1..1719
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q43"
     gene            1..1719
                     /gene="Tbc1d10c"
                     /gene_synonym="RGD1311490"
                     /note="TBC1 domain family, member 10C"
                     /db_xref="GeneID:361697"
                     /db_xref="RGD:1311490"
     exon            1..18
                     /gene="Tbc1d10c"
                     /gene_synonym="RGD1311490"
                     /inference="alignment:Splign:2.1.0"
     exon            19..196
                     /gene="Tbc1d10c"
                     /gene_synonym="RGD1311490"
                     /inference="alignment:Splign:2.1.0"
     CDS             45..1385
                     /gene="Tbc1d10c"
                     /gene_synonym="RGD1311490"
                     /codon_start=1
                     /product="carabin"
                     /protein_id="NP_001075449.1"
                     /db_xref="GeneID:361697"
                     /db_xref="RGD:1311490"
                     /translation="MAQALGEDLLLPSELQDDSSSLGSDSEISGSSPYRQADRYGFIG
                     GNSAELGLGQPPADLIRQREMKWVEMTLHWEKTMSRRYKKVKIQCRKGIPSALRARCW
                     PLLCGAHMCQKNNPGTYQELAVAPGDPQWMETIGRDLHRQFPLHEMFVSPQGHGQQGL
                     LQVLKAYTLYRPEQGYCQAQGPVAAVLLMHLPPEEAFWCLVQICEVYLPGYYGPHMEA
                     VQLDAEVFMALLRRLLPRVYKHLQQVGVGPLLYLPEWFLCLFTRSLPFPIVLRIWDAF
                     LSEGAKVLFRAGLTLMRLALGTVEQRTACPGLLETLGALRTIPPTQLQEEVFMSQVHN
                     VALSERDLQREIRIQLAQLPKSSPGPVPLPQARLPGAQAIFESQQLAGMRGGAKPEIP
                     RIVVQPPEEPNPPRRKPQTRGKTFHGLLIRARGPPIEGPSRSHRGSASFLDTRF"
     exon            197..296
                     /gene="Tbc1d10c"
                     /gene_synonym="RGD1311490"
                     /inference="alignment:Splign:2.1.0"
     exon            297..404
                     /gene="Tbc1d10c"
                     /gene_synonym="RGD1311490"
                     /inference="alignment:Splign:2.1.0"
     exon            405..511
                     /gene="Tbc1d10c"
                     /gene_synonym="RGD1311490"
                     /inference="alignment:Splign:2.1.0"
     exon            512..626
                     /gene="Tbc1d10c"
                     /gene_synonym="RGD1311490"
                     /inference="alignment:Splign:2.1.0"
     exon            627..692
                     /gene="Tbc1d10c"
                     /gene_synonym="RGD1311490"
                     /inference="alignment:Splign:2.1.0"
     exon            693..882
                     /gene="Tbc1d10c"
                     /gene_synonym="RGD1311490"
                     /inference="alignment:Splign:2.1.0"
     exon            883..1037
                     /gene="Tbc1d10c"
                     /gene_synonym="RGD1311490"
                     /inference="alignment:Splign:2.1.0"
     exon            1038..1711
                     /gene="Tbc1d10c"
                     /gene_synonym="RGD1311490"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtgaggtgca gcaaggagcc tgtgacactg gggtctaggg cagaatggcc caggccctgg
       61 gagaggactt gttgctaccg tcagaactac aggatgattc tagctctcta gggtccgact
      121 cagagatcag tgggtccagc ccatatcgtc aggctgaccg atatggcttc attgggggca
      181 actcagctga gctggggctt ggtcaacccc ctgcagacct tattcgccag cgggagatga
      241 aatgggtaga aatgacctta cactgggaga agaccatgtc tcgacgatat aagaaggtaa
      301 agatacagtg ccgaaagggc atcccctcag ccctacgtgc ccggtgttgg cccctactgt
      361 gtggggccca tatgtgtcag aagaacaatc ctggcaccta tcaggagctg gcagtggccc
      421 caggggaccc gcagtggatg gagaccattg gcagggactt gcaccggcag ttccctctgc
      481 acgagatgtt tgtgtcaccc cagggacatg ggcagcaggg gctgctgcag gttctcaagg
      541 cctacaccct gtaccggcca gaacagggat attgccaggc tcagggacct gtagctgctg
      601 tgctgctcat gcatctgccc ccagaggaag ccttctggtg cttggtgcag atctgtgagg
      661 tctacctccc tggctactat gggccccaca tggaagcagt gcagctggat gccgaagtgt
      721 tcatggctct actgcggcga ttgctcccac gtgtgtacaa gcacctgcag caggtaggcg
      781 ttggccccct gctctacctg cctgagtggt tcctgtgcct cttcactcga tcgctgccct
      841 tccccatcgt gcttcgcatc tgggatgcct tcctcagtga gggtgccaag gtactgttcc
      901 gtgcagggct gacactgatg cgcctagcac tgggcactgt ggaacagcgc acagcatgcc
      961 cagggctcct ggagacactt ggggccttac gaaccattcc ccctacccag ctgcaggaag
     1021 aggtcttcat gtcccaggta cacaatgtag ctctgtctga gcgagacctg caacgggaaa
     1081 tcaggatcca gctggcccag ctgcccaagt catcacctgg gccagtccct ctgccacagg
     1141 cccgccttcc tggggctcaa gccatctttg agtcccagca gctggctggg atgcgaggag
     1201 gcgccaaacc tgagatacct cgaattgtgg tgcagcctcc agaggagccc aatccaccac
     1261 gtcgcaagcc gcagacccgt ggcaagactt tccatgggct cctgataagg gccaggggac
     1321 cccctattga gggtccctcc aggtcccaca gaggctctgc ctctttcctg gacaccagat
     1381 tctaagtgta ccatgcactt ggtgccacca catctcagtc atctgaacag tgacgccagc
     1441 cccagcaatg aggactgcgc tttactgctg ggctgtatga ctcagcaggg accaccttga
     1501 ggactgtgtc gggcacaaag atcaaggaat aataccgagt ggagcttgtg gggagctgtt
     1561 tggtgcctgc cattgccagc atcaaagcca gcaccaaagg attgtgggaa taaagcttct
     1621 ggctaaggta tggcacctca tgggcttctt gcaaggaaat gctcaaataa agcctgactg
     1681 agagatactg gataaagtta gatcaaatat taaaaaaaa
//
