LOCUS       NM_001015022            1911 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus TBC1 domain family, member 10a (Tbc1d10a), mRNA.
ACCESSION   NM_001015022 XM_341245
VERSION     NM_001015022.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1911)
  AUTHORS   Guo,Z., Neilson,L.J., Zhong,H., Murray,P.S., Zanivan,S. and
            Zaidel-Bar,R.
  TITLE     E-cadherin interactome complexity and robustness resolved by
            quantitative proteomics
  JOURNAL   Sci Signal 7 (354), rs7 (2014)
   PUBMED   25468996
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1911)
  AUTHORS   Gonzales,P.A., Pisitkun,T., Hoffert,J.D., Tchapyjnikov,D.,
            Star,R.A., Kleta,R., Wang,N.S. and Knepper,M.A.
  TITLE     Large-scale proteomics and phosphoproteomics of urinary exosomes
  JOURNAL   J Am Soc Nephrol 20 (2), 363-379 (2009)
   PUBMED   19056867
REFERENCE   3  (bases 1 to 1911)
  AUTHORS   Ketteler,R., Sun,Z., Kovacs,K.F., He,W.W. and Seed,B.
  TITLE     A pathway sensor for genome-wide screens of intracellular
            proteolytic cleavage
  JOURNAL   Genome Biol 9 (4), R64 (2008)
   PUBMED   18387192
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 1911)
  AUTHORS   Yoshimura,S., Egerer,J., Fuchs,E., Haas,A.K. and Barr,F.A.
  TITLE     Functional dissection of Rab GTPases involved in primary cilium
            formation
  JOURNAL   J Cell Biol 178 (3), 363-369 (2007)
   PUBMED   17646400
REFERENCE   5  (bases 1 to 1911)
  AUTHORS   Fuchs,E., Haas,A.K., Spooner,R.A., Yoshimura,S., Lord,J.M. and
            Barr,F.A.
  TITLE     Specific Rab GTPase-activating proteins define the Shiga toxin and
            epidermal growth factor uptake pathways
  JOURNAL   J Cell Biol 177 (6), 1133-1143 (2007)
   PUBMED   17562788
REFERENCE   6  (bases 1 to 1911)
  AUTHORS   Reczek,D. and Bretscher,A.
  TITLE     Identification of EPI64, a TBC/rabGAP domain-containing microvillar
            protein that binds to the first PDZ domain of EBP50 and E3KARP
  JOURNAL   J Cell Biol 153 (1), 191-206 (2001)
   PUBMED   11285285
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000014.1.
            
            On Oct 3, 2022 this sequence version replaced NM_001015022.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC093603.1, AB210856.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-247               JAXUCZ010000014.1  83279071-83279317
            248-347             JAXUCZ010000014.1  83297644-83297743
            348-455             JAXUCZ010000014.1  83302113-83302220
            456-562             JAXUCZ010000014.1  83303961-83304067
            563-677             JAXUCZ010000014.1  83304603-83304717
            678-743             JAXUCZ010000014.1  83304800-83304865
            744-933             JAXUCZ010000014.1  83305381-83305570
            934-1088            JAXUCZ010000014.1  83305655-83305809
            1089-1911           JAXUCZ010000014.1  83306356-83307178
FEATURES             Location/Qualifiers
     source          1..1911
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /map="14q21"
     gene            1..1911
                     /gene="Tbc1d10a"
                     /gene_synonym="Tbc1d10"
                     /note="TBC1 domain family, member 10a"
                     /db_xref="GeneID:360968"
                     /db_xref="RGD:1311641"
     exon            1..247
                     /gene="Tbc1d10a"
                     /gene_synonym="Tbc1d10"
                     /inference="alignment:Splign:2.1.0"
     CDS             39..1556
                     /gene="Tbc1d10a"
                     /gene_synonym="Tbc1d10"
                     /codon_start=1
                     /product="TBC1 domain family member 10A"
                     /protein_id="NP_001015022.1"
                     /db_xref="GeneID:360968"
                     /db_xref="RGD:1311641"
                     /translation="MAKSSRENGPRAPASGGSLSGTRESLAQGPDAATADELSSLGSD
                     SEANGFAERRIDKFGFIVGSQGAEGALEEVPLEVLRQRESKWLDMLNNWDKWMAKKHK
                     KIRLRCQKGIPPSLRGRAWQYLSGGKVKLQQNPGKFDELDMSPGDPKWLDVIERDLHR
                     QFPFHEMFVSRGGHGQQDLFRVLKAYTLYRPEEGYCQAQAPIAAVLLMHMPAEQAFWC
                     LVQVCEKYLPGYYSEKLEAIQLDGEILFSLLQKVSPVAHKHLSRQKIDPLLYMTEWFM
                     CAFARTLPWSSVLRVWDMFFCEGVKIIFRVGLVLLKHALGSPEKLRACQGQYETIEQL
                     RSLSPKIMQEAFLVQEVIELPVTERQIEREHLIQLRRWQETRGELECRSPPRMHGAKA
                     ILDAEPGPRPALQPSPSIRLPPDAALPSSKTKPHKQAQKEQKRTKTSGQPDKSPGLNQ
                     ATVVTASGDACPPQDAPPKDPVSQDPAPQDSTPQNLAYHHSQESLTSQESEDTYL"
     exon            248..347
                     /gene="Tbc1d10a"
                     /gene_synonym="Tbc1d10"
                     /inference="alignment:Splign:2.1.0"
     exon            348..455
                     /gene="Tbc1d10a"
                     /gene_synonym="Tbc1d10"
                     /inference="alignment:Splign:2.1.0"
     exon            456..562
                     /gene="Tbc1d10a"
                     /gene_synonym="Tbc1d10"
                     /inference="alignment:Splign:2.1.0"
     exon            563..677
                     /gene="Tbc1d10a"
                     /gene_synonym="Tbc1d10"
                     /inference="alignment:Splign:2.1.0"
     exon            678..743
                     /gene="Tbc1d10a"
                     /gene_synonym="Tbc1d10"
                     /inference="alignment:Splign:2.1.0"
     exon            744..933
                     /gene="Tbc1d10a"
                     /gene_synonym="Tbc1d10"
                     /inference="alignment:Splign:2.1.0"
     exon            934..1088
                     /gene="Tbc1d10a"
                     /gene_synonym="Tbc1d10"
                     /inference="alignment:Splign:2.1.0"
     exon            1089..1911
                     /gene="Tbc1d10a"
                     /gene_synonym="Tbc1d10"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gaggtggccg ctggcgctct ggtccgggcg cggccgatat ggcgaaaagc agcagagaga
       61 atgggccgcg cgcgcccgca tcgggcggga gcctgtccgg gacccgagag agcctggccc
      121 agggccccga cgccgccact gccgatgagc taagctccct gggctccgac tcggaggcca
      181 acggcttcgc cgagcgccgc atcgacaagt ttggcttcat cgtgggttcg cagggcgctg
      241 agggcgcgct ggaggaagtt cccctggagg tgctgaggca gagggagtcc aagtggctgg
      301 acatgctcaa caactgggac aaatggatgg ccaagaagca caaaaagatt cgtcttcgat
      361 gccagaaggg catcccacct tctctgcggg gacgagcttg gcaatacctg tcaggaggca
      421 aggtgaaact tcagcagaat cctggaaaat ttgatgagct ggacatgtct cctggggacc
      481 ccaagtggtt ggatgtgatt gagcgtgacc tgcaccggca gttccctttc catgagatgt
      541 tcgtgtcccg gggaggccac ggccagcagg acctgttccg tgtactgaag gcctacacgc
      601 tgtaccgccc tgaggagggc tactgccagg cccaggcgcc cattgctgcg gtgctgctca
      661 tgcacatgcc tgctgagcaa gccttctggt gtctggtcca agtctgtgag aagtacctgc
      721 ctggctacta cagtgagaaa ctggaggcaa tccagctgga tggcgagatc ctcttctcac
      781 tgctacagaa ggtgtcccct gtggctcaca agcaccttag ccgccagaag attgaccccc
      841 tgctgtacat gacggagtgg ttcatgtgtg cttttgcccg cacgctcccc tggagctctg
      901 tgctgcgagt ttgggacatg ttcttctgtg aaggagtcaa gatcatcttc cgcgtggggc
      961 tggtactgct gaagcatgcc ctaggctccc cagagaaact ccgagcctgc cagggccagt
     1021 atgaaaccat cgagcagctg cggagcctca gccccaagat catgcaggaa gccttcctgg
     1081 ttcaggaggt gatagagttg cctgtgacgg agcgccagat tgagcgggag cacctcatcc
     1141 agctgcggcg ctggcaagag acccgcggtg agctggagtg tcgctctcca cccaggatgc
     1201 atggtgccaa ggccatcctg gatgcagagc ctggtccccg acctgccctg caaccttcac
     1261 catccatccg cctgccccca gatgcagccc tccccagctc caagactaag ccacacaagc
     1321 aggcccagaa ggagcagaag cggacaaaga ccagtgggca accggacaag tccccaggcc
     1381 tcaatcaagc cacagtggtg actgcttcag gagatgcatg tcctcctcag gatgcgcccc
     1441 caaaggatcc agtctcccag gacccggctc cccaggactc tactcctcag aacttagcct
     1501 accaccattc ccaagagagc ctgacctccc aggagagtga ggacacctac ttgtaacccc
     1561 aggagctcaa gcctccgggc ggggtcttct cttgtcttac acggttcaaa gactgacaac
     1621 actccaggtc ctctgcacct gaggaaccaa ctgcttggcc attgggctgg gatagaatct
     1681 ggctggtcca gtacaggttc tacctgagcc tccttattta ttttctcttg agttgagctg
     1741 gtccagccag cataggcaga agctgtggcc aaaggggttg ggtctcagcc ccatccttct
     1801 gggggatgtt ccccaaggat tgggtgctga catgcgggga agcggtgggg tactctttgt
     1861 gtaaaataga aaatatggtt ttgtacggaa ataaacaggc ttgtatatag a
//
