LOCUS       XM_039099223            1324 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus thymus, brain and testes associated
            (Tbata), transcript variant X11, mRNA.
ACCESSION   XM_039099223
VERSION     XM_039099223.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051355.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039099223.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1324
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1324
                     /gene="Tbata"
                     /note="thymus, brain and testes associated; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 3 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:499429"
                     /db_xref="RGD:1561665"
     CDS             175..1185
                     /gene="Tbata"
                     /codon_start=1
                     /product="protein TBATA isoform X11"
                     /protein_id="XP_038955151.1"
                     /db_xref="GeneID:499429"
                     /db_xref="RGD:1561665"
                     /translation="MEQATQGAAQQRLPRNRGRRTWLSIFPAHLHSTKGPPSSQGQQE
                     KEVQKATSPKTEPQPEKKPEQVPRSHGDVGFQKEPVVPGIVDFELIHEDLKTTKPPTL
                     QPTPGAYRFGRLSHHSFFSRHHPQAQRVTHIQVTGRGGPGALPAPHQPPGAPWVQPTD
                     LTPSADIAGKPICMVRDEFSLAALTQPSFLTPCVMGMPTVSVPIGDPQSNRKPRLSTS
                     ATWRKNLKDLASRVTFFTKEIASTTNEQKDEPPMKDPSPREQGAKYSAETGRLIPAYS
                     HALTRRNRQAQRGHTSGKGGGVQASILQDQELLLQTTPATWPRKSPEHIQETDGTYPA
                     TT"
ORIGIN      
        1 gtttgcacac ccgccaccag accacgagag ctgtgccagc catagaagac gccggcattc
       61 ccagtctaat cttttcatct ctcattgcaa accctgctat gactacagag gtgaaacagc
      121 tggatgagca tcctctagtg agacccggat tgcctagagc tgaaaggaag gagaatggaa
      181 caggctactc agggggccgc ccagcaacgt cttcccagga atcgggggag gcgcacctgg
      241 cttagcatat tcccagccca cctccactcc accaagggac ctccctccag ccagggccag
      301 caagagaagg aagtgcagaa agccaccagt ccaaagacag agccccagcc tgagaagaag
      361 ccggagcaag ttccaaggag ccacggggat gttgggttcc agaaagagcc tgtggtccca
      421 ggcattgtgg atttcgagct gatccacgag gacctgaaga ccacaaagcc cccaacactg
      481 caaccaacac ccggtgccta ccgctttgga cgcctcagcc atcattcctt cttctcgagg
      541 catcacccgc aagcacagcg agtgactcat atccaagtta caggaagagg aggacctgga
      601 gcactccccg cccctcacca gccccctgga gctccttggg tccagcccac agatctcact
      661 ccctctgcag atatcgctgg caagcccatc tgcatggtca gggacgagtt ctctctggcg
      721 gccttgactc agccctcatt cttaaccccc tgtgtgatgg ggatgcctac cgtctctgtt
      781 cccattgggg atccacagtc caatcggaag ccccggcttt ctacttccgc cacctggagg
      841 aagaatttaa aggacctggc ctcccgagtg actttcttca ctaaggaaat cgcgtcaaca
      901 accaatgagc agaaggacga gcctcctatg aaggatcctt ctccgagaga gcagggggcc
      961 aagtactcag ctgagactgg taggcttatc cctgcttaca gccatgccct cacccgccga
     1021 aatcgccagg cccagcgggg ccacacttct ggcaaaggtg gaggagtcca agcctccatt
     1081 ctgcaggacc aggaactgct gctacagaca acaccggcaa cctggcctag gaagtccccc
     1141 gagcacatcc aagaaacaga cggaacatat cctgccacta cttgacccga ggccacagaa
     1201 aaagccaccg gcaaagaaag cagctaggga tggagattcc cagctgctcc actggatgga
     1261 acccctcact aagcatttgg cagaaaccac ccaatctggc cagcaggctg ccaacagcga
     1321 gtcc
//
