LOCUS       XM_039099218            2053 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus thymus, brain and testes associated
            (Tbata), transcript variant X4, mRNA.
ACCESSION   XM_039099218
VERSION     XM_039099218.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051355.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039099218.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2053
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2053
                     /gene="Tbata"
                     /note="thymus, brain and testes associated; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 ESTs, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:499429"
                     /db_xref="RGD:1561665"
     CDS             256..1911
                     /gene="Tbata"
                     /codon_start=1
                     /product="protein TBATA isoform X4"
                     /protein_id="XP_038955146.1"
                     /db_xref="GeneID:499429"
                     /db_xref="RGD:1561665"
                     /translation="MTTEVKQLDEHPLVSPKTEPQPEKKPEQVPRSHGDVGFQKEPVV
                     PGIVDFELIHEDLKTTKPPTLQPTPGAYRFGRLSHHSFFSRHHPQAQRVTHIQVTGRG
                     GPGALPAPHQPPGAPWVQPTDLTPSADIAGKPICMVRDEFSLAALTQPSFLTPCVMGM
                     PTVSVPIGDPQSNRKPRLSTSATWRKNLKDLASRVTFFTKEIASTTNEQKDEPPMKDP
                     SPREQGAKYSAETGRLIPAYSHALTRRNRQAQRGHTSGKGGGVQASILQDQELLGGLT
                     APGVKFSGPVGRGPRAGFLGLHLLPPVPPPPLHSYRQHRQPGLGSPPSTSKKQTEHIL
                     PLLDPRPQKKPPAKKAARDGDSQLLHWMEPLTKHLAETTQSGQQAANSESPTSWQTFP
                     DSWSSRVGRPLGYPKSPPKTSQHAGLDPGASLSDSTNRFSKGYPVLAALRSAKRKRFG
                     FGASADGLGSAHPPASPLHPSREAVAPTSRASRPSSRDTTGNLQSIPEEDENTTSIQD
                     RQTRVHGQSPSPPSTSDREPRGENDQAQGLKLRSIAESTETSE"
ORIGIN      
        1 gggtaaccta gcaaccactg ggctcagcac agtcacaaag caacaggttt gcccacaatt
       61 ccgacaagcc ttcgattagt cttatccatc ctggtcaggc accaggggct tctagctcat
      121 atgctatagt gggacatctt cctgatcttg tgttccagtt tgcacacccg ccaccagacc
      181 acgagagctg tgccagccat agaagacgcc ggcattccca gtctaatctt ttcatctctc
      241 attgcaaacc ctgctatgac tacagaggtg aaacagctgg atgagcatcc tctagtgagt
      301 ccaaagacag agccccagcc tgagaagaag ccggagcaag ttccaaggag ccacggggat
      361 gttgggttcc agaaagagcc tgtggtccca ggcattgtgg atttcgagct gatccacgag
      421 gacctgaaga ccacaaagcc cccaacactg caaccaacac ccggtgccta ccgctttgga
      481 cgcctcagcc atcattcctt cttctcgagg catcacccgc aagcacagcg agtgactcat
      541 atccaagtta caggaagagg aggacctgga gcactccccg cccctcacca gccccctgga
      601 gctccttggg tccagcccac agatctcact ccctctgcag atatcgctgg caagcccatc
      661 tgcatggtca gggacgagtt ctctctggcg gccttgactc agccctcatt cttaaccccc
      721 tgtgtgatgg ggatgcctac cgtctctgtt cccattgggg atccacagtc caatcggaag
      781 ccccggcttt ctacttccgc cacctggagg aagaatttaa aggacctggc ctcccgagtg
      841 actttcttca ctaaggaaat cgcgtcaaca accaatgagc agaaggacga gcctcctatg
      901 aaggatcctt ctccgagaga gcagggggcc aagtactcag ctgagactgg taggcttatc
      961 cctgcttaca gccatgccct cacccgccga aatcgccagg cccagcgggg ccacacttct
     1021 ggcaaaggtg gaggagtcca agcctccatt ctgcaggacc aggaactgct gggcggcctc
     1081 accgcacctg gagttaagtt ctcaggtccc gtggggaggg ggcccagggc aggattccta
     1141 gggctccacc tcctacctcc ggtaccccct ccacccctcc atagctacag acaacaccgg
     1201 caacctggcc taggaagtcc cccgagcaca tccaagaaac agacggaaca tatcctgcca
     1261 ctacttgacc cgaggccaca gaaaaagcca ccggcaaaga aagcagctag ggatggagat
     1321 tcccagctgc tccactggat ggaacccctc actaagcatt tggcagaaac cacccaatct
     1381 ggccagcagg ctgccaacag cgagtcccct acctcctggc aaacatttcc agattcttgg
     1441 agctccaggg tggggaggcc cttggggtac cccaagtcac cacccaaaac atcccagcat
     1501 gcaggactcg atcctggagc ttctttgtca gattctacaa acagattctc taagggctat
     1561 ccagttctgg ctgctctacg ctccgccaaa agaaaaagat ttggctttgg ggcttctgca
     1621 gacggccttg gctcagctca tcccccagcc tctcccctcc atcccagcag agaagctgtg
     1681 gcaccaactt caagagcttc aagaccctcc tcaagagata caacaggcaa cctacagtcc
     1741 atccctgaag aagacgaaaa caccaccagt atccaagaca gacaaaccag agtacatggg
     1801 caaagcccaa gtcctcctag tacatccgat cgagaaccga gaggagaaaa tgaccaagcc
     1861 caaggcctaa agctgaggag catcgctgaa agcacggaga cttctgagta gatcaaaggc
     1921 agttagttag cttggggagg gagcactggc tcctgtcctg cttccttgac tccagcccct
     1981 ggccgccaag aatactctac taaataaaat actgccctcc ctccctgggt gagggcggat
     2041 ttaccctccc tca
//
