LOCUS       XM_008772959            1960 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus thymus, brain and testes associated
            (Tbata), transcript variant X6, mRNA.
ACCESSION   XM_008772959
VERSION     XM_008772959.3
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086038) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_008772959.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1960
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..1960
                     /gene="Tbata"
                     /note="thymus, brain and testes associated; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 ESTs, 28 long SRA reads, 1 Protein"
                     /db_xref="GeneID:499429"
                     /db_xref="RGD:1561665"
     CDS             256..1818
                     /gene="Tbata"
                     /codon_start=1
                     /product="protein TBATA isoform X6"
                     /protein_id="XP_008771181.1"
                     /db_xref="GeneID:499429"
                     /db_xref="RGD:1561665"
                     /translation="MTTEVKQLDEHPLVSPKTEPQPEKKPEQVPRSHGDVGFQKEPVV
                     PGIVDFELIHEDLKTTKPPTLQPTPGAYRFGRLSHHSFFSRHHPQAQRVTHIQDIAGK
                     PICMVRDEFSLAALTQPSFLTPCVMGMPTVSVPIGDPQSNRKPRLSTSATWRKNLKDL
                     ASRVTFFTKEIASTTNEQKDEPPMKDPSPREQGAKYSAETGRLIPAYSHALTRRNRQA
                     QRGHTSGKGGGVQASILQDQELLGGLTAPGVKFSGPVGRGPRAGFLGLHLLPPVPPPP
                     LHSYRQHRQPGLGSPPSTSKKQTEHILPLLDPRPQKKPPAKKAARDGDSQLLHWMEPL
                     TKHLAETTQSGQQAANSESPTSWQTFPDSWSSRVGRPLGYPKSPPKTSQHAGLDPGAS
                     LSDSTNRFSKGYPVLAALRSAKRKRFGFGASADGLGSAHPPASPLHPSREAVAPTSRA
                     SRPSSRDTTGNLQSIPEEDENTTSIQDRQTRVHGQSPSPPSTSDREPRGENDQAQGLK
                     LRSIAESTETSE"
     polyA_site      1960
                     /gene="Tbata"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 gggtaaccta gcaaccactg ggctcagcac agtcacaaag caacaggttt gcccacaatt
       61 ccgacaagcc ttcgattagt cttatccatc ctggtcaggc accaggggct tctagctcat
      121 atgctatagt gggacatctt cctgatcttg tgttccagtt tgcacacccg ccaccagacc
      181 acgagagctg tgccagccat agaagacgcc ggcattccca gtctaatctt ttcatctctc
      241 attgcaaacc ctgctatgac tacagaggtg aaacagctgg atgagcatcc tctagtgagt
      301 ccaaagacag agccccagcc tgagaagaag ccggagcaag ttccaaggag ccacggggat
      361 gttgggttcc agaaagagcc tgtggtccca ggcattgtgg atttcgagct gatccacgag
      421 gacctgaaga ccacaaagcc cccaacactg caaccaacac ccggtgccta ccgctttgga
      481 cgcctcagcc atcattcctt cttctcgagg catcacccgc aagcacagcg agtgactcat
      541 atccaagata tcgctggcaa gcccatctgc atggtcaggg acgagttctc tctggcggcc
      601 ttgactcagc cctcattctt aaccccctgt gtgatgggga tgcctaccgt ctctgttccc
      661 attggggatc cacagtccaa tcggaagccc cggctttcta cttccgccac ctggaggaag
      721 aatttaaagg acctggcctc ccgagtgact ttcttcacta aggaaatcgc gtcaacaacc
      781 aatgagcaga aggacgagcc tcctatgaag gatccttctc cgagagagca gggggccaag
      841 tactcagctg agactggtag gcttatccct gcttacagcc atgccctcac ccgccgaaat
      901 cgccaggccc agcggggcca cacttctggc aaaggtggag gagtccaagc ctccattctg
      961 caggaccagg aactgctggg cggcctcacc gcacctggag ttaagttctc aggtcccgtg
     1021 gggagggggc ccagggcagg attcctaggg ctccacctcc tacctccggt accccctcca
     1081 cccctccata gctacagaca acaccggcaa cctggcctag gaagtccccc gagcacatcc
     1141 aagaaacaga cggaacatat cctgccacta cttgacccga ggccacagaa aaagccaccg
     1201 gcaaagaaag cagctaggga tggagattcc cagctgctcc actggatgga acccctcact
     1261 aagcatttgg cagaaaccac ccaatctggc cagcaggctg ccaacagcga gtcccctacc
     1321 tcctggcaaa catttccaga ttcttggagc tccagggtgg ggaggccctt ggggtacccc
     1381 aagtcaccac ccaaaacatc ccagcatgca ggactcgatc ctggagcttc tttgtcagat
     1441 tctacaaaca gattctctaa gggctatcca gttctggctg ctctacgctc cgccaaaaga
     1501 aaaagatttg gctttggggc ttctgcagac ggccttggct cagctcatcc cccagcctct
     1561 cccctccatc ccagcagaga agctgtggca ccaacttcaa gagcttcaag accctcctca
     1621 agagatacaa caggcaacct acagtccatc cctgaagaag acgaaaacac caccagtatc
     1681 caagacagac aaaccagagt acatgggcaa agcccaagtc ctcctagtac atccgatcga
     1741 gaaccgagag gagaaaatga ccaagcccaa ggcctaaagc tgaggagcat cgctgaaagc
     1801 acggagactt ctgagtagat caaaggcagt tagttagctt ggggagggag cactggctcc
     1861 tgtcctgctt ccttgactcc agcccctggc cgccaagaat actctactaa ataaaatact
     1921 gccctccctc cctgggtgag ggcggattta ccctccctca
//
