LOCUS       NM_001400945            2005 bp    mRNA    linear   ROD 22-SEP-2024
DEFINITION  Rattus norvegicus TatD DNase domain containing 1 (Tatdn1),
            transcript variant 1, mRNA.
ACCESSION   NM_001400945 XM_008765527
VERSION     NM_001400945.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2005)
  AUTHORS   Morgenstern,M., Peikert,C.D., Lubbert,P., Suppanz,I., Klemm,C.,
            Alka,O., Steiert,C., Naumenko,N., Schendzielorz,A., Melchionda,L.,
            Muhlhauser,W.W.D., Knapp,B., Busch,J.D., Stiller,S.B.,
            Dannenmaier,S., Lindau,C., Licheva,M., Eickhorst,C., Galbusera,R.,
            Zerbes,R.M., Ryan,M.T., Kraft,C., Kozjak-Pavlovic,V., Drepper,F.,
            Dennerlein,S., Oeljeklaus,S., Pfanner,N., Wiedemann,N. and
            Warscheid,B.
  TITLE     Quantitative high-confidence human mitochondrial proteome and its
            dynamics in cellular context
  JOURNAL   Cell Metab 33 (12), 2464-2483 (2021)
   PUBMED   34800366
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000007.1.
            
            On Jan 31, 2022 this sequence version replaced XM_008765527.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360194.1172174.1,
                                           SRR26643429.27567.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-54                JAXUCZ010000007.1  92370347-92370400   c
            55-120              JAXUCZ010000007.1  92362767-92362832   c
            121-170             JAXUCZ010000007.1  92360570-92360619   c
            171-234             JAXUCZ010000007.1  92358011-92358074   c
            235-378             JAXUCZ010000007.1  92355909-92356052   c
            379-421             JAXUCZ010000007.1  92355774-92355816   c
            422-507             JAXUCZ010000007.1  92351273-92351358   c
            508-548             JAXUCZ010000007.1  92351148-92351188   c
            549-625             JAXUCZ010000007.1  92348986-92349062   c
            626-696             JAXUCZ010000007.1  92344976-92345046   c
            697-823             JAXUCZ010000007.1  92344030-92344156   c
            824-2005            JAXUCZ010000007.1  92339454-92340635   c
FEATURES             Location/Qualifiers
     source          1..2005
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q33"
     gene            1..2005
                     /gene="Tatdn1"
                     /note="TatD DNase domain containing 1"
                     /db_xref="GeneID:690068"
                     /db_xref="RGD:1585145"
     exon            1..54
                     /gene="Tatdn1"
                     /inference="alignment:Splign:2.1.0"
     CDS             33..920
                     /gene="Tatdn1"
                     /note="isoform 1 is encoded by transcript variant 1;
                     putative deoxyribonuclease TATDN1"
                     /codon_start=1
                     /product="deoxyribonuclease TATDN1 isoform 1"
                     /protein_id="NP_001387874.1"
                     /db_xref="GeneID:690068"
                     /db_xref="RGD:1585145"
                     /translation="MSLFKFVDIGINLTDPMFRGIYRGVQKHQDDLQDVIGRAVQIGV
                     KKFMITGGSLQDSKDALRLAQTNDMFFSTVGCHPTRCDEFEKDSPDQYLAGLLHLAEN
                     NKGKVVAIGECGLDFDRLQFCPKDTQLKYFEKQFELSEQTKLPMFLHCRNSHTEFLDI
                     MRRNRDRCVGGVVHSFDGTKEAAAALIDLDLYIGFNGCSLKTEANLEVLKSIPSEKLM
                     IETDAPWCGVKSTHAGSKYIKTAFPTKKKWEAGCCLKDRNEPCHIVQILEIMSAVREE
                     DPLELANTLYNNTIKIFFS"
     exon            55..120
                     /gene="Tatdn1"
                     /inference="alignment:Splign:2.1.0"
     exon            121..170
                     /gene="Tatdn1"
                     /inference="alignment:Splign:2.1.0"
     exon            171..234
                     /gene="Tatdn1"
                     /inference="alignment:Splign:2.1.0"
     exon            235..378
                     /gene="Tatdn1"
                     /inference="alignment:Splign:2.1.0"
     exon            379..421
                     /gene="Tatdn1"
                     /inference="alignment:Splign:2.1.0"
     exon            422..507
                     /gene="Tatdn1"
                     /inference="alignment:Splign:2.1.0"
     exon            508..548
                     /gene="Tatdn1"
                     /inference="alignment:Splign:2.1.0"
     exon            549..625
                     /gene="Tatdn1"
                     /inference="alignment:Splign:2.1.0"
     exon            626..696
                     /gene="Tatdn1"
                     /inference="alignment:Splign:2.1.0"
     exon            697..823
                     /gene="Tatdn1"
                     /inference="alignment:Splign:2.1.0"
     exon            824..2005
                     /gene="Tatdn1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gccttttcct gggaggagtc tgctgcgcta tcatgagtct cttcaagttc gtggatattg
       61 gaatcaacct gacagatcct atgttcagag gaatttatag gggcgtgcag aagcatcaag
      121 atgacttaca agatgtaata gggagagctg tccagattgg tgttaaaaag tttatgatca
      181 caggtggaag tctacaagac agtaaagatg cactgcggtt ggcacaaaca aatgacatgt
      241 ttttcagtac agtggggtgt catcccacga gatgtgatga gtttgagaag gacagccctg
      301 accagtactt agcaggattg ctgcaccttg ctgaaaacaa caaaggaaaa gttgtagcaa
      361 taggggagtg tggacttgat tttgaccgac ttcagttttg tcccaaagat actcaactca
      421 aatattttga aaaacaattt gaattgtcag aacaaacaaa attaccaatg tttcttcatt
      481 gtcgaaattc acatactgag tttttggata ttatgagaag aaatagagat cggtgtgtgg
      541 gtggagtggt gcattcattt gatggtacga aggaagcagc ggctgctttg attgacttgg
      601 acctttatat aggatttaat ggttgctctc tgaaaactga agctaatttg gaagttctga
      661 agtcaatacc cagtgaaaaa ctaatgattg agacagatgc accttggtgt ggagttaaaa
      721 gtacacatgc tggatcaaaa tatataaaaa ctgcatttcc taccaaaaag aagtgggaag
      781 ccgggtgctg tttaaaagac aggaacgagc cctgccacat agttcaaata ttggagataa
      841 tgtcagcagt aagagaagaa gatccactgg aattagccaa cacgctatat aacaacacca
      901 ttaaaatatt cttttcctga tttgtgtttt ctttttatga tgtggaattt catggtaaga
      961 ctgtgagctt tattaaggaa atcttcccag tggttcttta aagaggtagc actatacact
     1021 gtgccttgat tttactcaca aagtcagatc agcactgttt aggctgctta atgctttagg
     1081 taacagtgac agccttttta ttgtgtaatc tcatcagaag tctgaaagga cagttttaca
     1141 ctctcactgc aaacacagtg atgcttctac ctaaaactta gacagcatgt cctggtttat
     1201 gtcaaagttt agttgataac aagcctattt ctcaattctg tccttgattt gtgtgacttt
     1261 tgaacctgcc tctaagctgc actcagattt caagtttctc agttgcttct agcagggtat
     1321 cttgccttag ttttagaaaa cattttattt agaaagcctt tctactcaag attattttat
     1381 ctcctgtctc ttatactaac attcctttat tcggcatttt cattttccct tcgttttaaa
     1441 gaaaaactag agtgcagcat tagacagatt ctgatttcat tgagggctct ttggcacact
     1501 tgacgcaccg tgtgatcatt atctctatta agaagttatt tgttcaaatt ttgtcataaa
     1561 aacgtgaaaa cattttattc tatgtacaat aatgtacaca aatttaaata ggtcaccaaa
     1621 gagaccagaa gtaattaaag aggtatattt acagtagcac atcacagtaa acggaaaatc
     1681 attcacagtt tcaacatcga tactgttttt gtgcttggtt acacactgac gtgaagcata
     1741 ttactccatt ttggatgaac tgaattttaa acaaatacct caatgattag taaatgctac
     1801 tttaatcagt gtcatcatta aattctgctg ctgctgctgc tgcgcctgtg tgctgaatcc
     1861 ccccgtttct ttctctttga atatcatcat cacagtctgt actgtcatcc tcgttcattt
     1921 ctcggtcaga tccagcagca tcttctctta aagcttcctc tgggttttga ttttcattgg
     1981 gtgcaataaa tccgttgttg ttaga
//
